Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2337.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,285,231	+		Xcc-8004.2336.1	0.20	-0.7
2,285,231	+		Xcc-8004.2336.1	0.20	-1.5
2,285,232	-		Xcc-8004.2336.1	0.20	-1.1
2,285,232	-		Xcc-8004.2336.1	0.20	+0.4
2,285,232	-		Xcc-8004.2336.1	0.20	+0.7
2,285,232	-		Xcc-8004.2336.1	0.20	-0.7
2,285,232	-		Xcc-8004.2336.1	0.20	+0.4
2,285,353	+		Xcc-8004.2336.1	0.40	-0.1
2,285,353	+		Xcc-8004.2336.1	0.40	-0.6
2,285,354	-		Xcc-8004.2336.1	0.40	+1.3
2,285,354	-		Xcc-8004.2336.1	0.40	+0.4
2,285,386	+		Xcc-8004.2336.1	0.45	-0.2
2,285,386	+		Xcc-8004.2336.1	0.45	+0.6
2,285,386	+		Xcc-8004.2336.1	0.45	+0.7
2,285,386	+		Xcc-8004.2336.1	0.45	+1.0
2,285,386	+		Xcc-8004.2336.1	0.45	-0.7
2,285,386	+		Xcc-8004.2336.1	0.45	+0.3
2,285,387	-		Xcc-8004.2336.1	0.45	-0.9
2,285,387	-		Xcc-8004.2336.1	0.45	-0.2
2,285,387	-		Xcc-8004.2336.1	0.45	+0.1
2,285,387	-		Xcc-8004.2336.1	0.45	-1.4
2,285,387	-		Xcc-8004.2336.1	0.45	-1.0
2,285,387	-		Xcc-8004.2336.1	0.45	+1.0
2,285,387	-		Xcc-8004.2336.1	0.45	-0.2
2,285,387	-		Xcc-8004.2336.1	0.45	+0.5
2,285,387	-		Xcc-8004.2336.1	0.45	+1.1
2,285,387	-		Xcc-8004.2336.1	0.45	-0.2
2,285,575	+		Xcc-8004.2336.1	0.76	+0.1
2,285,575	+		Xcc-8004.2336.1	0.76	-0.7
2,285,575	+		Xcc-8004.2336.1	0.76	-0.7
2,285,575	+		Xcc-8004.2336.1	0.76	+0.5
2,285,576	-		Xcc-8004.2336.1	0.76	-0.2
2,285,576	-		Xcc-8004.2336.1	0.76	-0.2
2,285,717	-				-0.9
2,286,016	+		Xcc-8004.2337.1	0.25	-2.7
2,286,051	+		Xcc-8004.2337.1	0.28	-1.1
2,286,052	-		Xcc-8004.2337.1	0.28	-1.4
2,286,052	-		Xcc-8004.2337.1	0.28	-0.1
2,286,055	+		Xcc-8004.2337.1	0.28	-1.1
2,286,055	+		Xcc-8004.2337.1	0.28	-1.1
2,286,055	+		Xcc-8004.2337.1	0.28	-1.6
2,286,055	+		Xcc-8004.2337.1	0.28	+0.8
2,286,055	+		Xcc-8004.2337.1	0.28	-2.1
2,286,056	-		Xcc-8004.2337.1	0.28	-0.9
2,286,056	-		Xcc-8004.2337.1	0.28	-1.7
2,286,061	+		Xcc-8004.2337.1	0.29	-0.9
2,286,061	+		Xcc-8004.2337.1	0.29	-0.9
2,286,061	+		Xcc-8004.2337.1	0.29	-2.4
2,286,061	+		Xcc-8004.2337.1	0.29	-1.3
2,286,061	+		Xcc-8004.2337.1	0.29	-0.9
2,286,061	+		Xcc-8004.2337.1	0.29	-0.9
2,286,061	+		Xcc-8004.2337.1	0.29	-1.6
2,286,062	-		Xcc-8004.2337.1	0.29	-1.0
2,286,113	-		Xcc-8004.2337.1	0.34	-1.1
2,286,113	-		Xcc-8004.2337.1	0.34	+1.7
2,286,214	+		Xcc-8004.2337.1	0.43	-2.9
2,286,278	-		Xcc-8004.2337.1	0.49	-2.2
2,286,278	-		Xcc-8004.2337.1	0.49	-3.1
2,286,790	+				-0.3
2,286,813	+				-0.3
2,286,813	+				-1.7
2,286,814	-				-0.4
2,286,814	-				-0.3
2,286,926	+				-0.1
2,286,926	+				-1.4
2,286,927	-				+0.3
2,286,927	-				+2.7
2,286,927	-				-1.6
2,286,927	-				+0.8
2,286,927	-				+0.2
2,287,027	-				+0.3
2,287,046	-				-0.5
2,287,046	-				+0.1
2,287,046	-				-0.5
2,287,094	+				-0.1
2,287,094	+				-1.1
2,287,094	+				+0.1
2,287,094	+				-0.2
2,287,094	+				+0.2
2,287,102	+				-0.7
2,287,102	+				+0.4
2,287,102	+				-0.9
2,287,102	+				-0.4
2,287,102	+				+0.7
2,287,102	+				+0.5
2,287,103	-				-0.3
2,287,159	+				+0.3
2,287,159	+				-0.1
2,287,160	-				-0.9
2,287,160	-				-0.2
2,287,160	-				+0.3
2,287,169	+				+0.6
2,287,169	+				-1.4
2,287,169	+				+1.4
2,287,169	+				+0.1
2,287,169	+				+0.5
2,287,169	+				+0.4
2,287,169	+				+1.1
2,287,170	-				+1.0
2,287,204	+				+0.8
2,287,204	+				+1.1
2,287,204	+				+0.4
2,287,204	+				+1.1
2,287,204	+				-1.0
2,287,204	+				+0.6
2,287,204	+				+1.2
2,287,204	+				-1.0
2,287,205	-				-0.8
2,287,205	-				-0.4
2,287,205	-				+0.0
2,287,205	-				+0.1
2,287,205	-				+0.1
2,287,205	-				-0.2
2,287,205	-				-0.1
2,287,205	-				-0.1
2,287,205	-				-0.2
2,287,205	-				+0.4
2,287,205	-				+0.5
2,287,212	+				-2.2
2,287,212	+				+0.3
2,287,212	+				+0.0
2,287,212	+				+1.0
2,287,213	-				+1.3
2,287,213	-				-0.5
2,287,213	-				-0.5
2,287,213	-				-0.8
2,287,213	-				+1.0
2,287,213	-				-1.3
2,287,213	-				-0.4
2,287,704	+		Xcc-8004.2339.1	0.47	-0.8