Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2199.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,145,528	+		Xcc-8004.2197.1	0.82	-1.8
2,145,528	+		Xcc-8004.2197.1	0.82	-1.4
2,145,561	+		Xcc-8004.2197.1	0.85	+0.2
2,145,580	-		Xcc-8004.2197.1	0.86	+0.7
2,145,580	-		Xcc-8004.2197.1	0.86	+0.2
2,145,639	+				-0.4
2,145,639	+				-1.6
2,145,639	+				-1.1
2,145,640	-				-1.4
2,145,640	-				-0.7
2,145,640	-				-0.2
2,145,640	-				+0.3
2,145,640	-				+0.6
2,145,640	-				-0.5
2,145,683	-				-0.8
2,145,683	-				+0.7
2,145,687	+				-1.1
2,145,687	+				-1.8
2,145,688	-				-1.1
2,145,688	-				-1.7
2,145,690	+				-1.3
2,145,690	+				-0.1
2,145,690	+				+0.4
2,145,691	-				-0.8
2,145,691	-				+0.3
2,145,758	+				+0.7
2,145,758	+				-0.4
2,145,759	-				+0.2
2,145,837	-				-0.9
2,145,929	-				-0.4
2,145,929	-				+0.2
2,145,991	+				-0.6
2,145,991	+				+1.4
2,145,992	-				-0.4
2,145,992	-				+0.1
2,146,078	+				+0.4
2,146,078	+				+0.8
2,146,078	+				-0.0
2,146,084	+				+0.5
2,146,084	+				-0.2
2,146,084	+				+0.7
2,146,085	-				-0.3
2,146,147	+				+0.2
2,146,148	-				-1.0
2,146,198	+				-1.0
2,146,198	+				-0.8
2,146,227	+				-0.6
2,146,228	-				+0.5
2,146,228	-				-1.1
2,146,228	-				+0.2
2,146,237	+				-0.1
2,146,237	+				-0.0
2,146,238	-				-1.1
2,146,272	+				-0.9
2,146,273	-				+0.6
2,146,420	+		Xcc-8004.2199.1	0.20	-1.0
2,146,420	+		Xcc-8004.2199.1	0.20	-0.9
2,146,491	-		Xcc-8004.2199.1	0.36	-1.7
2,146,791	+				-1.6
2,146,821	+				-2.0
2,146,919	+				-0.9
2,146,919	+				-0.7
2,146,920	-				+0.3
2,146,925	+				-0.4
2,146,925	+				-0.5
2,146,925	+				+1.0
2,146,926	-				+0.6
2,146,926	-				-0.9
2,146,926	-				+0.9
2,147,324	+		Xcc-8004.2200.1	0.35	+0.5
2,147,324	+		Xcc-8004.2200.1	0.35	+1.1
2,147,325	-		Xcc-8004.2200.1	0.35	-0.0
2,147,690	+		Xcc-8004.2200.1	0.63	-0.5
2,147,690	+		Xcc-8004.2200.1	0.63	-0.5
2,147,690	+		Xcc-8004.2200.1	0.63	+0.6
2,147,690	+		Xcc-8004.2200.1	0.63	-0.2
2,147,690	+		Xcc-8004.2200.1	0.63	-0.1
2,147,690	+		Xcc-8004.2200.1	0.63	-0.2
2,147,690	+		Xcc-8004.2200.1	0.63	-0.8
2,147,691	-		Xcc-8004.2200.1	0.63	+0.3
2,147,691	-		Xcc-8004.2200.1	0.63	-0.6
2,147,691	-		Xcc-8004.2200.1	0.63	-0.3
2,147,714	+		Xcc-8004.2200.1	0.65	-0.7
2,147,714	+		Xcc-8004.2200.1	0.65	+1.3
2,147,714	+		Xcc-8004.2200.1	0.65	+1.5
2,147,714	+		Xcc-8004.2200.1	0.65	+0.2
2,147,714	+		Xcc-8004.2200.1	0.65	-1.1
2,147,714	+		Xcc-8004.2200.1	0.65	-0.1
2,147,714	+		Xcc-8004.2200.1	0.65	-0.4
2,147,715	-		Xcc-8004.2200.1	0.65	+0.2
2,147,715	-		Xcc-8004.2200.1	0.65	+0.4
2,147,715	-		Xcc-8004.2200.1	0.65	-0.6
2,147,715	-		Xcc-8004.2200.1	0.65	-0.1
2,147,715	-		Xcc-8004.2200.1	0.65	+0.2