Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2316.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,262,280	+				-0.7
2,262,280	+				-0.0
2,262,280	+				-0.6
2,262,280	+				-0.0
2,262,281	-				+0.9
2,262,281	-				-0.5
2,262,281	-				+0.1
2,262,286	+				-1.2
2,262,286	+				+0.7
2,262,286	+				+0.3
2,262,286	+				-1.1
2,262,287	-				+0.7
2,262,287	-				-0.4
2,262,287	-				+0.3
2,262,287	-				+0.7
2,262,287	-				+0.3
2,262,287	-				-0.2
2,262,290	+				+0.2
2,262,290	+				-0.0
2,262,290	+				-1.6
2,262,290	+				-0.3
2,262,290	+				-0.3
2,262,291	-				-2.6
2,262,291	-				+0.3
2,262,291	-				-0.3
2,262,436	+		Xcc-8004.2314.1	0.27	+0.3
2,262,436	+		Xcc-8004.2314.1	0.27	-0.7
2,262,436	+		Xcc-8004.2314.1	0.27	-1.0
2,262,437	-		Xcc-8004.2314.1	0.27	-1.2
2,262,437	-		Xcc-8004.2314.1	0.27	-0.4
2,262,450	+		Xcc-8004.2314.1	0.29	+0.2
2,262,450	+		Xcc-8004.2314.1	0.29	-0.3
2,262,450	+		Xcc-8004.2314.1	0.29	+0.3
2,262,467	-		Xcc-8004.2314.1	0.32	-2.0
2,262,715	+		Xcc-8004.2314.1	0.78	+0.2
2,262,715	+		Xcc-8004.2314.1	0.78	-0.0
2,262,715	+		Xcc-8004.2314.1	0.78	-1.6
2,262,715	+		Xcc-8004.2314.1	0.78	-0.0
2,262,715	+		Xcc-8004.2314.1	0.78	-2.1
2,262,715	+		Xcc-8004.2314.1	0.78	+0.7
2,262,716	-		Xcc-8004.2314.1	0.78	-1.2
2,262,716	-		Xcc-8004.2314.1	0.78	-0.9
2,262,716	-		Xcc-8004.2314.1	0.78	-1.1
2,262,716	-		Xcc-8004.2314.1	0.78	-0.2
2,262,716	-		Xcc-8004.2314.1	0.78	-0.1
2,262,716	-		Xcc-8004.2314.1	0.78	-1.3
2,262,716	-		Xcc-8004.2314.1	0.78	+0.5
2,262,716	-		Xcc-8004.2314.1	0.78	-0.5
2,262,716	-		Xcc-8004.2314.1	0.78	-0.9
2,262,721	+		Xcc-8004.2314.1	0.79	-0.5
2,262,721	+		Xcc-8004.2314.1	0.79	-1.0
2,262,721	+		Xcc-8004.2314.1	0.79	-0.5
2,262,721	+		Xcc-8004.2314.1	0.79	-0.7
2,262,721	+		Xcc-8004.2314.1	0.79	-0.4
2,262,722	-		Xcc-8004.2314.1	0.79	-1.8
2,262,722	-		Xcc-8004.2314.1	0.79	-0.0
2,262,722	-		Xcc-8004.2314.1	0.79	-0.5
2,262,722	-		Xcc-8004.2314.1	0.79	-1.8
2,262,722	-		Xcc-8004.2314.1	0.79	-0.0
2,262,736	+		Xcc-8004.2314.1	0.82	+1.0
2,262,737	-		Xcc-8004.2314.1	0.82	-1.8
2,262,737	-		Xcc-8004.2314.1	0.82	-1.2
2,262,737	-		Xcc-8004.2314.1	0.82	-1.1
2,262,737	-		Xcc-8004.2314.1	0.82	-1.6
2,262,799	+				-1.2
2,262,799	+				-0.5
2,262,799	+				-0.5
2,262,799	+				-0.8
2,262,800	-				-2.4
2,262,800	-				-1.9
2,262,884	+				-0.5
2,262,884	+				+0.2
2,262,884	+				-2.2
2,262,885	-				-0.3
2,262,885	-				-1.4
2,263,123	+				-1.4
2,263,123	+				+0.2
2,263,124	-				-0.7
2,263,124	-				-0.8
2,263,124	-				-0.1
2,263,124	-				-0.8
2,263,124	-				-1.3
2,263,124	-				-1.9
2,263,124	-				-0.7
2,263,124	-				-1.4
2,263,124	-				-0.7
2,263,456	+		Xcc-8004.2316.1	0.31	-2.1
2,263,456	+		Xcc-8004.2316.1	0.31	-2.2
2,263,456	+		Xcc-8004.2316.1	0.31	-1.3
2,263,546	+		Xcc-8004.2316.1	0.39	-3.7
2,263,547	-		Xcc-8004.2316.1	0.40	-3.1
2,263,547	-		Xcc-8004.2316.1	0.40	-1.6
2,263,547	-		Xcc-8004.2316.1	0.40	-1.4
2,263,660	+		Xcc-8004.2316.1	0.51	-2.0
2,263,660	+		Xcc-8004.2316.1	0.51	-1.7
2,263,661	-		Xcc-8004.2316.1	0.51	-2.5
2,263,661	-		Xcc-8004.2316.1	0.51	-3.1
2,263,661	-		Xcc-8004.2316.1	0.51	-0.4
2,263,661	-		Xcc-8004.2316.1	0.51	-2.1
2,263,661	-		Xcc-8004.2316.1	0.51	-2.0
2,263,661	-		Xcc-8004.2316.1	0.51	-1.8
2,263,661	-		Xcc-8004.2316.1	0.51	-1.8
2,263,678	+		Xcc-8004.2316.1	0.52	-1.8
2,263,678	+		Xcc-8004.2316.1	0.52	-2.6
2,263,678	+		Xcc-8004.2316.1	0.52	-0.8
2,263,678	+		Xcc-8004.2316.1	0.52	+0.2
2,263,678	+		Xcc-8004.2316.1	0.52	-2.5
2,263,679	-		Xcc-8004.2316.1	0.52	-0.8
2,263,679	-		Xcc-8004.2316.1	0.52	-3.7
2,263,679	-		Xcc-8004.2316.1	0.52	-1.1
2,263,679	-		Xcc-8004.2316.1	0.52	-2.5
2,263,679	-		Xcc-8004.2316.1	0.52	-0.6
2,263,679	-		Xcc-8004.2316.1	0.52	-4.0
2,263,679	-		Xcc-8004.2316.1	0.52	-2.5
2,263,679	-		Xcc-8004.2316.1	0.52	-0.8
2,263,777	+		Xcc-8004.2316.1	0.62	-1.4
2,263,777	+		Xcc-8004.2316.1	0.62	-2.6
2,263,777	+		Xcc-8004.2316.1	0.62	-1.3
2,263,778	-		Xcc-8004.2316.1	0.62	-4.1
2,263,778	-		Xcc-8004.2316.1	0.62	-2.4
2,263,778	-		Xcc-8004.2316.1	0.62	-1.0
2,263,778	-		Xcc-8004.2316.1	0.62	+1.2
2,263,795	+		Xcc-8004.2316.1	0.64	-3.8
2,263,795	+		Xcc-8004.2316.1	0.64	-1.4
2,263,795	+		Xcc-8004.2316.1	0.64	-2.7
2,263,795	+		Xcc-8004.2316.1	0.64	-3.9
2,263,796	-		Xcc-8004.2316.1	0.64	-0.6
2,263,796	-		Xcc-8004.2316.1	0.64	-2.5
2,263,796	-		Xcc-8004.2316.1	0.64	-2.1
2,263,796	-		Xcc-8004.2316.1	0.64	-3.8
2,263,870	+		Xcc-8004.2316.1	0.71	-1.4
2,263,871	-		Xcc-8004.2316.1	0.71	-2.8
2,263,871	-		Xcc-8004.2316.1	0.71	-1.1
2,263,871	-		Xcc-8004.2316.1	0.71	-3.0
2,263,892	-		Xcc-8004.2316.1	0.73	-2.1
2,263,892	-		Xcc-8004.2316.1	0.73	-1.4
2,263,892	-		Xcc-8004.2316.1	0.73	-1.3
2,263,892	-		Xcc-8004.2316.1	0.73	-1.4
2,263,892	-		Xcc-8004.2316.1	0.73	-2.1
2,263,892	-		Xcc-8004.2316.1	0.73	-2.2
2,263,960	+		Xcc-8004.2316.1	0.80	-3.2
2,263,960	+		Xcc-8004.2316.1	0.80	-2.7
2,263,961	-		Xcc-8004.2316.1	0.80	-3.4
2,264,052	+		Xcc-8004.2316.1	0.89	+0.2
2,264,181	+				-1.0
2,264,182	-				-2.6
2,264,233	-		Xcc-8004.2317.1	0.15	-1.0
2,264,233	-		Xcc-8004.2317.1	0.15	-2.2
2,264,241	+		Xcc-8004.2317.1	0.17	-0.7
2,264,382	+		Xcc-8004.2317.1	0.47	+0.3
2,264,383	-		Xcc-8004.2317.1	0.47	-0.2
2,264,676	-				-2.3
2,264,922	+		Xcc-8004.2318.1	0.22	-1.7
2,264,947	-		Xcc-8004.2318.1	0.24	-1.2
2,265,072	+		Xcc-8004.2318.1	0.34	-2.9
2,265,142	-		Xcc-8004.2318.1	0.40	-2.8