Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1884.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1883.1 and Xcc-8004.1884.1 are separated by 169 nucleotidesXcc-8004.1884.1 and Xcc-8004.1885.1 are separated by 153 nucleotides Xcc-8004.1883.1: Xcc-8004.1883.1 - TldD protein, part of TldE/TldD proteolytic complex, at 1,819,161 to 1,820,606 Xcc-8004.1883.1 Xcc-8004.1884.1: Xcc-8004.1884.1 - FIG138315: Putative alpha helix protein, at 1,820,776 to 1,821,357 Xcc-8004.1884.1 Xcc-8004.1885.1: Xcc-8004.1885.1 - TldE protein, part of TldE/TldD proteolytic complex, at 1,821,511 to 1,822,923 Xcc-8004.1885.1 Position (kb) 1820 1821 1822Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1819.797 kb on + strand, within Xcc-8004.1883.1at 1819.797 kb on + strand, within Xcc-8004.1883.1at 1819.798 kb on - strand, within Xcc-8004.1883.1at 1819.998 kb on + strand, within Xcc-8004.1883.1at 1819.998 kb on + strand, within Xcc-8004.1883.1at 1819.999 kb on - strand, within Xcc-8004.1883.1at 1819.999 kb on - strand, within Xcc-8004.1883.1at 1819.999 kb on - strand, within Xcc-8004.1883.1at 1819.999 kb on - strand, within Xcc-8004.1883.1at 1820.088 kb on - strand, within Xcc-8004.1883.1at 1820.151 kb on + strand, within Xcc-8004.1883.1at 1820.152 kb on - strand, within Xcc-8004.1883.1at 1820.152 kb on - strand, within Xcc-8004.1883.1at 1820.252 kb on + strand, within Xcc-8004.1883.1at 1820.252 kb on + strand, within Xcc-8004.1883.1at 1820.252 kb on + strand, within Xcc-8004.1883.1at 1820.252 kb on + strand, within Xcc-8004.1883.1at 1820.253 kb on - strand, within Xcc-8004.1883.1at 1820.253 kb on - strand, within Xcc-8004.1883.1at 1820.253 kb on - strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.256 kb on + strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.257 kb on - strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.316 kb on + strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.317 kb on - strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.364 kb on + strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.365 kb on - strand, within Xcc-8004.1883.1at 1820.388 kb on + strand, within Xcc-8004.1883.1at 1820.388 kb on + strand, within Xcc-8004.1883.1at 1820.388 kb on + strand, within Xcc-8004.1883.1at 1820.389 kb on - strand, within Xcc-8004.1883.1at 1820.777 kb on + strandat 1820.777 kb on + strandat 1820.777 kb on + strandat 1820.777 kb on + strandat 1820.778 kb on - strandat 1820.778 kb on - strandat 1820.778 kb on - strandat 1820.966 kb on + strand, within Xcc-8004.1884.1at 1821.363 kb on + strandat 1821.363 kb on + strandat 1821.363 kb on + strandat 1821.364 kb on - strandat 1821.364 kb on - strandat 1821.364 kb on - strandat 1821.364 kb on - strandat 1821.364 kb on - strandat 1821.364 kb on - strandat 1821.364 kb on - strandat 1821.381 kb on + strandat 1821.381 kb on + strandat 1821.381 kb on + strandat 1821.381 kb on + strandat 1821.381 kb on + strandat 1821.382 kb on - strandat 1821.382 kb on - strandat 1821.382 kb on - strandat 1821.382 kb on - strandat 1821.549 kb on + strandat 1821.778 kb on + strand, within Xcc-8004.1885.1at 1821.778 kb on + strand, within Xcc-8004.1885.1at 1821.778 kb on + strand, within Xcc-8004.1885.1at 1821.779 kb on - strand, within Xcc-8004.1885.1at 1821.779 kb on - strand, within Xcc-8004.1885.1at 1821.779 kb on - strand, within Xcc-8004.1885.1at 1821.871 kb on + strand, within Xcc-8004.1885.1at 1821.872 kb on - strand, within Xcc-8004.1885.1at 1821.874 kb on - strand, within Xcc-8004.1885.1at 1822.035 kb on + strand, within Xcc-8004.1885.1at 1822.035 kb on + strand, within Xcc-8004.1885.1at 1822.035 kb on + strand, within Xcc-8004.1885.1at 1822.036 kb on - strand, within Xcc-8004.1885.1at 1822.036 kb on - strand, within Xcc-8004.1885.1at 1822.036 kb on - strand, within Xcc-8004.1885.1at 1822.081 kb on + strand, within Xcc-8004.1885.1at 1822.081 kb on + strand, within Xcc-8004.1885.1at 1822.081 kb on + strand, within Xcc-8004.1885.1at 1822.081 kb on + strand, within Xcc-8004.1885.1at 1822.082 kb on - strand, within Xcc-8004.1885.1at 1822.082 kb on - strand, within Xcc-8004.1885.1at 1822.082 kb on - strand, within Xcc-8004.1885.1at 1822.082 kb on - strand, within Xcc-8004.1885.1at 1822.082 kb on - strand, within Xcc-8004.1885.1at 1822.186 kb on + strand, within Xcc-8004.1885.1at 1822.186 kb on + strand, within Xcc-8004.1885.1at 1822.186 kb on + strand, within Xcc-8004.1885.1at 1822.186 kb on + strand, within Xcc-8004.1885.1at 1822.186 kb on + strand, within Xcc-8004.1885.1at 1822.186 kb on + strand, within Xcc-8004.1885.1at 1822.186 kb on + strand, within Xcc-8004.1885.1at 1822.186 kb on + strand, within Xcc-8004.1885.1at 1822.187 kb on - strand, within Xcc-8004.1885.1at 1822.187 kb on - strand, within Xcc-8004.1885.1at 1822.187 kb on - strand, within Xcc-8004.1885.1at 1822.187 kb on - strand, within Xcc-8004.1885.1at 1822.187 kb on - strand, within Xcc-8004.1885.1at 1822.187 kb on - strand, within Xcc-8004.1885.1at 1822.187 kb on - strand, within Xcc-8004.1885.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,819,797 + Xcc-8004.1883.1 0.44 +0.4
1,819,797 + Xcc-8004.1883.1 0.44 +0.8
1,819,798 - Xcc-8004.1883.1 0.44 +0.6
1,819,998 + Xcc-8004.1883.1 0.58 +1.0
1,819,998 + Xcc-8004.1883.1 0.58 +0.6
1,819,999 - Xcc-8004.1883.1 0.58 +0.4
1,819,999 - Xcc-8004.1883.1 0.58 +0.6
1,819,999 - Xcc-8004.1883.1 0.58 -0.9
1,819,999 - Xcc-8004.1883.1 0.58 +0.9
1,820,088 - Xcc-8004.1883.1 0.64 +1.3
1,820,151 + Xcc-8004.1883.1 0.68 -0.2
1,820,152 - Xcc-8004.1883.1 0.69 -0.1
1,820,152 - Xcc-8004.1883.1 0.69 -0.9
1,820,252 + Xcc-8004.1883.1 0.75 +1.1
1,820,252 + Xcc-8004.1883.1 0.75 +1.2
1,820,252 + Xcc-8004.1883.1 0.75 +0.1
1,820,252 + Xcc-8004.1883.1 0.75 -0.1
1,820,253 - Xcc-8004.1883.1 0.76 +0.6
1,820,253 - Xcc-8004.1883.1 0.76 -1.8
1,820,253 - Xcc-8004.1883.1 0.76 -1.7
1,820,256 + Xcc-8004.1883.1 0.76 +2.8
1,820,256 + Xcc-8004.1883.1 0.76 +1.5
1,820,256 + Xcc-8004.1883.1 0.76 +0.8
1,820,256 + Xcc-8004.1883.1 0.76 +1.2
1,820,256 + Xcc-8004.1883.1 0.76 +1.4
1,820,256 + Xcc-8004.1883.1 0.76 +0.4
1,820,256 + Xcc-8004.1883.1 0.76 +1.1
1,820,256 + Xcc-8004.1883.1 0.76 +1.0
1,820,256 + Xcc-8004.1883.1 0.76 +0.7
1,820,256 + Xcc-8004.1883.1 0.76 +1.1
1,820,256 + Xcc-8004.1883.1 0.76 +1.2
1,820,256 + Xcc-8004.1883.1 0.76 +0.8
1,820,256 + Xcc-8004.1883.1 0.76 +1.8
1,820,256 + Xcc-8004.1883.1 0.76 -0.1
1,820,256 + Xcc-8004.1883.1 0.76 -0.0
1,820,257 - Xcc-8004.1883.1 0.76 +0.2
1,820,257 - Xcc-8004.1883.1 0.76 -1.7
1,820,257 - Xcc-8004.1883.1 0.76 +0.2
1,820,257 - Xcc-8004.1883.1 0.76 +0.1
1,820,257 - Xcc-8004.1883.1 0.76 +0.1
1,820,257 - Xcc-8004.1883.1 0.76 -0.9
1,820,257 - Xcc-8004.1883.1 0.76 +0.4
1,820,257 - Xcc-8004.1883.1 0.76 -0.4
1,820,257 - Xcc-8004.1883.1 0.76 -0.3
1,820,257 - Xcc-8004.1883.1 0.76 -2.1
1,820,257 - Xcc-8004.1883.1 0.76 +0.3
1,820,257 - Xcc-8004.1883.1 0.76 -0.1
1,820,257 - Xcc-8004.1883.1 0.76 +0.7
1,820,316 + Xcc-8004.1883.1 0.80 +0.7
1,820,316 + Xcc-8004.1883.1 0.80 +0.9
1,820,316 + Xcc-8004.1883.1 0.80 +1.4
1,820,316 + Xcc-8004.1883.1 0.80 +1.0
1,820,316 + Xcc-8004.1883.1 0.80 +0.2
1,820,316 + Xcc-8004.1883.1 0.80 +0.3
1,820,316 + Xcc-8004.1883.1 0.80 +0.4
1,820,316 + Xcc-8004.1883.1 0.80 -0.0
1,820,316 + Xcc-8004.1883.1 0.80 +1.4
1,820,317 - Xcc-8004.1883.1 0.80 +0.6
1,820,317 - Xcc-8004.1883.1 0.80 +0.4
1,820,317 - Xcc-8004.1883.1 0.80 +0.4
1,820,317 - Xcc-8004.1883.1 0.80 -1.0
1,820,317 - Xcc-8004.1883.1 0.80 +0.4
1,820,317 - Xcc-8004.1883.1 0.80 -0.2
1,820,317 - Xcc-8004.1883.1 0.80 +1.1
1,820,317 - Xcc-8004.1883.1 0.80 +0.0
1,820,317 - Xcc-8004.1883.1 0.80 +0.8
1,820,317 - Xcc-8004.1883.1 0.80 +0.2
1,820,317 - Xcc-8004.1883.1 0.80 +0.1
1,820,317 - Xcc-8004.1883.1 0.80 +0.0
1,820,317 - Xcc-8004.1883.1 0.80 +0.9
1,820,364 + Xcc-8004.1883.1 0.83 -0.8
1,820,364 + Xcc-8004.1883.1 0.83 +0.9
1,820,364 + Xcc-8004.1883.1 0.83 +0.3
1,820,364 + Xcc-8004.1883.1 0.83 -0.5
1,820,364 + Xcc-8004.1883.1 0.83 +0.5
1,820,364 + Xcc-8004.1883.1 0.83 +1.4
1,820,364 + Xcc-8004.1883.1 0.83 +0.7
1,820,364 + Xcc-8004.1883.1 0.83 +1.3
1,820,364 + Xcc-8004.1883.1 0.83 +0.6
1,820,364 + Xcc-8004.1883.1 0.83 +0.1
1,820,365 - Xcc-8004.1883.1 0.83 -0.3
1,820,365 - Xcc-8004.1883.1 0.83 +1.1
1,820,365 - Xcc-8004.1883.1 0.83 -0.8
1,820,365 - Xcc-8004.1883.1 0.83 +0.9
1,820,365 - Xcc-8004.1883.1 0.83 -0.8
1,820,365 - Xcc-8004.1883.1 0.83 -1.0
1,820,365 - Xcc-8004.1883.1 0.83 +0.8
1,820,365 - Xcc-8004.1883.1 0.83 +0.2
1,820,365 - Xcc-8004.1883.1 0.83 +0.3
1,820,365 - Xcc-8004.1883.1 0.83 +0.2
1,820,365 - Xcc-8004.1883.1 0.83 +1.2
1,820,388 + Xcc-8004.1883.1 0.85 +0.3
1,820,388 + Xcc-8004.1883.1 0.85 +0.4
1,820,388 + Xcc-8004.1883.1 0.85 +0.4
1,820,389 - Xcc-8004.1883.1 0.85 +0.6
1,820,777 + -0.0
1,820,777 + +0.3
1,820,777 + -0.7
1,820,777 + -0.9
1,820,778 - +0.7
1,820,778 - +0.8
1,820,778 - +0.8
1,820,966 + Xcc-8004.1884.1 0.33 +0.9
1,821,363 + +0.8
1,821,363 + +1.1
1,821,363 + -0.1
1,821,364 - +0.2
1,821,364 - -1.1
1,821,364 - +1.5
1,821,364 - +0.3
1,821,364 - +0.5
1,821,364 - -0.7
1,821,364 - +1.3
1,821,381 + +0.3
1,821,381 + -0.9
1,821,381 + +0.8
1,821,381 + -0.4
1,821,381 + +0.4
1,821,382 - +0.1
1,821,382 - -0.1
1,821,382 - -0.5
1,821,382 - +0.8
1,821,549 + +0.4
1,821,778 + Xcc-8004.1885.1 0.19 +0.7
1,821,778 + Xcc-8004.1885.1 0.19 +1.1
1,821,778 + Xcc-8004.1885.1 0.19 +0.7
1,821,779 - Xcc-8004.1885.1 0.19 +0.2
1,821,779 - Xcc-8004.1885.1 0.19 +0.1
1,821,779 - Xcc-8004.1885.1 0.19 +1.3
1,821,871 + Xcc-8004.1885.1 0.25 +0.3
1,821,872 - Xcc-8004.1885.1 0.26 -0.8
1,821,874 - Xcc-8004.1885.1 0.26 +0.3
1,822,035 + Xcc-8004.1885.1 0.37 -0.8
1,822,035 + Xcc-8004.1885.1 0.37 +0.1
1,822,035 + Xcc-8004.1885.1 0.37 -0.1
1,822,036 - Xcc-8004.1885.1 0.37 +1.9
1,822,036 - Xcc-8004.1885.1 0.37 -0.6
1,822,036 - Xcc-8004.1885.1 0.37 -0.0
1,822,081 + Xcc-8004.1885.1 0.40 +0.9
1,822,081 + Xcc-8004.1885.1 0.40 +1.3
1,822,081 + Xcc-8004.1885.1 0.40 -0.2
1,822,081 + Xcc-8004.1885.1 0.40 +1.0
1,822,082 - Xcc-8004.1885.1 0.40 +1.1
1,822,082 - Xcc-8004.1885.1 0.40 -0.3
1,822,082 - Xcc-8004.1885.1 0.40 +0.5
1,822,082 - Xcc-8004.1885.1 0.40 +0.3
1,822,082 - Xcc-8004.1885.1 0.40 +0.4
1,822,186 + Xcc-8004.1885.1 0.48 -1.6
1,822,186 + Xcc-8004.1885.1 0.48 +0.2
1,822,186 + Xcc-8004.1885.1 0.48 +1.2
1,822,186 + Xcc-8004.1885.1 0.48 +0.8
1,822,186 + Xcc-8004.1885.1 0.48 -0.6
1,822,186 + Xcc-8004.1885.1 0.48 -0.6
1,822,186 + Xcc-8004.1885.1 0.48 +0.9
1,822,186 + Xcc-8004.1885.1 0.48 -0.6
1,822,187 - Xcc-8004.1885.1 0.48 -2.4
1,822,187 - Xcc-8004.1885.1 0.48 +1.1
1,822,187 - Xcc-8004.1885.1 0.48 +1.0
1,822,187 - Xcc-8004.1885.1 0.48 +0.8
1,822,187 - Xcc-8004.1885.1 0.48 +0.4
1,822,187 - Xcc-8004.1885.1 0.48 +0.7
1,822,187 - Xcc-8004.1885.1 0.48 +0.4

Or see this region's nucleotide sequence