Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1967.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1964.1 and Xcc-8004.1966.1 overlap by 4 nucleotidesXcc-8004.1966.1 and Xcc-8004.1967.1 overlap by 4 nucleotidesXcc-8004.1967.1 and Xcc-8004.1968.1 are separated by 201 nucleotides Xcc-8004.1964.1: Xcc-8004.1964.1 - Tryptophan synthase beta chain (EC 4.2.1.20), at 1,893,926 to 1,895,143 Xcc-8004.1964.1 Xcc-8004.1966.1: Xcc-8004.1966.1 - putative; ORF located using Glimmer/Genemark, at 1,895,140 to 1,895,658 Xcc-8004.1966.1 Xcc-8004.1967.1: Xcc-8004.1967.1 - Tryptophan synthase alpha chain (EC 4.2.1.20), at 1,895,655 to 1,896,473 Xcc-8004.1967.1 Xcc-8004.1968.1: Xcc-8004.1968.1 - Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2), at 1,896,675 to 1,897,562 Xcc-8004.1968.1 Position (kb) 1895 1896 1897Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1894.715 kb on + strand, within Xcc-8004.1964.1at 1894.715 kb on + strand, within Xcc-8004.1964.1at 1894.716 kb on - strand, within Xcc-8004.1964.1at 1894.811 kb on + strand, within Xcc-8004.1964.1at 1894.811 kb on + strand, within Xcc-8004.1964.1at 1894.811 kb on + strand, within Xcc-8004.1964.1at 1894.811 kb on + strand, within Xcc-8004.1964.1at 1894.811 kb on + strand, within Xcc-8004.1964.1at 1894.811 kb on + strand, within Xcc-8004.1964.1at 1894.811 kb on + strand, within Xcc-8004.1964.1at 1894.811 kb on + strand, within Xcc-8004.1964.1at 1894.812 kb on - strand, within Xcc-8004.1964.1at 1894.812 kb on - strand, within Xcc-8004.1964.1at 1894.812 kb on - strand, within Xcc-8004.1964.1at 1894.812 kb on - strand, within Xcc-8004.1964.1at 1894.812 kb on - strand, within Xcc-8004.1964.1at 1894.812 kb on - strand, within Xcc-8004.1964.1at 1894.812 kb on - strand, within Xcc-8004.1964.1at 1894.812 kb on - strand, within Xcc-8004.1964.1at 1894.812 kb on - strand, within Xcc-8004.1964.1at 1894.812 kb on - strand, within Xcc-8004.1964.1at 1894.812 kb on - strand, within Xcc-8004.1964.1at 1894.928 kb on + strand, within Xcc-8004.1964.1at 1894.928 kb on + strand, within Xcc-8004.1964.1at 1894.982 kb on - strand, within Xcc-8004.1964.1at 1895.333 kb on - strand, within Xcc-8004.1966.1at 1895.333 kb on - strand, within Xcc-8004.1966.1at 1895.333 kb on - strand, within Xcc-8004.1966.1at 1895.333 kb on - strand, within Xcc-8004.1966.1at 1895.333 kb on - strand, within Xcc-8004.1966.1at 1895.509 kb on + strand, within Xcc-8004.1966.1at 1895.509 kb on + strand, within Xcc-8004.1966.1at 1895.509 kb on + strand, within Xcc-8004.1966.1at 1895.510 kb on - strand, within Xcc-8004.1966.1at 1895.510 kb on - strand, within Xcc-8004.1966.1at 1895.510 kb on - strand, within Xcc-8004.1966.1at 1895.510 kb on - strand, within Xcc-8004.1966.1at 1895.536 kb on + strand, within Xcc-8004.1966.1at 1895.536 kb on + strand, within Xcc-8004.1966.1at 1895.536 kb on + strand, within Xcc-8004.1966.1at 1895.537 kb on - strand, within Xcc-8004.1966.1at 1895.537 kb on - strand, within Xcc-8004.1966.1at 1895.537 kb on - strand, within Xcc-8004.1966.1at 1895.611 kb on + strandat 1895.612 kb on - strandat 1895.612 kb on - strandat 1895.675 kb on + strandat 1895.904 kb on + strand, within Xcc-8004.1967.1at 1895.904 kb on + strand, within Xcc-8004.1967.1at 1895.904 kb on + strand, within Xcc-8004.1967.1at 1895.904 kb on + strand, within Xcc-8004.1967.1at 1895.904 kb on + strand, within Xcc-8004.1967.1at 1895.904 kb on + strand, within Xcc-8004.1967.1at 1895.905 kb on - strand, within Xcc-8004.1967.1at 1895.905 kb on - strand, within Xcc-8004.1967.1at 1895.905 kb on - strand, within Xcc-8004.1967.1at 1895.905 kb on - strand, within Xcc-8004.1967.1at 1895.959 kb on + strand, within Xcc-8004.1967.1at 1895.959 kb on + strand, within Xcc-8004.1967.1at 1895.960 kb on - strand, within Xcc-8004.1967.1at 1895.960 kb on - strand, within Xcc-8004.1967.1at 1895.960 kb on - strand, within Xcc-8004.1967.1at 1895.970 kb on + strand, within Xcc-8004.1967.1at 1896.183 kb on + strand, within Xcc-8004.1967.1at 1896.183 kb on + strand, within Xcc-8004.1967.1at 1896.183 kb on + strand, within Xcc-8004.1967.1at 1896.183 kb on + strand, within Xcc-8004.1967.1at 1896.183 kb on + strand, within Xcc-8004.1967.1at 1896.184 kb on - strand, within Xcc-8004.1967.1at 1896.184 kb on - strand, within Xcc-8004.1967.1at 1896.184 kb on - strand, within Xcc-8004.1967.1at 1896.184 kb on - strand, within Xcc-8004.1967.1at 1896.184 kb on - strand, within Xcc-8004.1967.1at 1896.189 kb on + strand, within Xcc-8004.1967.1at 1896.189 kb on + strand, within Xcc-8004.1967.1at 1896.189 kb on + strand, within Xcc-8004.1967.1at 1896.190 kb on - strand, within Xcc-8004.1967.1at 1896.190 kb on - strand, within Xcc-8004.1967.1at 1896.190 kb on - strand, within Xcc-8004.1967.1at 1896.190 kb on - strand, within Xcc-8004.1967.1at 1896.190 kb on - strand, within Xcc-8004.1967.1at 1896.190 kb on - strand, within Xcc-8004.1967.1at 1896.190 kb on - strand, within Xcc-8004.1967.1at 1896.190 kb on - strand, within Xcc-8004.1967.1at 1896.192 kb on + strand, within Xcc-8004.1967.1at 1896.192 kb on + strand, within Xcc-8004.1967.1at 1896.192 kb on + strand, within Xcc-8004.1967.1at 1896.193 kb on - strand, within Xcc-8004.1967.1at 1896.193 kb on - strand, within Xcc-8004.1967.1at 1896.419 kb on + strandat 1896.618 kb on + strandat 1896.618 kb on + strandat 1896.619 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,894,715 + Xcc-8004.1964.1 0.65 -0.3
1,894,715 + Xcc-8004.1964.1 0.65 -2.4
1,894,716 - Xcc-8004.1964.1 0.65 -3.4
1,894,811 + Xcc-8004.1964.1 0.73 -2.9
1,894,811 + Xcc-8004.1964.1 0.73 +0.5
1,894,811 + Xcc-8004.1964.1 0.73 -2.7
1,894,811 + Xcc-8004.1964.1 0.73 -1.9
1,894,811 + Xcc-8004.1964.1 0.73 -2.4
1,894,811 + Xcc-8004.1964.1 0.73 -1.4
1,894,811 + Xcc-8004.1964.1 0.73 -2.1
1,894,811 + Xcc-8004.1964.1 0.73 -2.6
1,894,812 - Xcc-8004.1964.1 0.73 -0.9
1,894,812 - Xcc-8004.1964.1 0.73 -1.4
1,894,812 - Xcc-8004.1964.1 0.73 -2.7
1,894,812 - Xcc-8004.1964.1 0.73 -3.0
1,894,812 - Xcc-8004.1964.1 0.73 -1.7
1,894,812 - Xcc-8004.1964.1 0.73 -1.4
1,894,812 - Xcc-8004.1964.1 0.73 -3.4
1,894,812 - Xcc-8004.1964.1 0.73 -2.6
1,894,812 - Xcc-8004.1964.1 0.73 -2.5
1,894,812 - Xcc-8004.1964.1 0.73 -2.1
1,894,812 - Xcc-8004.1964.1 0.73 -1.7
1,894,928 + Xcc-8004.1964.1 0.82 -1.9
1,894,928 + Xcc-8004.1964.1 0.82 -3.0
1,894,982 - Xcc-8004.1964.1 0.87 -2.9
1,895,333 - Xcc-8004.1966.1 0.37 -0.4
1,895,333 - Xcc-8004.1966.1 0.37 +0.0
1,895,333 - Xcc-8004.1966.1 0.37 -0.4
1,895,333 - Xcc-8004.1966.1 0.37 +0.2
1,895,333 - Xcc-8004.1966.1 0.37 +0.2
1,895,509 + Xcc-8004.1966.1 0.71 -1.0
1,895,509 + Xcc-8004.1966.1 0.71 -1.4
1,895,509 + Xcc-8004.1966.1 0.71 -0.9
1,895,510 - Xcc-8004.1966.1 0.71 -1.1
1,895,510 - Xcc-8004.1966.1 0.71 -2.1
1,895,510 - Xcc-8004.1966.1 0.71 +0.0
1,895,510 - Xcc-8004.1966.1 0.71 +0.5
1,895,536 + Xcc-8004.1966.1 0.76 +0.3
1,895,536 + Xcc-8004.1966.1 0.76 +0.1
1,895,536 + Xcc-8004.1966.1 0.76 -0.3
1,895,537 - Xcc-8004.1966.1 0.76 -1.6
1,895,537 - Xcc-8004.1966.1 0.76 -1.3
1,895,537 - Xcc-8004.1966.1 0.76 -1.0
1,895,611 + +1.7
1,895,612 - -1.0
1,895,612 - -1.8
1,895,675 + -1.3
1,895,904 + Xcc-8004.1967.1 0.30 -1.8
1,895,904 + Xcc-8004.1967.1 0.30 -1.8
1,895,904 + Xcc-8004.1967.1 0.30 -0.8
1,895,904 + Xcc-8004.1967.1 0.30 -2.3
1,895,904 + Xcc-8004.1967.1 0.30 -1.0
1,895,904 + Xcc-8004.1967.1 0.30 -1.1
1,895,905 - Xcc-8004.1967.1 0.31 -2.0
1,895,905 - Xcc-8004.1967.1 0.31 -1.8
1,895,905 - Xcc-8004.1967.1 0.31 -2.4
1,895,905 - Xcc-8004.1967.1 0.31 -2.8
1,895,959 + Xcc-8004.1967.1 0.37 -2.6
1,895,959 + Xcc-8004.1967.1 0.37 -1.5
1,895,960 - Xcc-8004.1967.1 0.37 -1.6
1,895,960 - Xcc-8004.1967.1 0.37 -2.4
1,895,960 - Xcc-8004.1967.1 0.37 -3.9
1,895,970 + Xcc-8004.1967.1 0.38 +1.5
1,896,183 + Xcc-8004.1967.1 0.64 -0.3
1,896,183 + Xcc-8004.1967.1 0.64 -1.1
1,896,183 + Xcc-8004.1967.1 0.64 -1.7
1,896,183 + Xcc-8004.1967.1 0.64 -2.1
1,896,183 + Xcc-8004.1967.1 0.64 -1.4
1,896,184 - Xcc-8004.1967.1 0.65 -2.5
1,896,184 - Xcc-8004.1967.1 0.65 -2.8
1,896,184 - Xcc-8004.1967.1 0.65 -2.7
1,896,184 - Xcc-8004.1967.1 0.65 -2.4
1,896,184 - Xcc-8004.1967.1 0.65 -2.2
1,896,189 + Xcc-8004.1967.1 0.65 -1.5
1,896,189 + Xcc-8004.1967.1 0.65 -2.0
1,896,189 + Xcc-8004.1967.1 0.65 -3.1
1,896,190 - Xcc-8004.1967.1 0.65 -0.2
1,896,190 - Xcc-8004.1967.1 0.65 -1.8
1,896,190 - Xcc-8004.1967.1 0.65 -0.3
1,896,190 - Xcc-8004.1967.1 0.65 -2.0
1,896,190 - Xcc-8004.1967.1 0.65 +0.5
1,896,190 - Xcc-8004.1967.1 0.65 -1.8
1,896,190 - Xcc-8004.1967.1 0.65 -2.4
1,896,190 - Xcc-8004.1967.1 0.65 -3.7
1,896,192 + Xcc-8004.1967.1 0.66 -0.4
1,896,192 + Xcc-8004.1967.1 0.66 -1.7
1,896,192 + Xcc-8004.1967.1 0.66 -1.0
1,896,193 - Xcc-8004.1967.1 0.66 -1.6
1,896,193 - Xcc-8004.1967.1 0.66 -2.5
1,896,419 + -2.0
1,896,618 + +0.8
1,896,618 + -1.3
1,896,619 - -2.2

Or see this region's nucleotide sequence