Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2155.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
2,082,638	+		Xcc-8004.2153.1	0.63	+0.1
2,082,638	+		Xcc-8004.2153.1	0.63	+0.4
2,082,638	+		Xcc-8004.2153.1	0.63	-0.3
2,082,638	+		Xcc-8004.2153.1	0.63	+0.4
2,082,638	+		Xcc-8004.2153.1	0.63	-0.4
2,082,638	+		Xcc-8004.2153.1	0.63	-0.8
2,082,638	+		Xcc-8004.2153.1	0.63	+0.9
2,082,638	+		Xcc-8004.2153.1	0.63	-1.9
2,082,639	-		Xcc-8004.2153.1	0.64	-1.2
2,082,639	-		Xcc-8004.2153.1	0.64	-0.3
2,082,782	-		Xcc-8004.2153.1	0.81	-1.1
2,082,816	-		Xcc-8004.2153.1	0.86	+0.3
2,082,865	+				-0.4
2,082,866	-				+0.8
2,082,891	+				-0.5
2,082,891	+				-1.4
2,082,892	-				-0.1
2,082,892	-				+0.3
2,082,892	-				-0.1
2,082,892	-				-1.5
2,082,926	+				-1.2
2,082,926	+				-0.1
2,082,926	+				+0.5
2,083,441	+				-1.5
2,083,441	+				+0.4
2,083,441	+				-1.7
2,083,442	-				-0.9
2,083,442	-				-1.9
2,083,634	+		Xcc-8004.2155.1	0.30	+0.1
2,083,634	+		Xcc-8004.2155.1	0.30	-2.5
2,083,634	+		Xcc-8004.2155.1	0.30	-1.3
2,083,634	+		Xcc-8004.2155.1	0.30	-0.3
2,083,678	+		Xcc-8004.2155.1	0.39	-1.3
2,083,679	-		Xcc-8004.2155.1	0.39	-0.3
2,083,691	+		Xcc-8004.2155.1	0.42	-0.3
2,083,691	+		Xcc-8004.2155.1	0.42	-0.4
2,083,691	+		Xcc-8004.2155.1	0.42	+0.3
2,083,692	-		Xcc-8004.2155.1	0.42	-0.3
2,083,692	-		Xcc-8004.2155.1	0.42	-1.6
2,083,692	-		Xcc-8004.2155.1	0.42	-0.4
2,083,692	-		Xcc-8004.2155.1	0.42	-0.1
2,083,694	+		Xcc-8004.2155.1	0.42	-0.0
2,083,694	+		Xcc-8004.2155.1	0.42	-1.4
2,083,694	+		Xcc-8004.2155.1	0.42	+0.0
2,083,694	+		Xcc-8004.2155.1	0.42	-2.3
2,083,694	+		Xcc-8004.2155.1	0.42	-0.3
2,083,695	-		Xcc-8004.2155.1	0.42	-1.3
2,083,695	-		Xcc-8004.2155.1	0.42	-1.0
2,083,695	-		Xcc-8004.2155.1	0.42	+1.1
2,083,695	-		Xcc-8004.2155.1	0.42	-2.4
2,083,733	+		Xcc-8004.2155.1	0.50	-0.2
2,083,733	+		Xcc-8004.2155.1	0.50	-1.9
2,083,958	+				-0.4
2,083,958	+				-0.3
2,083,958	+				-0.6
2,083,958	+				-0.2
2,083,958	+				-0.4
2,083,959	-				-0.6
2,083,959	-				+0.7
2,083,959	-				+2.0
2,083,979	+				+0.5
2,083,979	+				-0.8
2,083,979	+				-0.8
2,083,979	+				+1.3
2,083,979	+				+1.4
2,083,979	+				-0.0
2,083,979	+				-0.3
2,083,979	+				+0.7
2,083,979	+				-0.3
2,083,979	+				+0.0
2,083,979	+				-0.2
2,083,979	+				-0.4
2,083,980	-				-0.3
2,083,980	-				+0.1
2,083,980	-				-0.1
2,083,980	-				+1.0
2,083,980	-				+0.3
2,084,441	+				-1.9
2,084,441	+				-0.2
2,084,442	-				-1.1
2,084,442	-				-0.4
2,084,442	-				+0.1
2,084,810	-		Xcc-8004.2158.1	0.19	-1.3