Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2323.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2322.1 and Xcc-8004.2323.1 are separated by 75 nucleotidesXcc-8004.2323.1 and Xcc-8004.2324.1 overlap by 4 nucleotidesXcc-8004.2324.1 and Xcc-8004.2325.1 overlap by 1 nucleotidesXcc-8004.2325.1 and Xcc-8004.2326.1 are separated by 58 nucleotides Xcc-8004.2322.1: Xcc-8004.2322.1 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 2,269,203 to 2,270,153 Xcc-8004.2322.1 Xcc-8004.2323.1: Xcc-8004.2323.1 - Argininosuccinate lyase (EC 4.3.2.1), at 2,270,229 to 2,271,524 Xcc-8004.2323.1 Xcc-8004.2324.1: Xcc-8004.2324.1 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 2,271,521 to 2,271,928 Xcc-8004.2324.1 Xcc-8004.2325.1: Xcc-8004.2325.1 - FIG01209702: hypothetical protein, at 2,271,928 to 2,272,188 Xcc-8004.2325.1 Xcc-8004.2326.1: Xcc-8004.2326.1 - Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA, at 2,272,247 to 2,273,401 Xcc-8004.2326.1 Position (kb) 2270 2271 2272Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2269.359 kb on + strand, within Xcc-8004.2322.1at 2269.360 kb on - strand, within Xcc-8004.2322.1at 2269.360 kb on - strand, within Xcc-8004.2322.1at 2269.542 kb on + strand, within Xcc-8004.2322.1at 2269.542 kb on + strand, within Xcc-8004.2322.1at 2269.542 kb on + strand, within Xcc-8004.2322.1at 2269.543 kb on - strand, within Xcc-8004.2322.1at 2269.543 kb on - strand, within Xcc-8004.2322.1at 2269.545 kb on + strand, within Xcc-8004.2322.1at 2269.545 kb on + strand, within Xcc-8004.2322.1at 2269.546 kb on - strand, within Xcc-8004.2322.1at 2269.546 kb on - strand, within Xcc-8004.2322.1at 2269.611 kb on + strand, within Xcc-8004.2322.1at 2269.611 kb on + strand, within Xcc-8004.2322.1at 2269.761 kb on + strand, within Xcc-8004.2322.1at 2269.932 kb on + strand, within Xcc-8004.2322.1at 2270.210 kb on + strandat 2270.331 kb on + strandat 2270.331 kb on + strandat 2270.331 kb on + strandat 2270.331 kb on + strandat 2270.331 kb on + strandat 2270.332 kb on - strandat 2270.332 kb on - strandat 2270.590 kb on + strand, within Xcc-8004.2323.1at 2270.590 kb on + strand, within Xcc-8004.2323.1at 2270.681 kb on - strand, within Xcc-8004.2323.1at 2270.695 kb on - strand, within Xcc-8004.2323.1at 2270.803 kb on + strand, within Xcc-8004.2323.1at 2270.804 kb on - strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.913 kb on + strand, within Xcc-8004.2323.1at 2270.914 kb on - strand, within Xcc-8004.2323.1at 2270.914 kb on - strand, within Xcc-8004.2323.1at 2270.914 kb on - strand, within Xcc-8004.2323.1at 2270.914 kb on - strand, within Xcc-8004.2323.1at 2271.054 kb on + strand, within Xcc-8004.2323.1at 2271.327 kb on + strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.328 kb on - strand, within Xcc-8004.2323.1at 2271.384 kb on + strand, within Xcc-8004.2323.1at 2271.384 kb on + strand, within Xcc-8004.2323.1at 2271.385 kb on - strand, within Xcc-8004.2323.1at 2271.385 kb on - strand, within Xcc-8004.2323.1at 2271.385 kb on - strand, within Xcc-8004.2323.1at 2271.557 kb on + strandat 2271.558 kb on - strandat 2271.558 kb on - strandat 2271.664 kb on + strand, within Xcc-8004.2324.1at 2271.665 kb on - strand, within Xcc-8004.2324.1at 2271.686 kb on + strand, within Xcc-8004.2324.1at 2271.686 kb on + strand, within Xcc-8004.2324.1at 2271.686 kb on + strand, within Xcc-8004.2324.1at 2271.686 kb on + strand, within Xcc-8004.2324.1at 2271.687 kb on - strand, within Xcc-8004.2324.1at 2271.854 kb on - strand, within Xcc-8004.2324.1at 2271.854 kb on - strand, within Xcc-8004.2324.1at 2271.940 kb on + strandat 2272.075 kb on + strand, within Xcc-8004.2325.1at 2272.075 kb on + strand, within Xcc-8004.2325.1at 2272.075 kb on + strand, within Xcc-8004.2325.1at 2272.075 kb on + strand, within Xcc-8004.2325.1at 2272.076 kb on - strand, within Xcc-8004.2325.1at 2272.076 kb on - strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.079 kb on + strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.080 kb on - strand, within Xcc-8004.2325.1at 2272.168 kb on + strandat 2272.168 kb on + strandat 2272.168 kb on + strandat 2272.168 kb on + strandat 2272.168 kb on + strandat 2272.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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2,269,359 + Xcc-8004.2322.1 0.16 -0.3
2,269,360 - Xcc-8004.2322.1 0.17 -1.6
2,269,360 - Xcc-8004.2322.1 0.17 -2.2
2,269,542 + Xcc-8004.2322.1 0.36 -3.0
2,269,542 + Xcc-8004.2322.1 0.36 -3.2
2,269,542 + Xcc-8004.2322.1 0.36 -2.4
2,269,543 - Xcc-8004.2322.1 0.36 -1.4
2,269,543 - Xcc-8004.2322.1 0.36 -4.2
2,269,545 + Xcc-8004.2322.1 0.36 -1.5
2,269,545 + Xcc-8004.2322.1 0.36 -1.6
2,269,546 - Xcc-8004.2322.1 0.36 -2.2
2,269,546 - Xcc-8004.2322.1 0.36 -1.7
2,269,611 + Xcc-8004.2322.1 0.43 -2.6
2,269,611 + Xcc-8004.2322.1 0.43 -2.2
2,269,761 + Xcc-8004.2322.1 0.59 -1.0
2,269,932 + Xcc-8004.2322.1 0.77 -2.3
2,270,210 + -0.5
2,270,331 + -2.2
2,270,331 + -2.0
2,270,331 + -1.4
2,270,331 + -2.1
2,270,331 + -1.2
2,270,332 - -2.8
2,270,332 - -2.9
2,270,590 + Xcc-8004.2323.1 0.28 -0.3
2,270,590 + Xcc-8004.2323.1 0.28 -1.6
2,270,681 - Xcc-8004.2323.1 0.35 -3.6
2,270,695 - Xcc-8004.2323.1 0.36 -1.4
2,270,803 + Xcc-8004.2323.1 0.44 +0.7
2,270,804 - Xcc-8004.2323.1 0.44 -2.2
2,270,913 + Xcc-8004.2323.1 0.53 -2.8
2,270,913 + Xcc-8004.2323.1 0.53 -3.7
2,270,913 + Xcc-8004.2323.1 0.53 -2.8
2,270,913 + Xcc-8004.2323.1 0.53 -1.1
2,270,913 + Xcc-8004.2323.1 0.53 -0.8
2,270,913 + Xcc-8004.2323.1 0.53 -1.8
2,270,914 - Xcc-8004.2323.1 0.53 -1.9
2,270,914 - Xcc-8004.2323.1 0.53 -3.6
2,270,914 - Xcc-8004.2323.1 0.53 -1.5
2,270,914 - Xcc-8004.2323.1 0.53 -2.3
2,271,054 + Xcc-8004.2323.1 0.64 -0.6
2,271,327 + Xcc-8004.2323.1 0.85 -2.3
2,271,328 - Xcc-8004.2323.1 0.85 -3.1
2,271,328 - Xcc-8004.2323.1 0.85 -1.5
2,271,328 - Xcc-8004.2323.1 0.85 -1.3
2,271,328 - Xcc-8004.2323.1 0.85 -2.2
2,271,328 - Xcc-8004.2323.1 0.85 -0.6
2,271,384 + Xcc-8004.2323.1 0.89 -4.1
2,271,384 + Xcc-8004.2323.1 0.89 -1.5
2,271,385 - Xcc-8004.2323.1 0.89 -2.7
2,271,385 - Xcc-8004.2323.1 0.89 -0.3
2,271,385 - Xcc-8004.2323.1 0.89 -1.4
2,271,557 + +1.7
2,271,558 - -2.6
2,271,558 - -0.6
2,271,664 + Xcc-8004.2324.1 0.35 -0.3
2,271,665 - Xcc-8004.2324.1 0.35 -1.9
2,271,686 + Xcc-8004.2324.1 0.40 +0.1
2,271,686 + Xcc-8004.2324.1 0.40 +0.7
2,271,686 + Xcc-8004.2324.1 0.40 +0.9
2,271,686 + Xcc-8004.2324.1 0.40 +0.3
2,271,687 - Xcc-8004.2324.1 0.41 -1.4
2,271,854 - Xcc-8004.2324.1 0.82 -1.0
2,271,854 - Xcc-8004.2324.1 0.82 -1.7
2,271,940 + +1.3
2,272,075 + Xcc-8004.2325.1 0.56 -0.8
2,272,075 + Xcc-8004.2325.1 0.56 +0.1
2,272,075 + Xcc-8004.2325.1 0.56 +0.2
2,272,075 + Xcc-8004.2325.1 0.56 -1.4
2,272,076 - Xcc-8004.2325.1 0.57 -0.3
2,272,076 - Xcc-8004.2325.1 0.57 -0.0
2,272,079 + Xcc-8004.2325.1 0.58 -0.4
2,272,079 + Xcc-8004.2325.1 0.58 -0.0
2,272,079 + Xcc-8004.2325.1 0.58 +0.5
2,272,079 + Xcc-8004.2325.1 0.58 +0.0
2,272,079 + Xcc-8004.2325.1 0.58 +0.5
2,272,079 + Xcc-8004.2325.1 0.58 -0.1
2,272,079 + Xcc-8004.2325.1 0.58 +0.8
2,272,080 - Xcc-8004.2325.1 0.58 -1.4
2,272,080 - Xcc-8004.2325.1 0.58 +0.5
2,272,080 - Xcc-8004.2325.1 0.58 -0.8
2,272,080 - Xcc-8004.2325.1 0.58 -0.3
2,272,080 - Xcc-8004.2325.1 0.58 -0.7
2,272,080 - Xcc-8004.2325.1 0.58 -0.4
2,272,168 + +0.3
2,272,168 + +1.7
2,272,168 + +0.6
2,272,168 + +0.3
2,272,168 + +0.5
2,272,169 - -2.0

Or see this region's nucleotide sequence