Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2320.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2319.1 and Xcc-8004.2320.1 are separated by 48 nucleotidesXcc-8004.2320.1 and Xcc-8004.2321.1 are separated by 5 nucleotidesXcc-8004.2321.1 and Xcc-8004.2322.1 overlap by 4 nucleotides Xcc-8004.2319.1: Xcc-8004.2319.1 - Acetylornithine deacetylase (EC 3.5.1.16), at 2,266,097 to 2,267,197 Xcc-8004.2319.1 Xcc-8004.2320.1: Xcc-8004.2320.1 - Acetylglutamate kinase (EC 2.7.2.8), at 2,267,246 to 2,268,589 Xcc-8004.2320.1 Xcc-8004.2321.1: Xcc-8004.2321.1 - N-acetylglutamate synthase (EC 2.3.1.1), at 2,268,595 to 2,269,206 Xcc-8004.2321.1 Xcc-8004.2322.1: Xcc-8004.2322.1 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 2,269,203 to 2,270,153 Xcc-8004.2322.1 Position (kb) 2267 2268 2269Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2266.271 kb on + strand, within Xcc-8004.2319.1at 2266.272 kb on - strand, within Xcc-8004.2319.1at 2266.272 kb on - strand, within Xcc-8004.2319.1at 2266.272 kb on - strand, within Xcc-8004.2319.1at 2266.296 kb on - strand, within Xcc-8004.2319.1at 2266.539 kb on - strand, within Xcc-8004.2319.1at 2267.072 kb on + strand, within Xcc-8004.2319.1at 2267.073 kb on - strand, within Xcc-8004.2319.1at 2267.087 kb on + strand, within Xcc-8004.2319.1at 2267.087 kb on + strand, within Xcc-8004.2319.1at 2267.087 kb on + strand, within Xcc-8004.2319.1at 2267.454 kb on + strand, within Xcc-8004.2320.1at 2267.699 kb on + strand, within Xcc-8004.2320.1at 2267.699 kb on + strand, within Xcc-8004.2320.1at 2267.699 kb on + strand, within Xcc-8004.2320.1at 2267.699 kb on + strand, within Xcc-8004.2320.1at 2267.700 kb on - strand, within Xcc-8004.2320.1at 2267.700 kb on - strand, within Xcc-8004.2320.1at 2267.867 kb on + strand, within Xcc-8004.2320.1at 2267.867 kb on + strand, within Xcc-8004.2320.1at 2267.951 kb on + strand, within Xcc-8004.2320.1at 2268.225 kb on - strand, within Xcc-8004.2320.1at 2268.254 kb on + strand, within Xcc-8004.2320.1at 2268.254 kb on + strand, within Xcc-8004.2320.1at 2268.254 kb on + strand, within Xcc-8004.2320.1at 2268.254 kb on + strand, within Xcc-8004.2320.1at 2268.254 kb on + strand, within Xcc-8004.2320.1at 2268.255 kb on - strand, within Xcc-8004.2320.1at 2268.255 kb on - strand, within Xcc-8004.2320.1at 2268.269 kb on + strand, within Xcc-8004.2320.1at 2268.326 kb on + strand, within Xcc-8004.2320.1at 2268.327 kb on - strand, within Xcc-8004.2320.1at 2268.327 kb on - strand, within Xcc-8004.2320.1at 2268.458 kb on + strandat 2268.458 kb on + strandat 2268.459 kb on - strandat 2268.461 kb on + strandat 2268.736 kb on + strand, within Xcc-8004.2321.1at 2268.772 kb on + strand, within Xcc-8004.2321.1at 2268.772 kb on + strand, within Xcc-8004.2321.1at 2268.773 kb on - strand, within Xcc-8004.2321.1at 2268.866 kb on - strand, within Xcc-8004.2321.1at 2268.866 kb on - strand, within Xcc-8004.2321.1at 2268.868 kb on + strand, within Xcc-8004.2321.1at 2268.868 kb on + strand, within Xcc-8004.2321.1at 2268.868 kb on + strand, within Xcc-8004.2321.1at 2268.869 kb on - strand, within Xcc-8004.2321.1at 2269.359 kb on + strand, within Xcc-8004.2322.1at 2269.360 kb on - strand, within Xcc-8004.2322.1at 2269.360 kb on - strand, within Xcc-8004.2322.1at 2269.542 kb on + strand, within Xcc-8004.2322.1at 2269.542 kb on + strand, within Xcc-8004.2322.1at 2269.542 kb on + strand, within Xcc-8004.2322.1at 2269.543 kb on - strand, within Xcc-8004.2322.1at 2269.543 kb on - strand, within Xcc-8004.2322.1at 2269.545 kb on + strand, within Xcc-8004.2322.1at 2269.545 kb on + strand, within Xcc-8004.2322.1at 2269.546 kb on - strand, within Xcc-8004.2322.1at 2269.546 kb on - strand, within Xcc-8004.2322.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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2,266,271 + Xcc-8004.2319.1 0.16 -0.8
2,266,272 - Xcc-8004.2319.1 0.16 -3.6
2,266,272 - Xcc-8004.2319.1 0.16 -2.4
2,266,272 - Xcc-8004.2319.1 0.16 -0.0
2,266,296 - Xcc-8004.2319.1 0.18 -1.7
2,266,539 - Xcc-8004.2319.1 0.40 -2.7
2,267,072 + Xcc-8004.2319.1 0.89 -4.3
2,267,073 - Xcc-8004.2319.1 0.89 -3.2
2,267,087 + Xcc-8004.2319.1 0.90 -1.9
2,267,087 + Xcc-8004.2319.1 0.90 -1.9
2,267,087 + Xcc-8004.2319.1 0.90 -1.3
2,267,454 + Xcc-8004.2320.1 0.15 -2.6
2,267,699 + Xcc-8004.2320.1 0.34 -1.3
2,267,699 + Xcc-8004.2320.1 0.34 -2.6
2,267,699 + Xcc-8004.2320.1 0.34 -3.0
2,267,699 + Xcc-8004.2320.1 0.34 -1.6
2,267,700 - Xcc-8004.2320.1 0.34 -0.7
2,267,700 - Xcc-8004.2320.1 0.34 +0.1
2,267,867 + Xcc-8004.2320.1 0.46 -0.7
2,267,867 + Xcc-8004.2320.1 0.46 -1.4
2,267,951 + Xcc-8004.2320.1 0.52 -2.2
2,268,225 - Xcc-8004.2320.1 0.73 -2.0
2,268,254 + Xcc-8004.2320.1 0.75 -2.4
2,268,254 + Xcc-8004.2320.1 0.75 -2.6
2,268,254 + Xcc-8004.2320.1 0.75 -2.8
2,268,254 + Xcc-8004.2320.1 0.75 -1.0
2,268,254 + Xcc-8004.2320.1 0.75 -2.4
2,268,255 - Xcc-8004.2320.1 0.75 -3.2
2,268,255 - Xcc-8004.2320.1 0.75 -1.7
2,268,269 + Xcc-8004.2320.1 0.76 -2.5
2,268,326 + Xcc-8004.2320.1 0.80 -2.0
2,268,327 - Xcc-8004.2320.1 0.80 -0.6
2,268,327 - Xcc-8004.2320.1 0.80 -2.7
2,268,458 + -1.3
2,268,458 + -1.9
2,268,459 - -1.7
2,268,461 + -0.6
2,268,736 + Xcc-8004.2321.1 0.23 +1.1
2,268,772 + Xcc-8004.2321.1 0.29 +1.3
2,268,772 + Xcc-8004.2321.1 0.29 -0.1
2,268,773 - Xcc-8004.2321.1 0.29 +0.1
2,268,866 - Xcc-8004.2321.1 0.44 -2.2
2,268,866 - Xcc-8004.2321.1 0.44 -1.4
2,268,868 + Xcc-8004.2321.1 0.45 +0.3
2,268,868 + Xcc-8004.2321.1 0.45 +0.1
2,268,868 + Xcc-8004.2321.1 0.45 -0.5
2,268,869 - Xcc-8004.2321.1 0.45 -0.1
2,269,359 + Xcc-8004.2322.1 0.16 -0.3
2,269,360 - Xcc-8004.2322.1 0.17 -1.6
2,269,360 - Xcc-8004.2322.1 0.17 -2.2
2,269,542 + Xcc-8004.2322.1 0.36 -3.0
2,269,542 + Xcc-8004.2322.1 0.36 -3.2
2,269,542 + Xcc-8004.2322.1 0.36 -2.4
2,269,543 - Xcc-8004.2322.1 0.36 -1.4
2,269,543 - Xcc-8004.2322.1 0.36 -4.2
2,269,545 + Xcc-8004.2322.1 0.36 -1.5
2,269,545 + Xcc-8004.2322.1 0.36 -1.6
2,269,546 - Xcc-8004.2322.1 0.36 -2.2
2,269,546 - Xcc-8004.2322.1 0.36 -1.7

Or see this region's nucleotide sequence