Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2233.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2231.1 and Xcc-8004.2232.1 are separated by 99 nucleotidesXcc-8004.2232.1 and Xcc-8004.2233.1 are separated by 13 nucleotidesXcc-8004.2233.1 and Xcc-8004.2234.1 are separated by 113 nucleotidesXcc-8004.2234.1 and Xcc-8004.2235.1 are separated by 359 nucleotides Xcc-8004.2231.1: Xcc-8004.2231.1 - Stringent starvation protein A, at 2,181,907 to 2,182,542 Xcc-8004.2231.1 Xcc-8004.2232.1: Xcc-8004.2232.1 - Stringent starvation protein B, at 2,182,642 to 2,183,064 Xcc-8004.2232.1 Xcc-8004.2233.1: Xcc-8004.2233.1 - FIG01211497: hypothetical protein, at 2,183,078 to 2,183,428 Xcc-8004.2233.1 Xcc-8004.2234.1: Xcc-8004.2234.1 - FIG01210056: hypothetical protein, at 2,183,542 to 2,183,922 Xcc-8004.2234.1 Xcc-8004.2235.1: Xcc-8004.2235.1 - Lhr-like helicases, at 2,184,282 to 2,188,676 Xcc-8004.2235.1 Position (kb) 2183 2184Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2182.115 kb on - strand, within Xcc-8004.2231.1at 2182.138 kb on + strand, within Xcc-8004.2231.1at 2182.138 kb on + strand, within Xcc-8004.2231.1at 2182.138 kb on + strand, within Xcc-8004.2231.1at 2182.139 kb on - strand, within Xcc-8004.2231.1at 2182.139 kb on - strand, within Xcc-8004.2231.1at 2182.139 kb on - strand, within Xcc-8004.2231.1at 2182.459 kb on + strand, within Xcc-8004.2231.1at 2182.459 kb on + strand, within Xcc-8004.2231.1at 2182.459 kb on + strand, within Xcc-8004.2231.1at 2182.460 kb on - strand, within Xcc-8004.2231.1at 2182.460 kb on - strand, within Xcc-8004.2231.1at 2182.460 kb on - strand, within Xcc-8004.2231.1at 2182.460 kb on - strand, within Xcc-8004.2231.1at 2182.460 kb on - strand, within Xcc-8004.2231.1at 2182.554 kb on + strandat 2182.554 kb on + strandat 2182.554 kb on + strandat 2182.554 kb on + strandat 2182.555 kb on - strandat 2182.555 kb on - strandat 2182.555 kb on - strandat 2182.555 kb on - strandat 2182.660 kb on + strandat 2182.661 kb on - strandat 2182.661 kb on - strandat 2182.676 kb on + strandat 2182.677 kb on - strandat 2182.677 kb on - strandat 2182.713 kb on + strand, within Xcc-8004.2232.1at 2182.713 kb on + strand, within Xcc-8004.2232.1at 2182.867 kb on + strand, within Xcc-8004.2232.1at 2182.867 kb on + strand, within Xcc-8004.2232.1at 2182.906 kb on + strand, within Xcc-8004.2232.1at 2182.906 kb on + strand, within Xcc-8004.2232.1at 2182.906 kb on + strand, within Xcc-8004.2232.1at 2182.906 kb on + strand, within Xcc-8004.2232.1at 2182.906 kb on + strand, within Xcc-8004.2232.1at 2182.906 kb on + strand, within Xcc-8004.2232.1at 2182.906 kb on + strand, within Xcc-8004.2232.1at 2182.906 kb on + strand, within Xcc-8004.2232.1at 2182.907 kb on - strand, within Xcc-8004.2232.1at 2182.907 kb on - strand, within Xcc-8004.2232.1at 2182.907 kb on - strand, within Xcc-8004.2232.1at 2182.907 kb on - strand, within Xcc-8004.2232.1at 2182.907 kb on - strand, within Xcc-8004.2232.1at 2182.907 kb on - strand, within Xcc-8004.2232.1at 2182.907 kb on - strand, within Xcc-8004.2232.1at 2182.907 kb on - strand, within Xcc-8004.2232.1at 2182.907 kb on - strand, within Xcc-8004.2232.1at 2182.907 kb on - strand, within Xcc-8004.2232.1at 2182.984 kb on - strand, within Xcc-8004.2232.1at 2183.062 kb on + strandat 2183.062 kb on + strandat 2183.062 kb on + strandat 2183.062 kb on + strandat 2183.063 kb on - strandat 2183.063 kb on - strandat 2183.063 kb on - strandat 2183.063 kb on - strandat 2183.153 kb on + strand, within Xcc-8004.2233.1at 2183.154 kb on - strand, within Xcc-8004.2233.1at 2183.159 kb on + strand, within Xcc-8004.2233.1at 2183.159 kb on + strand, within Xcc-8004.2233.1at 2183.159 kb on + strand, within Xcc-8004.2233.1at 2183.159 kb on + strand, within Xcc-8004.2233.1at 2183.159 kb on + strand, within Xcc-8004.2233.1at 2183.159 kb on + strand, within Xcc-8004.2233.1at 2183.165 kb on + strand, within Xcc-8004.2233.1at 2183.166 kb on - strand, within Xcc-8004.2233.1at 2183.171 kb on + strand, within Xcc-8004.2233.1at 2183.180 kb on + strand, within Xcc-8004.2233.1at 2183.180 kb on + strand, within Xcc-8004.2233.1at 2183.180 kb on + strand, within Xcc-8004.2233.1at 2183.180 kb on + strand, within Xcc-8004.2233.1at 2183.180 kb on + strand, within Xcc-8004.2233.1at 2183.180 kb on + strand, within Xcc-8004.2233.1at 2183.181 kb on - strand, within Xcc-8004.2233.1at 2183.181 kb on - strand, within Xcc-8004.2233.1at 2183.181 kb on - strand, within Xcc-8004.2233.1at 2183.181 kb on - strand, within Xcc-8004.2233.1at 2183.218 kb on + strand, within Xcc-8004.2233.1at 2183.218 kb on + strand, within Xcc-8004.2233.1at 2183.219 kb on - strand, within Xcc-8004.2233.1at 2183.219 kb on - strand, within Xcc-8004.2233.1at 2183.219 kb on - strand, within Xcc-8004.2233.1at 2183.219 kb on - strand, within Xcc-8004.2233.1at 2183.219 kb on - strand, within Xcc-8004.2233.1at 2183.219 kb on - strand, within Xcc-8004.2233.1at 2183.219 kb on - strand, within Xcc-8004.2233.1at 2183.222 kb on + strand, within Xcc-8004.2233.1at 2183.222 kb on + strand, within Xcc-8004.2233.1at 2183.223 kb on - strand, within Xcc-8004.2233.1at 2183.223 kb on - strand, within Xcc-8004.2233.1at 2183.223 kb on - strand, within Xcc-8004.2233.1at 2183.223 kb on - strand, within Xcc-8004.2233.1at 2183.333 kb on + strand, within Xcc-8004.2233.1at 2183.333 kb on + strand, within Xcc-8004.2233.1at 2183.390 kb on + strand, within Xcc-8004.2233.1at 2183.390 kb on + strand, within Xcc-8004.2233.1at 2183.491 kb on + strandat 2183.491 kb on + strandat 2183.508 kb on + strandat 2183.508 kb on + strandat 2183.508 kb on + strandat 2183.509 kb on - strandat 2183.509 kb on - strandat 2183.509 kb on - strandat 2183.509 kb on - strandat 2183.512 kb on + strandat 2183.587 kb on + strand, within Xcc-8004.2234.1at 2183.588 kb on - strand, within Xcc-8004.2234.1at 2183.588 kb on - strand, within Xcc-8004.2234.1at 2183.588 kb on - strand, within Xcc-8004.2234.1at 2183.843 kb on + strand, within Xcc-8004.2234.1at 2183.843 kb on + strand, within Xcc-8004.2234.1at 2183.843 kb on + strand, within Xcc-8004.2234.1at 2183.844 kb on - strand, within Xcc-8004.2234.1at 2183.844 kb on - strand, within Xcc-8004.2234.1at 2183.844 kb on - strand, within Xcc-8004.2234.1at 2183.844 kb on - strand, within Xcc-8004.2234.1at 2184.090 kb on - strandat 2184.111 kb on + strandat 2184.111 kb on + strandat 2184.111 kb on + strandat 2184.112 kb on - strandat 2184.112 kb on - strandat 2184.112 kb on - strandat 2184.112 kb on - strandat 2184.157 kb on - strandat 2184.157 kb on - strandat 2184.216 kb on + strandat 2184.216 kb on + strandat 2184.216 kb on + strandat 2184.217 kb on - strandat 2184.217 kb on - strandat 2184.217 kb on - strandat 2184.335 kb on + strandat 2184.335 kb on + strandat 2184.335 kb on + strandat 2184.336 kb on - strandat 2184.336 kb on - strandat 2184.336 kb on - strandat 2184.336 kb on - strandat 2184.336 kb on - strandat 2184.398 kb on + strandat 2184.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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2,182,115 - Xcc-8004.2231.1 0.33 +1.7
2,182,138 + Xcc-8004.2231.1 0.36 +0.5
2,182,138 + Xcc-8004.2231.1 0.36 +0.7
2,182,138 + Xcc-8004.2231.1 0.36 +0.7
2,182,139 - Xcc-8004.2231.1 0.36 +0.6
2,182,139 - Xcc-8004.2231.1 0.36 -1.7
2,182,139 - Xcc-8004.2231.1 0.36 -0.3
2,182,459 + Xcc-8004.2231.1 0.87 -0.3
2,182,459 + Xcc-8004.2231.1 0.87 -0.6
2,182,459 + Xcc-8004.2231.1 0.87 +0.6
2,182,460 - Xcc-8004.2231.1 0.87 +0.4
2,182,460 - Xcc-8004.2231.1 0.87 +0.1
2,182,460 - Xcc-8004.2231.1 0.87 -0.4
2,182,460 - Xcc-8004.2231.1 0.87 +0.3
2,182,460 - Xcc-8004.2231.1 0.87 +0.6
2,182,554 + -0.1
2,182,554 + +2.1
2,182,554 + -0.2
2,182,554 + +0.6
2,182,555 - +0.6
2,182,555 - +2.1
2,182,555 - -0.2
2,182,555 - -0.3
2,182,660 + +0.8
2,182,661 - +0.7
2,182,661 - -0.9
2,182,676 + +0.5
2,182,677 - -0.4
2,182,677 - -0.5
2,182,713 + Xcc-8004.2232.1 0.17 -0.5
2,182,713 + Xcc-8004.2232.1 0.17 +0.4
2,182,867 + Xcc-8004.2232.1 0.53 +0.1
2,182,867 + Xcc-8004.2232.1 0.53 +0.9
2,182,906 + Xcc-8004.2232.1 0.62 +0.3
2,182,906 + Xcc-8004.2232.1 0.62 -0.2
2,182,906 + Xcc-8004.2232.1 0.62 +0.5
2,182,906 + Xcc-8004.2232.1 0.62 +3.3
2,182,906 + Xcc-8004.2232.1 0.62 +1.0
2,182,906 + Xcc-8004.2232.1 0.62 +0.4
2,182,906 + Xcc-8004.2232.1 0.62 +0.1
2,182,906 + Xcc-8004.2232.1 0.62 +1.1
2,182,907 - Xcc-8004.2232.1 0.63 +1.0
2,182,907 - Xcc-8004.2232.1 0.63 +1.0
2,182,907 - Xcc-8004.2232.1 0.63 +0.4
2,182,907 - Xcc-8004.2232.1 0.63 -0.2
2,182,907 - Xcc-8004.2232.1 0.63 +0.4
2,182,907 - Xcc-8004.2232.1 0.63 +0.9
2,182,907 - Xcc-8004.2232.1 0.63 -0.4
2,182,907 - Xcc-8004.2232.1 0.63 -0.4
2,182,907 - Xcc-8004.2232.1 0.63 -0.3
2,182,907 - Xcc-8004.2232.1 0.63 -0.2
2,182,984 - Xcc-8004.2232.1 0.81 +1.4
2,183,062 + -0.3
2,183,062 + +0.4
2,183,062 + -0.2
2,183,062 + -0.1
2,183,063 - +1.2
2,183,063 - +0.9
2,183,063 - +0.1
2,183,063 - -0.3
2,183,153 + Xcc-8004.2233.1 0.21 -0.3
2,183,154 - Xcc-8004.2233.1 0.22 -0.0
2,183,159 + Xcc-8004.2233.1 0.23 -1.2
2,183,159 + Xcc-8004.2233.1 0.23 -1.7
2,183,159 + Xcc-8004.2233.1 0.23 -1.0
2,183,159 + Xcc-8004.2233.1 0.23 -0.3
2,183,159 + Xcc-8004.2233.1 0.23 +1.1
2,183,159 + Xcc-8004.2233.1 0.23 +0.2
2,183,165 + Xcc-8004.2233.1 0.25 -0.3
2,183,166 - Xcc-8004.2233.1 0.25 +0.0
2,183,171 + Xcc-8004.2233.1 0.26 +0.1
2,183,180 + Xcc-8004.2233.1 0.29 +0.5
2,183,180 + Xcc-8004.2233.1 0.29 +0.9
2,183,180 + Xcc-8004.2233.1 0.29 -0.3
2,183,180 + Xcc-8004.2233.1 0.29 -0.3
2,183,180 + Xcc-8004.2233.1 0.29 +0.6
2,183,180 + Xcc-8004.2233.1 0.29 -0.7
2,183,181 - Xcc-8004.2233.1 0.29 -0.1
2,183,181 - Xcc-8004.2233.1 0.29 +1.2
2,183,181 - Xcc-8004.2233.1 0.29 -0.4
2,183,181 - Xcc-8004.2233.1 0.29 -1.0
2,183,218 + Xcc-8004.2233.1 0.40 +0.1
2,183,218 + Xcc-8004.2233.1 0.40 +0.3
2,183,219 - Xcc-8004.2233.1 0.40 -0.1
2,183,219 - Xcc-8004.2233.1 0.40 -0.2
2,183,219 - Xcc-8004.2233.1 0.40 +0.0
2,183,219 - Xcc-8004.2233.1 0.40 -0.2
2,183,219 - Xcc-8004.2233.1 0.40 -0.5
2,183,219 - Xcc-8004.2233.1 0.40 -0.8
2,183,219 - Xcc-8004.2233.1 0.40 -0.9
2,183,222 + Xcc-8004.2233.1 0.41 -0.2
2,183,222 + Xcc-8004.2233.1 0.41 +0.5
2,183,223 - Xcc-8004.2233.1 0.41 +0.4
2,183,223 - Xcc-8004.2233.1 0.41 -2.1
2,183,223 - Xcc-8004.2233.1 0.41 +0.2
2,183,223 - Xcc-8004.2233.1 0.41 +0.0
2,183,333 + Xcc-8004.2233.1 0.73 -1.2
2,183,333 + Xcc-8004.2233.1 0.73 -1.1
2,183,390 + Xcc-8004.2233.1 0.89 +0.1
2,183,390 + Xcc-8004.2233.1 0.89 -0.5
2,183,491 + +0.4
2,183,491 + +1.3
2,183,508 + -0.2
2,183,508 + +0.1
2,183,508 + -0.6
2,183,509 - +1.5
2,183,509 - +0.4
2,183,509 - +0.8
2,183,509 - -0.6
2,183,512 + +1.1
2,183,587 + Xcc-8004.2234.1 0.12 -1.1
2,183,588 - Xcc-8004.2234.1 0.12 -0.7
2,183,588 - Xcc-8004.2234.1 0.12 -0.9
2,183,588 - Xcc-8004.2234.1 0.12 +1.5
2,183,843 + Xcc-8004.2234.1 0.79 -0.3
2,183,843 + Xcc-8004.2234.1 0.79 +0.2
2,183,843 + Xcc-8004.2234.1 0.79 +1.2
2,183,844 - Xcc-8004.2234.1 0.79 -0.1
2,183,844 - Xcc-8004.2234.1 0.79 -0.1
2,183,844 - Xcc-8004.2234.1 0.79 -2.1
2,183,844 - Xcc-8004.2234.1 0.79 +1.0
2,184,090 - +0.9
2,184,111 + -0.2
2,184,111 + -0.9
2,184,111 + -0.6
2,184,112 - -0.4
2,184,112 - +0.0
2,184,112 - -0.4
2,184,112 - -0.8
2,184,157 - +1.7
2,184,157 - +1.3
2,184,216 + +0.6
2,184,216 + -0.5
2,184,216 + -1.2
2,184,217 - +0.4
2,184,217 - +0.8
2,184,217 - -0.7
2,184,335 + +0.2
2,184,335 + -0.0
2,184,335 + +1.4
2,184,336 - +0.7
2,184,336 - +1.2
2,184,336 - +0.5
2,184,336 - -0.4
2,184,336 - +0.6
2,184,398 + +0.6
2,184,399 - +0.0

Or see this region's nucleotide sequence