Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2196.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,143,190	+		Xcc-8004.2195.1	0.74	-0.3
2,143,190	+		Xcc-8004.2195.1	0.74	+0.3
2,143,190	+		Xcc-8004.2195.1	0.74	-0.7
2,143,191	-		Xcc-8004.2195.1	0.74	+0.3
2,143,254	+		Xcc-8004.2195.1	0.77	+1.3
2,143,254	+		Xcc-8004.2195.1	0.77	-0.1
2,143,254	+		Xcc-8004.2195.1	0.77	+0.2
2,143,255	-		Xcc-8004.2195.1	0.77	-0.0
2,143,255	-		Xcc-8004.2195.1	0.77	-1.6
2,143,258	+		Xcc-8004.2195.1	0.77	-0.8
2,143,259	-		Xcc-8004.2195.1	0.77	+0.2
2,143,285	+		Xcc-8004.2195.1	0.78	-0.2
2,143,286	-		Xcc-8004.2195.1	0.78	+1.1
2,143,401	+		Xcc-8004.2195.1	0.83	+1.0
2,143,402	-		Xcc-8004.2195.1	0.83	+0.9
2,143,402	-		Xcc-8004.2195.1	0.83	+0.8
2,143,436	+		Xcc-8004.2195.1	0.84	-0.1
2,143,436	+		Xcc-8004.2195.1	0.84	+0.2
2,143,436	+		Xcc-8004.2195.1	0.84	-1.7
2,143,437	-		Xcc-8004.2195.1	0.84	-0.3
2,143,437	-		Xcc-8004.2195.1	0.84	-1.0
2,143,437	-		Xcc-8004.2195.1	0.84	+1.0
2,143,437	-		Xcc-8004.2195.1	0.84	-0.9
2,143,451	+		Xcc-8004.2195.1	0.85	+0.0
2,143,452	-		Xcc-8004.2195.1	0.85	-0.1
2,143,452	-		Xcc-8004.2195.1	0.85	-0.6
2,143,452	-		Xcc-8004.2195.1	0.85	+0.5
2,143,452	-		Xcc-8004.2195.1	0.85	-0.8
2,143,619	+				-1.1
2,143,619	+				+0.7
2,143,620	-				+0.2
2,143,649	+				-0.6
2,143,650	-				-0.1
2,144,061	+				+0.9
2,144,064	+				-2.1
2,144,064	+				-0.5
2,144,064	+				-0.2
2,144,064	+				+0.3
2,144,064	+				+0.3
2,144,065	-				-0.1
2,144,065	-				+0.1
2,144,065	-				-0.8
2,144,065	-				+0.8
2,144,067	+				+0.3
2,144,068	-				+0.2
2,144,068	-				-1.3
2,144,068	-				-0.3
2,144,112	+				+0.5
2,144,113	-				+0.5
2,144,157	+				-0.0
2,144,281	-				-0.7
2,144,281	-				-1.2
2,144,458	-				+0.6
2,144,571	+				+1.3
2,144,577	+				+0.0
2,144,577	+				-0.6
2,144,578	-				+1.7
2,144,805	+		Xcc-8004.2197.1	0.26	+0.4
2,144,805	+		Xcc-8004.2197.1	0.26	-1.5
2,144,806	-		Xcc-8004.2197.1	0.26	-0.2
2,144,806	-		Xcc-8004.2197.1	0.26	+0.5