Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.194.1 and Xcc-8004.195.1 are separated by 133 nucleotides Xcc-8004.195.1 and Xcc-8004.196.1 are separated by 129 nucleotides
Xcc-8004.194.1: Xcc-8004.194.1 - putative iron-regulated membrane protein, at 185,667 to 187,202
Xcc-8004.194.1
Xcc-8004.195.1: Xcc-8004.195.1 - phosphoesterase, putative, at 187,336 to 187,839
Xcc-8004.195.1
Xcc-8004.196.1: Xcc-8004.196.1 - L-fucose dehydrogenase, at 187,969 to 189,117
Xcc-8004.196.1
Position (kb) 187
188 Strain fitness (log2 ratio) -2
-1
0
1
2 at 186.499 kb on - strand, within Xcc-8004.194.1 at 186.499 kb on - strand, within Xcc-8004.194.1 at 186.537 kb on + strand, within Xcc-8004.194.1 at 186.537 kb on + strand, within Xcc-8004.194.1 at 186.538 kb on - strand, within Xcc-8004.194.1 at 186.538 kb on - strand, within Xcc-8004.194.1 at 186.714 kb on + strand, within Xcc-8004.194.1 at 186.714 kb on + strand, within Xcc-8004.194.1 at 186.715 kb on - strand, within Xcc-8004.194.1 at 186.715 kb on - strand, within Xcc-8004.194.1 at 186.750 kb on + strand, within Xcc-8004.194.1 at 186.751 kb on - strand, within Xcc-8004.194.1 at 186.751 kb on - strand, within Xcc-8004.194.1 at 186.927 kb on + strand, within Xcc-8004.194.1 at 186.928 kb on - strand, within Xcc-8004.194.1 at 186.928 kb on - strand, within Xcc-8004.194.1 at 186.990 kb on + strand, within Xcc-8004.194.1 at 186.991 kb on - strand, within Xcc-8004.194.1 at 186.991 kb on - strand, within Xcc-8004.194.1 at 187.132 kb on - strand at 187.253 kb on + strand at 187.724 kb on - strand, within Xcc-8004.195.1 at 187.817 kb on + strand at 187.817 kb on + strand at 187.817 kb on + strand at 187.818 kb on - strand at 187.818 kb on - strand at 187.818 kb on - strand at 187.974 kb on + strand at 187.974 kb on + strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 188.110 kb on - strand, within Xcc-8004.196.1 at 188.251 kb on + strand, within Xcc-8004.196.1 at 188.251 kb on + strand, within Xcc-8004.196.1 at 188.316 kb on + strand, within Xcc-8004.196.1 at 188.317 kb on - strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.435 kb on - strand, within Xcc-8004.196.1 at 188.509 kb on + strand, within Xcc-8004.196.1 at 188.509 kb on + strand, within Xcc-8004.196.1 at 188.509 kb on + strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 186,499 - Xcc-8004.194.1 0.54 +0.0 186,499 - Xcc-8004.194.1 0.54 -1.0 186,537 + Xcc-8004.194.1 0.57 +1.0 186,537 + Xcc-8004.194.1 0.57 -0.4 186,538 - Xcc-8004.194.1 0.57 +0.4 186,538 - Xcc-8004.194.1 0.57 -0.4 186,714 + Xcc-8004.194.1 0.68 -0.7 186,714 + Xcc-8004.194.1 0.68 -0.0 186,715 - Xcc-8004.194.1 0.68 +0.7 186,715 - Xcc-8004.194.1 0.68 -0.0 186,750 + Xcc-8004.194.1 0.71 -0.2 186,751 - Xcc-8004.194.1 0.71 -1.8 186,751 - Xcc-8004.194.1 0.71 -0.3 186,927 + Xcc-8004.194.1 0.82 -1.3 186,928 - Xcc-8004.194.1 0.82 -1.2 186,928 - Xcc-8004.194.1 0.82 -0.4 186,990 + Xcc-8004.194.1 0.86 +1.0 186,991 - Xcc-8004.194.1 0.86 +0.7 186,991 - Xcc-8004.194.1 0.86 +0.8 187,132 - -0.5 187,253 + -0.2 187,724 - Xcc-8004.195.1 0.77 -0.3 187,817 + +1.9 187,817 + -1.0 187,817 + -0.8 187,818 - +0.1 187,818 - -1.7 187,818 - +0.7 187,974 + -0.4 187,974 + -0.5 187,975 - +0.1 187,975 - -0.2 187,975 - +0.3 187,975 - +0.2 187,975 - -1.3 187,975 - -0.8 187,975 - -1.5 188,110 - Xcc-8004.196.1 0.12 -1.2 188,251 + Xcc-8004.196.1 0.25 -0.6 188,251 + Xcc-8004.196.1 0.25 +0.4 188,316 + Xcc-8004.196.1 0.30 +0.4 188,317 - Xcc-8004.196.1 0.30 -1.1 188,335 + Xcc-8004.196.1 0.32 +0.3 188,335 + Xcc-8004.196.1 0.32 +1.0 188,335 + Xcc-8004.196.1 0.32 +1.1 188,335 + Xcc-8004.196.1 0.32 -0.4 188,335 + Xcc-8004.196.1 0.32 -2.1 188,335 + Xcc-8004.196.1 0.32 -0.1 188,335 + Xcc-8004.196.1 0.32 +0.7 188,335 + Xcc-8004.196.1 0.32 +1.0 188,336 - Xcc-8004.196.1 0.32 -0.1 188,336 - Xcc-8004.196.1 0.32 +0.1 188,336 - Xcc-8004.196.1 0.32 +1.1 188,336 - Xcc-8004.196.1 0.32 -0.8 188,336 - Xcc-8004.196.1 0.32 -1.5 188,336 - Xcc-8004.196.1 0.32 -0.8 188,336 - Xcc-8004.196.1 0.32 -1.3 188,435 - Xcc-8004.196.1 0.41 +1.3 188,509 + Xcc-8004.196.1 0.47 +1.0 188,509 + Xcc-8004.196.1 0.47 +0.1 188,509 + Xcc-8004.196.1 0.47 +1.4 188,510 - Xcc-8004.196.1 0.47 -0.2 188,510 - Xcc-8004.196.1 0.47 -0.2 188,510 - Xcc-8004.196.1 0.47 +0.7 188,510 - Xcc-8004.196.1 0.47 -0.7
Or see this region's nucleotide sequence