Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2217.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2216.1 and Xcc-8004.2217.1 are separated by 14 nucleotidesXcc-8004.2217.1 and Xcc-8004.2219.1 overlap by 4 nucleotides Xcc-8004.2216.1: Xcc-8004.2216.1 - Magnesium and cobalt transport protein CorA, at 2,167,201 to 2,168,199 Xcc-8004.2216.1 Xcc-8004.2217.1: Xcc-8004.2217.1 - FIG01209779: hypothetical protein, at 2,168,214 to 2,169,452 Xcc-8004.2217.1 Xcc-8004.2219.1: Xcc-8004.2219.1 - Magnesium and cobalt efflux protein CorC, at 2,169,449 to 2,170,345 Xcc-8004.2219.1 Position (kb) 2168 2169 2170Strain fitness (log2 ratio) -3 -2 -1 0 1at 2167.277 kb on + strandat 2167.305 kb on + strand, within Xcc-8004.2216.1at 2167.305 kb on + strand, within Xcc-8004.2216.1at 2167.306 kb on - strand, within Xcc-8004.2216.1at 2167.508 kb on + strand, within Xcc-8004.2216.1at 2167.509 kb on - strand, within Xcc-8004.2216.1at 2167.509 kb on - strand, within Xcc-8004.2216.1at 2167.509 kb on - strand, within Xcc-8004.2216.1at 2167.622 kb on + strand, within Xcc-8004.2216.1at 2167.649 kb on + strand, within Xcc-8004.2216.1at 2167.649 kb on + strand, within Xcc-8004.2216.1at 2167.649 kb on + strand, within Xcc-8004.2216.1at 2167.649 kb on + strand, within Xcc-8004.2216.1at 2167.650 kb on - strand, within Xcc-8004.2216.1at 2167.650 kb on - strand, within Xcc-8004.2216.1at 2167.718 kb on + strand, within Xcc-8004.2216.1at 2167.718 kb on + strand, within Xcc-8004.2216.1at 2167.718 kb on + strand, within Xcc-8004.2216.1at 2167.718 kb on + strand, within Xcc-8004.2216.1at 2167.719 kb on - strand, within Xcc-8004.2216.1at 2167.719 kb on - strand, within Xcc-8004.2216.1at 2167.719 kb on - strand, within Xcc-8004.2216.1at 2167.748 kb on + strand, within Xcc-8004.2216.1at 2167.947 kb on - strand, within Xcc-8004.2216.1at 2167.947 kb on - strand, within Xcc-8004.2216.1at 2168.054 kb on + strand, within Xcc-8004.2216.1at 2168.089 kb on + strand, within Xcc-8004.2216.1at 2168.089 kb on + strand, within Xcc-8004.2216.1at 2168.090 kb on - strand, within Xcc-8004.2216.1at 2168.090 kb on - strand, within Xcc-8004.2216.1at 2168.090 kb on - strand, within Xcc-8004.2216.1at 2168.090 kb on - strand, within Xcc-8004.2216.1at 2168.144 kb on + strandat 2168.144 kb on + strandat 2168.144 kb on + strandat 2168.145 kb on - strandat 2168.145 kb on - strandat 2168.145 kb on - strandat 2168.145 kb on - strandat 2168.145 kb on - strandat 2168.145 kb on - strandat 2168.469 kb on - strand, within Xcc-8004.2217.1at 2168.512 kb on + strand, within Xcc-8004.2217.1at 2168.512 kb on + strand, within Xcc-8004.2217.1at 2168.512 kb on + strand, within Xcc-8004.2217.1at 2168.513 kb on - strand, within Xcc-8004.2217.1at 2168.513 kb on - strand, within Xcc-8004.2217.1at 2168.513 kb on - strand, within Xcc-8004.2217.1at 2169.149 kb on - strand, within Xcc-8004.2217.1at 2169.149 kb on - strand, within Xcc-8004.2217.1at 2169.151 kb on + strand, within Xcc-8004.2217.1at 2169.151 kb on + strand, within Xcc-8004.2217.1at 2169.151 kb on + strand, within Xcc-8004.2217.1at 2169.152 kb on - strand, within Xcc-8004.2217.1at 2169.152 kb on - strand, within Xcc-8004.2217.1at 2169.152 kb on - strand, within Xcc-8004.2217.1at 2169.220 kb on + strand, within Xcc-8004.2217.1at 2169.221 kb on - strand, within Xcc-8004.2217.1at 2169.615 kb on + strand, within Xcc-8004.2219.1at 2169.615 kb on + strand, within Xcc-8004.2219.1at 2169.616 kb on - strand, within Xcc-8004.2219.1at 2169.616 kb on - strand, within Xcc-8004.2219.1at 2169.616 kb on - strand, within Xcc-8004.2219.1at 2169.616 kb on - strand, within Xcc-8004.2219.1at 2169.687 kb on + strand, within Xcc-8004.2219.1at 2169.687 kb on + strand, within Xcc-8004.2219.1at 2169.688 kb on - strand, within Xcc-8004.2219.1at 2169.688 kb on - strand, within Xcc-8004.2219.1at 2169.688 kb on - strand, within Xcc-8004.2219.1at 2169.688 kb on - strand, within Xcc-8004.2219.1at 2169.813 kb on + strand, within Xcc-8004.2219.1at 2169.836 kb on - strand, within Xcc-8004.2219.1at 2169.836 kb on - strand, within Xcc-8004.2219.1at 2169.836 kb on - strand, within Xcc-8004.2219.1at 2169.836 kb on - strand, within Xcc-8004.2219.1at 2170.231 kb on + strand, within Xcc-8004.2219.1at 2170.276 kb on + strandat 2170.276 kb on + strandat 2170.277 kb on - strandat 2170.309 kb on + strandat 2170.310 kb on - strandat 2170.362 kb on + strandat 2170.375 kb on - strandat 2170.375 kb on - strandat 2170.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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2,167,277 + +0.4
2,167,305 + Xcc-8004.2216.1 0.10 +0.4
2,167,305 + Xcc-8004.2216.1 0.10 -1.0
2,167,306 - Xcc-8004.2216.1 0.11 -0.3
2,167,508 + Xcc-8004.2216.1 0.31 +1.4
2,167,509 - Xcc-8004.2216.1 0.31 +0.3
2,167,509 - Xcc-8004.2216.1 0.31 -0.3
2,167,509 - Xcc-8004.2216.1 0.31 -0.4
2,167,622 + Xcc-8004.2216.1 0.42 +0.3
2,167,649 + Xcc-8004.2216.1 0.45 +0.9
2,167,649 + Xcc-8004.2216.1 0.45 +0.8
2,167,649 + Xcc-8004.2216.1 0.45 -0.9
2,167,649 + Xcc-8004.2216.1 0.45 +0.9
2,167,650 - Xcc-8004.2216.1 0.45 -1.6
2,167,650 - Xcc-8004.2216.1 0.45 -0.9
2,167,718 + Xcc-8004.2216.1 0.52 -0.3
2,167,718 + Xcc-8004.2216.1 0.52 -0.3
2,167,718 + Xcc-8004.2216.1 0.52 -0.4
2,167,718 + Xcc-8004.2216.1 0.52 +1.2
2,167,719 - Xcc-8004.2216.1 0.52 -0.6
2,167,719 - Xcc-8004.2216.1 0.52 +0.9
2,167,719 - Xcc-8004.2216.1 0.52 -2.0
2,167,748 + Xcc-8004.2216.1 0.55 -1.4
2,167,947 - Xcc-8004.2216.1 0.75 -1.2
2,167,947 - Xcc-8004.2216.1 0.75 -2.9
2,168,054 + Xcc-8004.2216.1 0.85 -0.9
2,168,089 + Xcc-8004.2216.1 0.89 +1.6
2,168,089 + Xcc-8004.2216.1 0.89 +0.3
2,168,090 - Xcc-8004.2216.1 0.89 -0.0
2,168,090 - Xcc-8004.2216.1 0.89 +0.6
2,168,090 - Xcc-8004.2216.1 0.89 -0.1
2,168,090 - Xcc-8004.2216.1 0.89 -0.4
2,168,144 + +1.2
2,168,144 + +0.2
2,168,144 + -0.1
2,168,145 - +0.6
2,168,145 - -2.1
2,168,145 - -2.5
2,168,145 - -0.9
2,168,145 - +1.5
2,168,145 - -1.0
2,168,469 - Xcc-8004.2217.1 0.21 -0.9
2,168,512 + Xcc-8004.2217.1 0.24 -0.1
2,168,512 + Xcc-8004.2217.1 0.24 -1.3
2,168,512 + Xcc-8004.2217.1 0.24 -1.9
2,168,513 - Xcc-8004.2217.1 0.24 -2.3
2,168,513 - Xcc-8004.2217.1 0.24 -1.1
2,168,513 - Xcc-8004.2217.1 0.24 +0.4
2,169,149 - Xcc-8004.2217.1 0.75 -0.9
2,169,149 - Xcc-8004.2217.1 0.75 -1.1
2,169,151 + Xcc-8004.2217.1 0.76 -0.3
2,169,151 + Xcc-8004.2217.1 0.76 +1.7
2,169,151 + Xcc-8004.2217.1 0.76 -1.9
2,169,152 - Xcc-8004.2217.1 0.76 -0.6
2,169,152 - Xcc-8004.2217.1 0.76 -0.6
2,169,152 - Xcc-8004.2217.1 0.76 -0.9
2,169,220 + Xcc-8004.2217.1 0.81 +0.0
2,169,221 - Xcc-8004.2217.1 0.81 -1.1
2,169,615 + Xcc-8004.2219.1 0.19 -0.9
2,169,615 + Xcc-8004.2219.1 0.19 -0.1
2,169,616 - Xcc-8004.2219.1 0.19 -1.8
2,169,616 - Xcc-8004.2219.1 0.19 -1.0
2,169,616 - Xcc-8004.2219.1 0.19 +0.0
2,169,616 - Xcc-8004.2219.1 0.19 -1.0
2,169,687 + Xcc-8004.2219.1 0.27 -0.3
2,169,687 + Xcc-8004.2219.1 0.27 -1.1
2,169,688 - Xcc-8004.2219.1 0.27 -0.0
2,169,688 - Xcc-8004.2219.1 0.27 -2.0
2,169,688 - Xcc-8004.2219.1 0.27 -0.5
2,169,688 - Xcc-8004.2219.1 0.27 +1.1
2,169,813 + Xcc-8004.2219.1 0.41 +0.4
2,169,836 - Xcc-8004.2219.1 0.43 -0.2
2,169,836 - Xcc-8004.2219.1 0.43 -0.1
2,169,836 - Xcc-8004.2219.1 0.43 -0.1
2,169,836 - Xcc-8004.2219.1 0.43 +0.7
2,170,231 + Xcc-8004.2219.1 0.87 -0.3
2,170,276 + -0.9
2,170,276 + -0.4
2,170,277 - -0.2
2,170,309 + +0.2
2,170,310 - -1.7
2,170,362 + -1.4
2,170,375 - -0.9
2,170,375 - -0.1
2,170,375 - -0.8

Or see this region's nucleotide sequence