Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2387.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2386.1 and Xcc-8004.2387.1 overlap by 1 nucleotidesXcc-8004.2387.1 and Xcc-8004.2388.1 are separated by 210 nucleotides Xcc-8004.2386.1: Xcc-8004.2386.1 - UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-), at 2,327,738 to 2,329,624 Xcc-8004.2386.1 Xcc-8004.2387.1: Xcc-8004.2387.1 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 2,329,624 to 2,330,517 Xcc-8004.2387.1 Xcc-8004.2388.1: Xcc-8004.2388.1 - putative Glutathione-regulated potassium-efflux system protein KefB, at 2,330,728 to 2,332,542 Xcc-8004.2388.1 Position (kb) 2329 2330 2331Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2328.780 kb on + strand, within Xcc-8004.2386.1at 2328.780 kb on + strand, within Xcc-8004.2386.1at 2328.780 kb on + strand, within Xcc-8004.2386.1at 2328.781 kb on - strand, within Xcc-8004.2386.1at 2328.781 kb on - strand, within Xcc-8004.2386.1at 2328.821 kb on + strand, within Xcc-8004.2386.1at 2328.821 kb on + strand, within Xcc-8004.2386.1at 2328.822 kb on - strand, within Xcc-8004.2386.1at 2328.822 kb on - strand, within Xcc-8004.2386.1at 2328.832 kb on - strand, within Xcc-8004.2386.1at 2328.832 kb on - strand, within Xcc-8004.2386.1at 2328.832 kb on - strand, within Xcc-8004.2386.1at 2328.993 kb on - strand, within Xcc-8004.2386.1at 2329.160 kb on + strand, within Xcc-8004.2386.1at 2329.161 kb on - strand, within Xcc-8004.2386.1at 2329.161 kb on - strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.232 kb on + strand, within Xcc-8004.2386.1at 2329.233 kb on - strand, within Xcc-8004.2386.1at 2329.233 kb on - strand, within Xcc-8004.2386.1at 2329.233 kb on - strand, within Xcc-8004.2386.1at 2329.233 kb on - strand, within Xcc-8004.2386.1at 2329.233 kb on - strand, within Xcc-8004.2386.1at 2329.233 kb on - strand, within Xcc-8004.2386.1at 2329.233 kb on - strand, within Xcc-8004.2386.1at 2329.233 kb on - strand, within Xcc-8004.2386.1at 2329.233 kb on - strand, within Xcc-8004.2386.1at 2329.233 kb on - strand, within Xcc-8004.2386.1at 2329.233 kb on - strand, within Xcc-8004.2386.1at 2329.233 kb on - strand, within Xcc-8004.2386.1at 2329.233 kb on - strand, within Xcc-8004.2386.1at 2329.234 kb on + strand, within Xcc-8004.2386.1at 2329.234 kb on + strand, within Xcc-8004.2386.1at 2329.235 kb on - strand, within Xcc-8004.2386.1at 2329.235 kb on - strand, within Xcc-8004.2386.1at 2329.235 kb on - strand, within Xcc-8004.2386.1at 2329.235 kb on - strand, within Xcc-8004.2386.1at 2329.331 kb on + strand, within Xcc-8004.2386.1at 2329.331 kb on + strand, within Xcc-8004.2386.1at 2329.376 kb on + strand, within Xcc-8004.2386.1at 2329.376 kb on + strand, within Xcc-8004.2386.1at 2329.376 kb on + strand, within Xcc-8004.2386.1at 2329.377 kb on - strand, within Xcc-8004.2386.1at 2329.377 kb on - strand, within Xcc-8004.2386.1at 2329.377 kb on - strand, within Xcc-8004.2386.1at 2329.496 kb on + strandat 2329.583 kb on - strandat 2329.623 kb on - strandat 2329.636 kb on - strandat 2329.636 kb on - strandat 2329.650 kb on - strandat 2329.744 kb on + strand, within Xcc-8004.2387.1at 2329.826 kb on - strand, within Xcc-8004.2387.1at 2329.841 kb on - strand, within Xcc-8004.2387.1at 2329.841 kb on - strand, within Xcc-8004.2387.1at 2330.140 kb on + strand, within Xcc-8004.2387.1at 2330.252 kb on - strand, within Xcc-8004.2387.1at 2330.640 kb on + strandat 2330.640 kb on + strandat 2330.640 kb on + strandat 2330.640 kb on + strandat 2330.640 kb on + strandat 2330.640 kb on + strandat 2330.641 kb on - strandat 2330.641 kb on - strandat 2330.641 kb on - strandat 2330.641 kb on - strandat 2330.641 kb on - strandat 2330.641 kb on - strandat 2330.679 kb on + strandat 2330.803 kb on + strandat 2330.970 kb on - strand, within Xcc-8004.2388.1at 2330.970 kb on - strand, within Xcc-8004.2388.1at 2330.970 kb on - strand, within Xcc-8004.2388.1at 2330.970 kb on - strand, within Xcc-8004.2388.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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2,328,780 + Xcc-8004.2386.1 0.55 -0.5
2,328,780 + Xcc-8004.2386.1 0.55 +0.3
2,328,780 + Xcc-8004.2386.1 0.55 -0.3
2,328,781 - Xcc-8004.2386.1 0.55 +0.3
2,328,781 - Xcc-8004.2386.1 0.55 +0.8
2,328,821 + Xcc-8004.2386.1 0.57 +0.6
2,328,821 + Xcc-8004.2386.1 0.57 +0.7
2,328,822 - Xcc-8004.2386.1 0.57 -0.4
2,328,822 - Xcc-8004.2386.1 0.57 -0.0
2,328,832 - Xcc-8004.2386.1 0.58 +0.4
2,328,832 - Xcc-8004.2386.1 0.58 +1.0
2,328,832 - Xcc-8004.2386.1 0.58 -0.9
2,328,993 - Xcc-8004.2386.1 0.67 -0.5
2,329,160 + Xcc-8004.2386.1 0.75 +1.1
2,329,161 - Xcc-8004.2386.1 0.75 +0.6
2,329,161 - Xcc-8004.2386.1 0.75 -0.9
2,329,232 + Xcc-8004.2386.1 0.79 -1.0
2,329,232 + Xcc-8004.2386.1 0.79 +1.9
2,329,232 + Xcc-8004.2386.1 0.79 +1.2
2,329,232 + Xcc-8004.2386.1 0.79 +0.2
2,329,232 + Xcc-8004.2386.1 0.79 +1.2
2,329,232 + Xcc-8004.2386.1 0.79 +1.3
2,329,232 + Xcc-8004.2386.1 0.79 +0.2
2,329,232 + Xcc-8004.2386.1 0.79 +0.0
2,329,232 + Xcc-8004.2386.1 0.79 +1.7
2,329,232 + Xcc-8004.2386.1 0.79 +0.0
2,329,232 + Xcc-8004.2386.1 0.79 -0.5
2,329,232 + Xcc-8004.2386.1 0.79 -0.0
2,329,232 + Xcc-8004.2386.1 0.79 +0.3
2,329,232 + Xcc-8004.2386.1 0.79 +0.6
2,329,232 + Xcc-8004.2386.1 0.79 -1.0
2,329,232 + Xcc-8004.2386.1 0.79 +0.2
2,329,232 + Xcc-8004.2386.1 0.79 -0.2
2,329,232 + Xcc-8004.2386.1 0.79 +0.9
2,329,232 + Xcc-8004.2386.1 0.79 +0.6
2,329,232 + Xcc-8004.2386.1 0.79 +0.3
2,329,232 + Xcc-8004.2386.1 0.79 +0.1
2,329,233 - Xcc-8004.2386.1 0.79 +0.0
2,329,233 - Xcc-8004.2386.1 0.79 +0.4
2,329,233 - Xcc-8004.2386.1 0.79 +1.0
2,329,233 - Xcc-8004.2386.1 0.79 +0.5
2,329,233 - Xcc-8004.2386.1 0.79 -0.7
2,329,233 - Xcc-8004.2386.1 0.79 +0.6
2,329,233 - Xcc-8004.2386.1 0.79 -1.0
2,329,233 - Xcc-8004.2386.1 0.79 -3.1
2,329,233 - Xcc-8004.2386.1 0.79 +1.0
2,329,233 - Xcc-8004.2386.1 0.79 +0.1
2,329,233 - Xcc-8004.2386.1 0.79 +0.9
2,329,233 - Xcc-8004.2386.1 0.79 +1.7
2,329,233 - Xcc-8004.2386.1 0.79 +0.8
2,329,234 + Xcc-8004.2386.1 0.79 -0.5
2,329,234 + Xcc-8004.2386.1 0.79 -1.1
2,329,235 - Xcc-8004.2386.1 0.79 +0.1
2,329,235 - Xcc-8004.2386.1 0.79 -0.6
2,329,235 - Xcc-8004.2386.1 0.79 -0.3
2,329,235 - Xcc-8004.2386.1 0.79 -1.1
2,329,331 + Xcc-8004.2386.1 0.84 +0.8
2,329,331 + Xcc-8004.2386.1 0.84 +0.3
2,329,376 + Xcc-8004.2386.1 0.87 -0.6
2,329,376 + Xcc-8004.2386.1 0.87 +0.5
2,329,376 + Xcc-8004.2386.1 0.87 -0.9
2,329,377 - Xcc-8004.2386.1 0.87 +0.9
2,329,377 - Xcc-8004.2386.1 0.87 +0.1
2,329,377 - Xcc-8004.2386.1 0.87 +1.4
2,329,496 + +0.3
2,329,583 - +2.0
2,329,623 - +1.4
2,329,636 - +1.7
2,329,636 - +0.9
2,329,650 - -0.2
2,329,744 + Xcc-8004.2387.1 0.13 +0.1
2,329,826 - Xcc-8004.2387.1 0.23 +1.1
2,329,841 - Xcc-8004.2387.1 0.24 +1.3
2,329,841 - Xcc-8004.2387.1 0.24 +1.0
2,330,140 + Xcc-8004.2387.1 0.58 +0.3
2,330,252 - Xcc-8004.2387.1 0.70 +1.0
2,330,640 + -0.9
2,330,640 + +0.7
2,330,640 + -1.3
2,330,640 + -0.9
2,330,640 + -0.6
2,330,640 + +0.1
2,330,641 - +0.1
2,330,641 - -0.3
2,330,641 - +0.6
2,330,641 - -0.3
2,330,641 - +1.1
2,330,641 - -0.5
2,330,679 + +0.7
2,330,803 + +0.4
2,330,970 - Xcc-8004.2388.1 0.13 -0.3
2,330,970 - Xcc-8004.2388.1 0.13 -0.3
2,330,970 - Xcc-8004.2388.1 0.13 +0.3
2,330,970 - Xcc-8004.2388.1 0.13 +0.6

Or see this region's nucleotide sequence