Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.234.1 and Xcc-8004.235.1 are separated by 270 nucleotides Xcc-8004.235.1 and Xcc-8004.236.1 are separated by 116 nucleotides Xcc-8004.236.1 and Xcc-8004.237.1 are separated by 54 nucleotides
Xcc-8004.234.1: Xcc-8004.234.1 - cardiolipin synthase, at 230,670 to 232,652
Xcc-8004.234.1
Xcc-8004.235.1: Xcc-8004.235.1 - ComA operon protein 2, at 232,923 to 233,351
Xcc-8004.235.1
Xcc-8004.236.1: Xcc-8004.236.1 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 233,468 to 234,271
Xcc-8004.236.1
Xcc-8004.237.1: Xcc-8004.237.1 - FIG01211085: hypothetical protein, at 234,326 to 235,312
Xcc-8004.237.1
Position (kb) 232
233
234 Strain fitness (log2 ratio) -2
-1
0
1
2 at 231.933 kb on + strand, within Xcc-8004.234.1 at 231.934 kb on - strand, within Xcc-8004.234.1 at 232.044 kb on - strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.273 kb on - strand, within Xcc-8004.234.1 at 232.273 kb on - strand, within Xcc-8004.234.1 at 232.273 kb on - strand, within Xcc-8004.234.1 at 232.273 kb on - strand, within Xcc-8004.234.1 at 232.413 kb on + strand, within Xcc-8004.234.1 at 232.413 kb on + strand, within Xcc-8004.234.1 at 232.413 kb on + strand, within Xcc-8004.234.1 at 232.414 kb on - strand, within Xcc-8004.234.1 at 232.482 kb on + strand at 232.483 kb on - strand at 232.483 kb on - strand at 232.483 kb on - strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.676 kb on + strand at 232.676 kb on + strand at 232.676 kb on + strand at 232.677 kb on - strand at 232.677 kb on - strand at 232.677 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 233.052 kb on - strand, within Xcc-8004.235.1 at 233.071 kb on - strand, within Xcc-8004.235.1 at 233.071 kb on - strand, within Xcc-8004.235.1 at 233.147 kb on + strand, within Xcc-8004.235.1 at 233.148 kb on - strand, within Xcc-8004.235.1 at 233.148 kb on - strand, within Xcc-8004.235.1 at 233.148 kb on - strand, within Xcc-8004.235.1 at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.429 kb on - strand at 233.429 kb on - strand at 233.429 kb on - strand at 233.528 kb on + strand at 233.529 kb on - strand at 233.529 kb on - strand at 234.133 kb on + strand, within Xcc-8004.236.1 at 234.133 kb on + strand, within Xcc-8004.236.1 at 234.134 kb on - strand, within Xcc-8004.236.1 at 234.134 kb on - strand, within Xcc-8004.236.1 at 234.342 kb on - strand at 234.342 kb on - strand at 234.342 kb on - strand at 234.342 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 231,933 + Xcc-8004.234.1 0.64 -0.9 231,934 - Xcc-8004.234.1 0.64 -1.9 232,044 - Xcc-8004.234.1 0.69 +0.3 232,272 + Xcc-8004.234.1 0.81 -0.2 232,272 + Xcc-8004.234.1 0.81 -1.6 232,272 + Xcc-8004.234.1 0.81 +0.3 232,272 + Xcc-8004.234.1 0.81 -1.3 232,272 + Xcc-8004.234.1 0.81 +0.8 232,272 + Xcc-8004.234.1 0.81 +1.7 232,273 - Xcc-8004.234.1 0.81 -0.4 232,273 - Xcc-8004.234.1 0.81 -1.9 232,273 - Xcc-8004.234.1 0.81 +0.4 232,273 - Xcc-8004.234.1 0.81 -0.3 232,413 + Xcc-8004.234.1 0.88 -0.2 232,413 + Xcc-8004.234.1 0.88 +1.0 232,413 + Xcc-8004.234.1 0.88 -1.0 232,414 - Xcc-8004.234.1 0.88 -0.7 232,482 + +0.0 232,483 - +0.5 232,483 - -0.0 232,483 - +1.7 232,551 + -0.1 232,551 + +0.8 232,551 + +1.2 232,551 + -0.3 232,551 + +0.2 232,551 + -1.1 232,551 + +0.9 232,551 + +0.3 232,552 - +0.7 232,552 - -1.2 232,552 - +0.3 232,552 - +0.8 232,552 - +0.5 232,552 - -0.6 232,552 - +0.0 232,552 - +0.1 232,552 - +0.6 232,676 + -2.3 232,676 + -0.0 232,676 + -0.5 232,677 - +0.3 232,677 - +0.1 232,677 - -0.5 232,833 - +0.1 232,833 - +0.6 232,833 - +0.1 232,833 - +0.5 232,833 - -0.6 232,833 - -0.8 232,833 - +1.0 233,052 - Xcc-8004.235.1 0.30 +1.8 233,071 - Xcc-8004.235.1 0.34 -0.9 233,071 - Xcc-8004.235.1 0.34 -0.2 233,147 + Xcc-8004.235.1 0.52 +0.5 233,148 - Xcc-8004.235.1 0.52 +1.7 233,148 - Xcc-8004.235.1 0.52 +0.3 233,148 - Xcc-8004.235.1 0.52 -1.1 233,428 + +0.1 233,428 + -0.4 233,428 + +0.2 233,428 + +1.7 233,428 + +0.0 233,428 + -0.7 233,428 + +0.4 233,429 - +0.6 233,429 - -0.8 233,429 - -0.8 233,528 + +0.6 233,529 - -0.3 233,529 - +0.8 234,133 + Xcc-8004.236.1 0.83 +1.9 234,133 + Xcc-8004.236.1 0.83 -0.3 234,134 - Xcc-8004.236.1 0.83 +0.5 234,134 - Xcc-8004.236.1 0.83 -1.3 234,342 - -0.2 234,342 - +0.2 234,342 - -0.5 234,342 - +0.5
Or see this region's nucleotide sequence