Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.204.1 and Xcc-8004.205.1 are separated by 140 nucleotides Xcc-8004.205.1 and Xcc-8004.206.1 are separated by 889 nucleotides
Xcc-8004.204.1: Xcc-8004.204.1 - Beta-xylosidase (EC 3.2.1.37), at 196,883 to 198,463
Xcc-8004.204.1
Xcc-8004.205.1: Xcc-8004.205.1 - Ribose operon repressor, at 198,604 to 199,662
Xcc-8004.205.1
Xcc-8004.206.1: Xcc-8004.206.1 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17), at 200,552 to 201,406
Xcc-8004.206.1
Position (kb) 198
199
200 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.756 kb on + strand, within Xcc-8004.204.1 at 197.757 kb on - strand, within Xcc-8004.204.1 at 197.757 kb on - strand, within Xcc-8004.204.1 at 197.765 kb on + strand, within Xcc-8004.204.1 at 197.765 kb on + strand, within Xcc-8004.204.1 at 198.083 kb on + strand, within Xcc-8004.204.1 at 198.083 kb on + strand, within Xcc-8004.204.1 at 198.143 kb on + strand, within Xcc-8004.204.1 at 198.143 kb on + strand, within Xcc-8004.204.1 at 198.143 kb on + strand, within Xcc-8004.204.1 at 198.144 kb on - strand, within Xcc-8004.204.1 at 198.144 kb on - strand, within Xcc-8004.204.1 at 198.144 kb on - strand, within Xcc-8004.204.1 at 198.144 kb on - strand, within Xcc-8004.204.1 at 198.158 kb on + strand, within Xcc-8004.204.1 at 198.159 kb on - strand, within Xcc-8004.204.1 at 198.159 kb on - strand, within Xcc-8004.204.1 at 198.159 kb on - strand, within Xcc-8004.204.1 at 198.329 kb on + strand at 198.330 kb on - strand at 198.330 kb on - strand at 198.404 kb on + strand at 198.404 kb on + strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.405 kb on - strand at 198.603 kb on + strand at 198.603 kb on + strand at 198.603 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.659 kb on + strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.660 kb on - strand at 198.853 kb on + strand, within Xcc-8004.205.1 at 198.853 kb on + strand, within Xcc-8004.205.1 at 198.853 kb on + strand, within Xcc-8004.205.1 at 198.853 kb on + strand, within Xcc-8004.205.1 at 198.854 kb on - strand, within Xcc-8004.205.1 at 198.874 kb on + strand, within Xcc-8004.205.1 at 198.874 kb on + strand, within Xcc-8004.205.1 at 198.874 kb on + strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.875 kb on - strand, within Xcc-8004.205.1 at 198.893 kb on - strand, within Xcc-8004.205.1 at 198.893 kb on - strand, within Xcc-8004.205.1 at 198.893 kb on - strand, within Xcc-8004.205.1 at 198.967 kb on + strand, within Xcc-8004.205.1 at 198.967 kb on + strand, within Xcc-8004.205.1 at 198.968 kb on - strand, within Xcc-8004.205.1 at 198.968 kb on - strand, within Xcc-8004.205.1 at 198.968 kb on - strand, within Xcc-8004.205.1 at 198.968 kb on - strand, within Xcc-8004.205.1 at 198.969 kb on + strand, within Xcc-8004.205.1 at 198.969 kb on + strand, within Xcc-8004.205.1 at 198.969 kb on + strand, within Xcc-8004.205.1 at 199.171 kb on + strand, within Xcc-8004.205.1 at 199.172 kb on - strand, within Xcc-8004.205.1 at 199.172 kb on - strand, within Xcc-8004.205.1 at 199.172 kb on - strand, within Xcc-8004.205.1 at 199.172 kb on - strand, within Xcc-8004.205.1 at 199.172 kb on - strand, within Xcc-8004.205.1 at 199.226 kb on - strand, within Xcc-8004.205.1 at 199.318 kb on + strand, within Xcc-8004.205.1 at 199.319 kb on - strand, within Xcc-8004.205.1 at 199.319 kb on - strand, within Xcc-8004.205.1 at 199.416 kb on + strand, within Xcc-8004.205.1 at 199.416 kb on + strand, within Xcc-8004.205.1 at 199.417 kb on - strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.420 kb on + strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.421 kb on - strand, within Xcc-8004.205.1 at 199.477 kb on + strand, within Xcc-8004.205.1 at 199.478 kb on - strand, within Xcc-8004.205.1 at 199.478 kb on - strand, within Xcc-8004.205.1 at 199.598 kb on + strand at 199.599 kb on - strand at 199.668 kb on + strand at 199.668 kb on + strand at 199.668 kb on + strand at 199.668 kb on + strand at 199.668 kb on + strand at 199.668 kb on + strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.669 kb on - strand at 199.792 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.834 kb on + strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.835 kb on - strand at 199.839 kb on - strand at 199.839 kb on - strand at 199.839 kb on - strand at 199.849 kb on + strand at 199.849 kb on + strand at 199.849 kb on + strand at 199.849 kb on + strand at 199.849 kb on + strand at 199.849 kb on + strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.850 kb on - strand at 199.887 kb on + strand at 199.887 kb on + strand at 199.887 kb on + strand at 199.887 kb on + strand at 199.887 kb on + strand at 199.887 kb on + strand at 199.887 kb on + strand at 199.902 kb on + strand at 199.903 kb on - strand at 199.903 kb on - strand at 200.036 kb on + strand at 200.037 kb on - strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.047 kb on + strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.048 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.087 kb on - strand at 200.147 kb on + strand at 200.147 kb on + strand at 200.147 kb on + strand at 200.147 kb on + strand at 200.147 kb on + strand at 200.148 kb on - strand at 200.148 kb on - strand at 200.148 kb on - strand at 200.186 kb on + strand at 200.186 kb on + strand at 200.186 kb on + strand at 200.187 kb on - strand at 200.267 kb on + strand at 200.267 kb on + strand at 200.268 kb on - strand at 200.268 kb on - strand at 200.314 kb on - strand at 200.314 kb on - strand at 200.314 kb on - strand at 200.314 kb on - strand at 200.314 kb on - strand at 200.314 kb on - strand at 200.498 kb on + strand at 200.499 kb on - strand at 200.561 kb on + strand at 200.561 kb on + strand at 200.561 kb on + strand at 200.561 kb on + strand at 200.562 kb on - strand at 200.576 kb on + strand at 200.576 kb on + strand at 200.577 kb on - strand at 200.577 kb on - strand at 200.633 kb on + strand at 200.633 kb on + strand at 200.633 kb on + strand at 200.633 kb on + strand at 200.633 kb on + strand at 200.633 kb on + strand at 200.633 kb on + strand at 200.634 kb on - strand at 200.634 kb on - strand at 200.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 197,756 + Xcc-8004.204.1 0.55 +0.6 197,756 + Xcc-8004.204.1 0.55 -0.4 197,756 + Xcc-8004.204.1 0.55 -0.7 197,756 + Xcc-8004.204.1 0.55 -1.9 197,756 + Xcc-8004.204.1 0.55 +0.4 197,756 + Xcc-8004.204.1 0.55 -1.2 197,756 + Xcc-8004.204.1 0.55 -0.8 197,756 + Xcc-8004.204.1 0.55 -1.3 197,756 + Xcc-8004.204.1 0.55 +0.3 197,757 - Xcc-8004.204.1 0.55 +0.5 197,757 - Xcc-8004.204.1 0.55 -0.0 197,765 + Xcc-8004.204.1 0.56 +0.3 197,765 + Xcc-8004.204.1 0.56 -0.3 198,083 + Xcc-8004.204.1 0.76 +0.7 198,083 + Xcc-8004.204.1 0.76 +0.3 198,143 + Xcc-8004.204.1 0.80 -0.4 198,143 + Xcc-8004.204.1 0.80 -0.1 198,143 + Xcc-8004.204.1 0.80 -1.0 198,144 - Xcc-8004.204.1 0.80 +0.6 198,144 - Xcc-8004.204.1 0.80 -1.2 198,144 - Xcc-8004.204.1 0.80 +0.0 198,144 - Xcc-8004.204.1 0.80 -1.4 198,158 + Xcc-8004.204.1 0.81 -1.3 198,159 - Xcc-8004.204.1 0.81 -0.2 198,159 - Xcc-8004.204.1 0.81 +1.0 198,159 - Xcc-8004.204.1 0.81 -0.1 198,329 + -0.3 198,330 - -0.2 198,330 - +0.2 198,404 + -1.9 198,404 + -2.4 198,405 - +0.1 198,405 - -0.4 198,405 - +0.7 198,405 - -0.0 198,405 - +0.5 198,405 - -0.4 198,405 - +0.5 198,405 - -0.8 198,603 + -1.0 198,603 + -1.8 198,603 + +0.7 198,659 + -0.3 198,659 + +1.0 198,659 + -1.1 198,659 + -2.5 198,659 + -1.3 198,659 + -1.2 198,659 + -1.4 198,659 + -0.7 198,659 + -2.3 198,660 - -2.2 198,660 - -1.4 198,660 - -0.1 198,660 - -2.2 198,660 - -0.5 198,660 - -3.1 198,660 - -0.4 198,660 - +0.8 198,853 + Xcc-8004.205.1 0.24 -0.6 198,853 + Xcc-8004.205.1 0.24 -2.0 198,853 + Xcc-8004.205.1 0.24 -0.6 198,853 + Xcc-8004.205.1 0.24 -1.2 198,854 - Xcc-8004.205.1 0.24 -2.5 198,874 + Xcc-8004.205.1 0.25 -2.8 198,874 + Xcc-8004.205.1 0.25 -2.5 198,874 + Xcc-8004.205.1 0.25 -2.6 198,875 - Xcc-8004.205.1 0.26 -2.0 198,875 - Xcc-8004.205.1 0.26 -0.7 198,875 - Xcc-8004.205.1 0.26 -1.5 198,875 - Xcc-8004.205.1 0.26 +0.7 198,875 - Xcc-8004.205.1 0.26 -1.2 198,875 - Xcc-8004.205.1 0.26 -0.9 198,875 - Xcc-8004.205.1 0.26 -1.4 198,875 - Xcc-8004.205.1 0.26 -0.1 198,893 - Xcc-8004.205.1 0.27 +1.3 198,893 - Xcc-8004.205.1 0.27 -0.4 198,893 - Xcc-8004.205.1 0.27 -1.5 198,967 + Xcc-8004.205.1 0.34 -0.2 198,967 + Xcc-8004.205.1 0.34 -3.4 198,968 - Xcc-8004.205.1 0.34 -1.6 198,968 - Xcc-8004.205.1 0.34 -1.0 198,968 - Xcc-8004.205.1 0.34 -0.8 198,968 - Xcc-8004.205.1 0.34 -1.7 198,969 + Xcc-8004.205.1 0.34 -1.6 198,969 + Xcc-8004.205.1 0.34 +0.4 198,969 + Xcc-8004.205.1 0.34 -1.4 199,171 + Xcc-8004.205.1 0.54 -0.6 199,172 - Xcc-8004.205.1 0.54 -0.2 199,172 - Xcc-8004.205.1 0.54 -1.6 199,172 - Xcc-8004.205.1 0.54 -0.6 199,172 - Xcc-8004.205.1 0.54 -0.6 199,172 - Xcc-8004.205.1 0.54 -0.5 199,226 - Xcc-8004.205.1 0.59 -3.4 199,318 + Xcc-8004.205.1 0.67 -0.8 199,319 - Xcc-8004.205.1 0.68 -1.3 199,319 - Xcc-8004.205.1 0.68 -1.1 199,416 + Xcc-8004.205.1 0.77 -2.0 199,416 + Xcc-8004.205.1 0.77 -1.8 199,417 - Xcc-8004.205.1 0.77 -1.0 199,420 + Xcc-8004.205.1 0.77 +0.1 199,420 + Xcc-8004.205.1 0.77 -0.5 199,420 + Xcc-8004.205.1 0.77 -2.0 199,420 + Xcc-8004.205.1 0.77 -0.9 199,420 + Xcc-8004.205.1 0.77 -0.2 199,420 + Xcc-8004.205.1 0.77 -1.2 199,420 + Xcc-8004.205.1 0.77 +0.1 199,420 + Xcc-8004.205.1 0.77 -0.4 199,420 + Xcc-8004.205.1 0.77 -1.5 199,420 + Xcc-8004.205.1 0.77 -3.0 199,420 + Xcc-8004.205.1 0.77 -0.6 199,420 + Xcc-8004.205.1 0.77 -1.0 199,420 + Xcc-8004.205.1 0.77 -1.2 199,420 + Xcc-8004.205.1 0.77 -1.8 199,420 + Xcc-8004.205.1 0.77 -1.6 199,420 + Xcc-8004.205.1 0.77 -1.5 199,420 + Xcc-8004.205.1 0.77 -0.8 199,421 - Xcc-8004.205.1 0.77 -3.0 199,421 - Xcc-8004.205.1 0.77 -0.2 199,421 - Xcc-8004.205.1 0.77 -1.3 199,421 - Xcc-8004.205.1 0.77 -0.6 199,421 - Xcc-8004.205.1 0.77 -0.0 199,421 - Xcc-8004.205.1 0.77 -3.0 199,421 - Xcc-8004.205.1 0.77 -0.4 199,421 - Xcc-8004.205.1 0.77 -3.3 199,421 - Xcc-8004.205.1 0.77 -1.8 199,421 - Xcc-8004.205.1 0.77 -1.1 199,477 + Xcc-8004.205.1 0.82 -1.1 199,478 - Xcc-8004.205.1 0.83 +0.0 199,478 - Xcc-8004.205.1 0.83 +0.0 199,598 + +0.3 199,599 - -1.1 199,668 + +0.4 199,668 + +0.7 199,668 + -1.0 199,668 + -0.8 199,668 + -0.3 199,668 + +1.4 199,669 - +0.0 199,669 - -0.8 199,669 - +0.2 199,669 - +0.5 199,669 - -0.6 199,669 - +1.3 199,669 - -1.1 199,669 - -1.7 199,792 + +0.3 199,834 + +0.3 199,834 + +1.1 199,834 + -0.6 199,834 + +0.2 199,834 + +0.3 199,834 + +1.4 199,834 + +0.6 199,834 + +0.3 199,834 + +0.5 199,834 + -0.6 199,834 + -0.4 199,834 + -0.1 199,834 + -0.3 199,834 + -1.0 199,834 + -0.2 199,834 + -0.2 199,835 - -0.8 199,835 - -0.8 199,835 - +1.0 199,835 - +1.0 199,835 - +0.1 199,835 - -0.6 199,835 - -0.6 199,835 - -0.3 199,835 - +0.1 199,835 - +1.8 199,835 - -0.3 199,839 - -0.5 199,839 - -0.6 199,839 - -0.4 199,849 + +0.1 199,849 + +0.7 199,849 + +0.3 199,849 + +1.7 199,849 + +0.4 199,849 + +0.7 199,850 - +1.0 199,850 - -0.2 199,850 - +1.5 199,850 - +0.2 199,850 - +0.5 199,850 - +0.1 199,850 - -0.6 199,850 - +0.5 199,887 + -0.0 199,887 + +0.6 199,887 + +0.2 199,887 + -2.1 199,887 + -0.8 199,887 + -0.9 199,887 + +0.5 199,902 + +0.7 199,903 - +0.9 199,903 - -0.6 200,036 + -1.8 200,037 - -3.1 200,047 + +0.3 200,047 + +0.4 200,047 + +0.8 200,047 + +2.4 200,047 + +0.8 200,047 + +0.4 200,047 + -1.1 200,047 + -0.9 200,047 + +0.9 200,047 + -0.3 200,047 + -2.0 200,048 - -0.9 200,048 - -0.3 200,048 - +0.7 200,048 - +0.7 200,048 - +0.6 200,048 - -1.5 200,048 - -0.2 200,048 - -1.0 200,048 - -0.5 200,048 - -1.8 200,048 - -1.1 200,048 - -0.9 200,048 - +0.3 200,048 - -1.2 200,048 - +0.7 200,048 - +0.0 200,048 - -0.3 200,048 - +2.2 200,087 - +0.6 200,087 - -1.2 200,087 - +0.3 200,087 - +0.0 200,087 - -0.7 200,087 - -1.0 200,087 - -0.9 200,087 - -0.7 200,147 + -1.0 200,147 + +0.4 200,147 + +0.2 200,147 + -0.5 200,147 + -0.4 200,148 - -1.8 200,148 - -0.1 200,148 - +0.1 200,186 + +0.5 200,186 + -1.3 200,186 + +0.3 200,187 - +0.7 200,267 + +0.4 200,267 + -0.0 200,268 - +0.9 200,268 - +0.1 200,314 - -0.4 200,314 - -0.6 200,314 - -0.7 200,314 - -1.2 200,314 - +0.5 200,314 - +0.2 200,498 + -1.8 200,499 - -0.6 200,561 + -1.1 200,561 + -1.1 200,561 + -1.8 200,561 + -2.1 200,562 - -2.5 200,576 + -3.0 200,576 + -2.0 200,577 - -1.1 200,577 - -2.8 200,633 + -0.6 200,633 + -0.5 200,633 + -3.2 200,633 + -0.0 200,633 + -1.9 200,633 + -1.6 200,633 + -0.5 200,634 - -0.3 200,634 - -3.9 200,634 - +0.1
Or see this region's nucleotide sequence