Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2105.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2104.1 and Xcc-8004.2105.1 are separated by 37 nucleotidesXcc-8004.2105.1 and Xcc-8004.2106.1 are separated by 76 nucleotides Xcc-8004.2104.1: Xcc-8004.2104.1 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 2,019,371 to 2,021,164 Xcc-8004.2104.1 Xcc-8004.2105.1: Xcc-8004.2105.1 - FIG01210123: hypothetical protein, at 2,021,202 to 2,021,681 Xcc-8004.2105.1 Xcc-8004.2106.1: Xcc-8004.2106.1 - Outer membrane lipoprotein Blc, at 2,021,758 to 2,022,294 Xcc-8004.2106.1 Position (kb) 2021 2022Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2020.212 kb on + strand, within Xcc-8004.2104.1at 2020.212 kb on + strand, within Xcc-8004.2104.1at 2020.213 kb on - strand, within Xcc-8004.2104.1at 2020.213 kb on - strand, within Xcc-8004.2104.1at 2020.213 kb on - strand, within Xcc-8004.2104.1at 2020.230 kb on + strand, within Xcc-8004.2104.1at 2020.282 kb on + strand, within Xcc-8004.2104.1at 2020.283 kb on - strand, within Xcc-8004.2104.1at 2020.294 kb on + strand, within Xcc-8004.2104.1at 2020.294 kb on + strand, within Xcc-8004.2104.1at 2020.294 kb on + strand, within Xcc-8004.2104.1at 2020.294 kb on + strand, within Xcc-8004.2104.1at 2020.295 kb on - strand, within Xcc-8004.2104.1at 2020.335 kb on + strand, within Xcc-8004.2104.1at 2020.335 kb on + strand, within Xcc-8004.2104.1at 2020.335 kb on + strand, within Xcc-8004.2104.1at 2020.335 kb on + strand, within Xcc-8004.2104.1at 2020.336 kb on - strand, within Xcc-8004.2104.1at 2020.336 kb on - strand, within Xcc-8004.2104.1at 2020.336 kb on - strand, within Xcc-8004.2104.1at 2020.596 kb on + strand, within Xcc-8004.2104.1at 2020.596 kb on + strand, within Xcc-8004.2104.1at 2020.596 kb on + strand, within Xcc-8004.2104.1at 2020.596 kb on + strand, within Xcc-8004.2104.1at 2020.596 kb on + strand, within Xcc-8004.2104.1at 2020.596 kb on + strand, within Xcc-8004.2104.1at 2020.596 kb on + strand, within Xcc-8004.2104.1at 2020.596 kb on + strand, within Xcc-8004.2104.1at 2020.596 kb on + strand, within Xcc-8004.2104.1at 2020.596 kb on + strand, within Xcc-8004.2104.1at 2020.597 kb on - strand, within Xcc-8004.2104.1at 2020.597 kb on - strand, within Xcc-8004.2104.1at 2020.597 kb on - strand, within Xcc-8004.2104.1at 2020.597 kb on - strand, within Xcc-8004.2104.1at 2020.597 kb on - strand, within Xcc-8004.2104.1at 2020.597 kb on - strand, within Xcc-8004.2104.1at 2020.597 kb on - strand, within Xcc-8004.2104.1at 2020.597 kb on - strand, within Xcc-8004.2104.1at 2020.914 kb on + strand, within Xcc-8004.2104.1at 2020.914 kb on + strand, within Xcc-8004.2104.1at 2020.914 kb on + strand, within Xcc-8004.2104.1at 2020.914 kb on + strand, within Xcc-8004.2104.1at 2020.915 kb on - strand, within Xcc-8004.2104.1at 2020.915 kb on - strand, within Xcc-8004.2104.1at 2020.915 kb on - strand, within Xcc-8004.2104.1at 2020.915 kb on - strand, within Xcc-8004.2104.1at 2020.915 kb on - strand, within Xcc-8004.2104.1at 2021.074 kb on + strandat 2021.074 kb on + strandat 2021.075 kb on - strandat 2021.075 kb on - strandat 2021.075 kb on - strandat 2021.077 kb on - strandat 2021.118 kb on + strandat 2021.119 kb on - strandat 2021.119 kb on - strandat 2021.119 kb on - strandat 2021.154 kb on + strandat 2021.154 kb on + strandat 2021.154 kb on + strandat 2021.154 kb on + strandat 2021.154 kb on + strandat 2021.154 kb on + strandat 2021.154 kb on + strandat 2021.154 kb on + strandat 2021.155 kb on - strandat 2021.155 kb on - strandat 2021.155 kb on - strandat 2021.155 kb on - strandat 2021.155 kb on - strandat 2021.318 kb on - strand, within Xcc-8004.2105.1at 2021.318 kb on - strand, within Xcc-8004.2105.1at 2021.515 kb on + strand, within Xcc-8004.2105.1at 2021.515 kb on + strand, within Xcc-8004.2105.1at 2021.515 kb on + strand, within Xcc-8004.2105.1at 2021.515 kb on + strand, within Xcc-8004.2105.1at 2021.516 kb on - strand, within Xcc-8004.2105.1at 2021.516 kb on - strand, within Xcc-8004.2105.1at 2021.516 kb on - strand, within Xcc-8004.2105.1at 2021.516 kb on - strand, within Xcc-8004.2105.1at 2021.516 kb on - strand, within Xcc-8004.2105.1at 2021.516 kb on - strand, within Xcc-8004.2105.1at 2021.516 kb on - strand, within Xcc-8004.2105.1at 2021.516 kb on - strand, within Xcc-8004.2105.1at 2021.516 kb on - strand, within Xcc-8004.2105.1at 2021.516 kb on - strand, within Xcc-8004.2105.1at 2021.516 kb on - strand, within Xcc-8004.2105.1at 2021.516 kb on - strand, within Xcc-8004.2105.1at 2021.516 kb on - strand, within Xcc-8004.2105.1at 2021.720 kb on + strandat 2021.720 kb on + strandat 2021.720 kb on + strandat 2021.720 kb on + strandat 2021.721 kb on - strandat 2021.721 kb on - strandat 2021.721 kb on - strandat 2021.721 kb on - strandat 2021.723 kb on + strandat 2021.723 kb on + strandat 2021.723 kb on + strandat 2021.723 kb on + strandat 2021.724 kb on - strandat 2021.724 kb on - strandat 2021.724 kb on - strandat 2021.724 kb on - strandat 2021.724 kb on - strandat 2021.724 kb on - strandat 2021.724 kb on - strandat 2021.724 kb on - strandat 2021.730 kb on + strandat 2021.730 kb on + strandat 2021.731 kb on - strandat 2021.798 kb on + strandat 2021.799 kb on - strandat 2021.879 kb on + strand, within Xcc-8004.2106.1at 2021.879 kb on + strand, within Xcc-8004.2106.1at 2021.879 kb on + strand, within Xcc-8004.2106.1at 2021.879 kb on + strand, within Xcc-8004.2106.1at 2021.879 kb on + strand, within Xcc-8004.2106.1at 2021.880 kb on - strand, within Xcc-8004.2106.1at 2021.880 kb on - strand, within Xcc-8004.2106.1at 2021.880 kb on - strand, within Xcc-8004.2106.1at 2021.880 kb on - strand, within Xcc-8004.2106.1at 2021.880 kb on - strand, within Xcc-8004.2106.1at 2021.880 kb on - strand, within Xcc-8004.2106.1at 2021.916 kb on - strand, within Xcc-8004.2106.1at 2021.916 kb on - strand, within Xcc-8004.2106.1at 2021.942 kb on + strand, within Xcc-8004.2106.1at 2021.942 kb on + strand, within Xcc-8004.2106.1at 2021.942 kb on + strand, within Xcc-8004.2106.1at 2021.942 kb on + strand, within Xcc-8004.2106.1at 2021.942 kb on + strand, within Xcc-8004.2106.1at 2021.942 kb on + strand, within Xcc-8004.2106.1at 2021.942 kb on + strand, within Xcc-8004.2106.1at 2021.943 kb on - strand, within Xcc-8004.2106.1at 2021.943 kb on - strand, within Xcc-8004.2106.1at 2021.943 kb on - strand, within Xcc-8004.2106.1at 2022.113 kb on + strand, within Xcc-8004.2106.1at 2022.113 kb on + strand, within Xcc-8004.2106.1at 2022.113 kb on + strand, within Xcc-8004.2106.1at 2022.113 kb on + strand, within Xcc-8004.2106.1at 2022.113 kb on + strand, within Xcc-8004.2106.1at 2022.113 kb on + strand, within Xcc-8004.2106.1at 2022.113 kb on + strand, within Xcc-8004.2106.1at 2022.113 kb on + strand, within Xcc-8004.2106.1at 2022.113 kb on + strand, within Xcc-8004.2106.1at 2022.113 kb on + strand, within Xcc-8004.2106.1at 2022.113 kb on + strand, within Xcc-8004.2106.1at 2022.114 kb on - strand, within Xcc-8004.2106.1at 2022.114 kb on - strand, within Xcc-8004.2106.1at 2022.114 kb on - strand, within Xcc-8004.2106.1at 2022.114 kb on - strand, within Xcc-8004.2106.1at 2022.114 kb on - strand, within Xcc-8004.2106.1at 2022.114 kb on - strand, within Xcc-8004.2106.1at 2022.114 kb on - strand, within Xcc-8004.2106.1at 2022.114 kb on - strand, within Xcc-8004.2106.1at 2022.114 kb on - strand, within Xcc-8004.2106.1at 2022.126 kb on + strand, within Xcc-8004.2106.1at 2022.126 kb on + strand, within Xcc-8004.2106.1at 2022.127 kb on - strand, within Xcc-8004.2106.1at 2022.160 kb on + strand, within Xcc-8004.2106.1at 2022.160 kb on + strand, within Xcc-8004.2106.1at 2022.160 kb on + strand, within Xcc-8004.2106.1at 2022.160 kb on + strand, within Xcc-8004.2106.1at 2022.160 kb on + strand, within Xcc-8004.2106.1at 2022.161 kb on - strand, within Xcc-8004.2106.1at 2022.161 kb on - strand, within Xcc-8004.2106.1at 2022.161 kb on - strand, within Xcc-8004.2106.1at 2022.161 kb on - strand, within Xcc-8004.2106.1at 2022.161 kb on - strand, within Xcc-8004.2106.1at 2022.161 kb on - strand, within Xcc-8004.2106.1at 2022.192 kb on - strand, within Xcc-8004.2106.1at 2022.192 kb on - strand, within Xcc-8004.2106.1at 2022.201 kb on + strand, within Xcc-8004.2106.1at 2022.201 kb on + strand, within Xcc-8004.2106.1at 2022.201 kb on + strand, within Xcc-8004.2106.1at 2022.202 kb on - strand, within Xcc-8004.2106.1at 2022.202 kb on - strand, within Xcc-8004.2106.1at 2022.202 kb on - strand, within Xcc-8004.2106.1at 2022.322 kb on + strandat 2022.322 kb on + strandat 2022.323 kb on - strandat 2022.323 kb on - strandat 2022.554 kb on + strandat 2022.555 kb on - strandat 2022.555 kb on - strandat 2022.586 kb on + strandat 2022.587 kb on - strandat 2022.587 kb on - strandat 2022.618 kb on + strandat 2022.619 kb on - strandat 2022.619 kb on - strandat 2022.619 kb on - strandat 2022.619 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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2,020,212 + Xcc-8004.2104.1 0.47 +0.7
2,020,212 + Xcc-8004.2104.1 0.47 -0.5
2,020,213 - Xcc-8004.2104.1 0.47 -0.9
2,020,213 - Xcc-8004.2104.1 0.47 -0.4
2,020,213 - Xcc-8004.2104.1 0.47 +1.0
2,020,230 + Xcc-8004.2104.1 0.48 -0.5
2,020,282 + Xcc-8004.2104.1 0.51 +0.2
2,020,283 - Xcc-8004.2104.1 0.51 +0.4
2,020,294 + Xcc-8004.2104.1 0.51 -0.2
2,020,294 + Xcc-8004.2104.1 0.51 +0.2
2,020,294 + Xcc-8004.2104.1 0.51 -0.1
2,020,294 + Xcc-8004.2104.1 0.51 +0.3
2,020,295 - Xcc-8004.2104.1 0.52 +0.4
2,020,335 + Xcc-8004.2104.1 0.54 +0.4
2,020,335 + Xcc-8004.2104.1 0.54 -0.2
2,020,335 + Xcc-8004.2104.1 0.54 -0.4
2,020,335 + Xcc-8004.2104.1 0.54 +0.5
2,020,336 - Xcc-8004.2104.1 0.54 -0.4
2,020,336 - Xcc-8004.2104.1 0.54 +0.2
2,020,336 - Xcc-8004.2104.1 0.54 -1.2
2,020,596 + Xcc-8004.2104.1 0.68 +1.0
2,020,596 + Xcc-8004.2104.1 0.68 -0.4
2,020,596 + Xcc-8004.2104.1 0.68 +0.6
2,020,596 + Xcc-8004.2104.1 0.68 -0.7
2,020,596 + Xcc-8004.2104.1 0.68 +0.1
2,020,596 + Xcc-8004.2104.1 0.68 -0.1
2,020,596 + Xcc-8004.2104.1 0.68 +0.1
2,020,596 + Xcc-8004.2104.1 0.68 -0.6
2,020,596 + Xcc-8004.2104.1 0.68 +0.9
2,020,596 + Xcc-8004.2104.1 0.68 +0.4
2,020,597 - Xcc-8004.2104.1 0.68 +0.6
2,020,597 - Xcc-8004.2104.1 0.68 -0.3
2,020,597 - Xcc-8004.2104.1 0.68 -1.0
2,020,597 - Xcc-8004.2104.1 0.68 +0.5
2,020,597 - Xcc-8004.2104.1 0.68 -1.2
2,020,597 - Xcc-8004.2104.1 0.68 +1.4
2,020,597 - Xcc-8004.2104.1 0.68 +0.7
2,020,597 - Xcc-8004.2104.1 0.68 -0.3
2,020,914 + Xcc-8004.2104.1 0.86 +1.1
2,020,914 + Xcc-8004.2104.1 0.86 -0.4
2,020,914 + Xcc-8004.2104.1 0.86 +0.9
2,020,914 + Xcc-8004.2104.1 0.86 -1.0
2,020,915 - Xcc-8004.2104.1 0.86 -0.9
2,020,915 - Xcc-8004.2104.1 0.86 -0.5
2,020,915 - Xcc-8004.2104.1 0.86 -0.1
2,020,915 - Xcc-8004.2104.1 0.86 +1.4
2,020,915 - Xcc-8004.2104.1 0.86 -2.2
2,021,074 + -0.2
2,021,074 + -1.2
2,021,075 - -0.6
2,021,075 - -1.3
2,021,075 - -1.6
2,021,077 - -0.5
2,021,118 + -0.2
2,021,119 - -0.4
2,021,119 - +0.2
2,021,119 - +0.7
2,021,154 + -0.6
2,021,154 + +0.1
2,021,154 + +0.3
2,021,154 + -0.0
2,021,154 + -0.3
2,021,154 + -1.6
2,021,154 + -0.3
2,021,154 + -0.9
2,021,155 - -1.4
2,021,155 - -0.4
2,021,155 - +1.0
2,021,155 - +0.7
2,021,155 - +1.4
2,021,318 - Xcc-8004.2105.1 0.24 -2.1
2,021,318 - Xcc-8004.2105.1 0.24 -1.3
2,021,515 + Xcc-8004.2105.1 0.65 -0.2
2,021,515 + Xcc-8004.2105.1 0.65 -1.6
2,021,515 + Xcc-8004.2105.1 0.65 -0.3
2,021,515 + Xcc-8004.2105.1 0.65 -3.0
2,021,516 - Xcc-8004.2105.1 0.65 -2.3
2,021,516 - Xcc-8004.2105.1 0.65 -1.4
2,021,516 - Xcc-8004.2105.1 0.65 -2.7
2,021,516 - Xcc-8004.2105.1 0.65 -0.7
2,021,516 - Xcc-8004.2105.1 0.65 -2.4
2,021,516 - Xcc-8004.2105.1 0.65 -0.8
2,021,516 - Xcc-8004.2105.1 0.65 -1.4
2,021,516 - Xcc-8004.2105.1 0.65 -1.9
2,021,516 - Xcc-8004.2105.1 0.65 -2.5
2,021,516 - Xcc-8004.2105.1 0.65 -2.0
2,021,516 - Xcc-8004.2105.1 0.65 -1.3
2,021,516 - Xcc-8004.2105.1 0.65 -2.2
2,021,516 - Xcc-8004.2105.1 0.65 -1.4
2,021,720 + +0.6
2,021,720 + +1.7
2,021,720 + +0.5
2,021,720 + +0.6
2,021,721 - -0.6
2,021,721 - +0.7
2,021,721 - -0.8
2,021,721 - +0.6
2,021,723 + -0.2
2,021,723 + +0.7
2,021,723 + -0.0
2,021,723 + -0.1
2,021,724 - +0.2
2,021,724 - -1.3
2,021,724 - -1.9
2,021,724 - +0.2
2,021,724 - +0.7
2,021,724 - +0.5
2,021,724 - +1.0
2,021,724 - +1.9
2,021,730 + -1.3
2,021,730 + +0.2
2,021,731 - -0.2
2,021,798 + +0.1
2,021,799 - +2.2
2,021,879 + Xcc-8004.2106.1 0.23 -0.9
2,021,879 + Xcc-8004.2106.1 0.23 -0.7
2,021,879 + Xcc-8004.2106.1 0.23 -0.1
2,021,879 + Xcc-8004.2106.1 0.23 -1.2
2,021,879 + Xcc-8004.2106.1 0.23 +0.0
2,021,880 - Xcc-8004.2106.1 0.23 -0.6
2,021,880 - Xcc-8004.2106.1 0.23 -1.4
2,021,880 - Xcc-8004.2106.1 0.23 -0.4
2,021,880 - Xcc-8004.2106.1 0.23 -0.9
2,021,880 - Xcc-8004.2106.1 0.23 -0.4
2,021,880 - Xcc-8004.2106.1 0.23 -0.4
2,021,916 - Xcc-8004.2106.1 0.29 +1.5
2,021,916 - Xcc-8004.2106.1 0.29 -1.2
2,021,942 + Xcc-8004.2106.1 0.34 +1.0
2,021,942 + Xcc-8004.2106.1 0.34 -1.5
2,021,942 + Xcc-8004.2106.1 0.34 -1.1
2,021,942 + Xcc-8004.2106.1 0.34 -1.7
2,021,942 + Xcc-8004.2106.1 0.34 -0.1
2,021,942 + Xcc-8004.2106.1 0.34 +0.1
2,021,942 + Xcc-8004.2106.1 0.34 -0.8
2,021,943 - Xcc-8004.2106.1 0.34 -1.6
2,021,943 - Xcc-8004.2106.1 0.34 -1.3
2,021,943 - Xcc-8004.2106.1 0.34 +0.7
2,022,113 + Xcc-8004.2106.1 0.66 +1.7
2,022,113 + Xcc-8004.2106.1 0.66 -0.3
2,022,113 + Xcc-8004.2106.1 0.66 +0.2
2,022,113 + Xcc-8004.2106.1 0.66 -0.3
2,022,113 + Xcc-8004.2106.1 0.66 -1.0
2,022,113 + Xcc-8004.2106.1 0.66 -1.0
2,022,113 + Xcc-8004.2106.1 0.66 -0.9
2,022,113 + Xcc-8004.2106.1 0.66 +0.1
2,022,113 + Xcc-8004.2106.1 0.66 -0.7
2,022,113 + Xcc-8004.2106.1 0.66 +0.3
2,022,113 + Xcc-8004.2106.1 0.66 +0.6
2,022,114 - Xcc-8004.2106.1 0.66 -0.9
2,022,114 - Xcc-8004.2106.1 0.66 +0.1
2,022,114 - Xcc-8004.2106.1 0.66 -0.9
2,022,114 - Xcc-8004.2106.1 0.66 -1.7
2,022,114 - Xcc-8004.2106.1 0.66 +0.5
2,022,114 - Xcc-8004.2106.1 0.66 +0.7
2,022,114 - Xcc-8004.2106.1 0.66 -1.7
2,022,114 - Xcc-8004.2106.1 0.66 +0.7
2,022,114 - Xcc-8004.2106.1 0.66 -0.8
2,022,126 + Xcc-8004.2106.1 0.69 -1.9
2,022,126 + Xcc-8004.2106.1 0.69 -0.3
2,022,127 - Xcc-8004.2106.1 0.69 -1.6
2,022,160 + Xcc-8004.2106.1 0.75 +1.1
2,022,160 + Xcc-8004.2106.1 0.75 -1.1
2,022,160 + Xcc-8004.2106.1 0.75 -0.5
2,022,160 + Xcc-8004.2106.1 0.75 +1.2
2,022,160 + Xcc-8004.2106.1 0.75 -1.1
2,022,161 - Xcc-8004.2106.1 0.75 +0.1
2,022,161 - Xcc-8004.2106.1 0.75 -0.1
2,022,161 - Xcc-8004.2106.1 0.75 -1.8
2,022,161 - Xcc-8004.2106.1 0.75 -1.6
2,022,161 - Xcc-8004.2106.1 0.75 -0.4
2,022,161 - Xcc-8004.2106.1 0.75 -0.2
2,022,192 - Xcc-8004.2106.1 0.81 +0.6
2,022,192 - Xcc-8004.2106.1 0.81 -1.1
2,022,201 + Xcc-8004.2106.1 0.82 -0.1
2,022,201 + Xcc-8004.2106.1 0.82 +0.3
2,022,201 + Xcc-8004.2106.1 0.82 +1.4
2,022,202 - Xcc-8004.2106.1 0.83 +1.2
2,022,202 - Xcc-8004.2106.1 0.83 -0.5
2,022,202 - Xcc-8004.2106.1 0.83 -0.2
2,022,322 + +0.0
2,022,322 + +0.1
2,022,323 - +0.7
2,022,323 - -0.2
2,022,554 + +0.9
2,022,555 - +0.8
2,022,555 - +0.8
2,022,586 + +0.9
2,022,587 - -0.5
2,022,587 - -0.5
2,022,618 + -0.7
2,022,619 - -0.6
2,022,619 - +0.1
2,022,619 - -1.9
2,022,619 - -0.3

Or see this region's nucleotide sequence