Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2292.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,242,153	+		Xcc-8004.2290.1	0.77	-0.0
2,242,153	+		Xcc-8004.2290.1	0.77	-0.3
2,242,153	+		Xcc-8004.2290.1	0.77	-0.0
2,242,153	+		Xcc-8004.2290.1	0.77	-0.6
2,242,153	+		Xcc-8004.2290.1	0.77	-1.1
2,242,154	-		Xcc-8004.2290.1	0.77	+0.2
2,242,154	-		Xcc-8004.2290.1	0.77	+0.0
2,242,154	-		Xcc-8004.2290.1	0.77	+0.8
2,242,154	-		Xcc-8004.2290.1	0.77	+1.0
2,242,154	-		Xcc-8004.2290.1	0.77	+0.3
2,242,154	-		Xcc-8004.2290.1	0.77	+0.4
2,242,985	+				-2.7
2,242,985	+				-0.2
2,243,108	+				-1.0
2,243,108	+				-0.6
2,243,108	+				-0.5
2,243,108	+				-0.4
2,243,108	+				+1.2
2,243,109	-				-0.3
2,243,109	-				-0.4
2,243,109	-				+0.6
2,243,138	+				-0.4
2,243,397	-		Xcc-8004.2292.1	0.17	-1.6
2,243,397	-		Xcc-8004.2292.1	0.17	-0.7
2,243,397	-		Xcc-8004.2292.1	0.17	-0.6
2,243,504	+		Xcc-8004.2292.1	0.23	+0.5
2,243,504	+		Xcc-8004.2292.1	0.23	+0.5
2,243,505	-		Xcc-8004.2292.1	0.23	+1.4
2,243,518	+		Xcc-8004.2292.1	0.24	-0.8
2,243,571	-		Xcc-8004.2292.1	0.27	+0.0
2,243,604	+		Xcc-8004.2292.1	0.29	-0.8
2,243,735	+		Xcc-8004.2292.1	0.37	+0.3
2,243,735	+		Xcc-8004.2292.1	0.37	+0.2
2,243,736	-		Xcc-8004.2292.1	0.37	-0.4
2,243,739	-		Xcc-8004.2292.1	0.37	+0.4
2,243,835	+		Xcc-8004.2292.1	0.42	+0.2
2,243,837	+		Xcc-8004.2292.1	0.42	+0.3
2,243,838	-		Xcc-8004.2292.1	0.43	+0.7
2,243,838	-		Xcc-8004.2292.1	0.43	+0.3
2,243,838	-		Xcc-8004.2292.1	0.43	-0.3
2,243,838	-		Xcc-8004.2292.1	0.43	+0.5
2,244,026	+		Xcc-8004.2292.1	0.53	-1.2
2,244,036	+		Xcc-8004.2292.1	0.54	+0.4
2,244,037	-		Xcc-8004.2292.1	0.54	+0.2
2,244,037	-		Xcc-8004.2292.1	0.54	-0.0
2,244,129	-		Xcc-8004.2292.1	0.59	+0.4
2,244,207	-		Xcc-8004.2292.1	0.64	-0.6
2,244,392	+		Xcc-8004.2292.1	0.75	-0.6
2,244,728	-				-0.8
2,244,893	+				-1.0
2,244,894	-				-0.1
2,244,894	-				+0.7
2,245,002	+				-0.3
2,245,003	-				-0.1
2,245,003	-				-0.5
2,245,003	-				-1.1
2,245,003	-				+0.7
2,245,155	-				-0.6
2,245,199	+				+0.2
2,245,234	+				-0.7
2,245,235	-				+0.2
2,245,331	-				-0.2
2,245,331	-				-0.5
2,245,405	+				+0.8
2,245,405	+				-1.1
2,245,406	-				+0.5
2,245,406	-				-1.7
2,245,406	-				+0.0
2,245,406	-				-0.1
2,245,497	+				-2.1
2,245,622	-				+0.3
2,245,776	+		Xcc-8004.2293.1	0.17	-0.3