Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1882.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,818,190	+				-1.2
1,818,190	+				-1.4
1,818,190	+				-0.6
1,818,190	+				-1.1
1,818,190	+				-0.6
1,818,190	+				-1.6
1,818,190	+				-0.2
1,818,190	+				-0.2
1,818,190	+				+0.5
1,818,191	-				+1.0
1,818,191	-				-0.2
1,818,191	-				-0.7
1,818,191	-				-0.8
1,818,191	-				-1.2
1,818,191	-				-0.0
1,818,292	+				-0.2
1,818,293	-				-0.5
1,818,419	+		Xcc-8004.1882.1	0.15	+0.4
1,818,420	-		Xcc-8004.1882.1	0.15	-0.7
1,818,584	-		Xcc-8004.1882.1	0.37	-0.2
1,818,642	+		Xcc-8004.1882.1	0.44	+0.4
1,818,668	+		Xcc-8004.1882.1	0.48	-0.1
1,818,669	-		Xcc-8004.1882.1	0.48	-0.8
1,818,669	-		Xcc-8004.1882.1	0.48	-0.4
1,818,669	-		Xcc-8004.1882.1	0.48	+0.3
1,818,963	-		Xcc-8004.1882.1	0.87	-0.5
1,818,968	+		Xcc-8004.1882.1	0.87	+0.4
1,818,968	+		Xcc-8004.1882.1	0.87	-0.9
1,818,968	+		Xcc-8004.1882.1	0.87	+1.0
1,818,968	+		Xcc-8004.1882.1	0.87	+0.1
1,818,968	+		Xcc-8004.1882.1	0.87	+0.3
1,818,968	+		Xcc-8004.1882.1	0.87	+0.8
1,818,968	+		Xcc-8004.1882.1	0.87	-0.2
1,818,969	-		Xcc-8004.1882.1	0.88	-0.1
1,818,969	-		Xcc-8004.1882.1	0.88	+0.9
1,818,969	-		Xcc-8004.1882.1	0.88	+1.1
1,818,969	-		Xcc-8004.1882.1	0.88	-0.7
1,818,969	-		Xcc-8004.1882.1	0.88	+0.8
1,819,097	+				+0.6
1,819,220	+				+0.5
1,819,284	+				+0.2
1,819,284	+				+1.1
1,819,284	+				-0.1
1,819,284	+				-1.2
1,819,285	-				-0.5
1,819,285	-				+0.2
1,819,285	-				+0.6
1,819,285	-				+0.8
1,819,408	-		Xcc-8004.1883.1	0.17	+1.1
1,819,408	-		Xcc-8004.1883.1	0.17	+0.5
1,819,527	+		Xcc-8004.1883.1	0.25	+0.8
1,819,600	-		Xcc-8004.1883.1	0.30	+1.2
1,819,600	-		Xcc-8004.1883.1	0.30	+0.4
1,819,666	+		Xcc-8004.1883.1	0.35	+0.9
1,819,666	+		Xcc-8004.1883.1	0.35	-0.1
1,819,771	-		Xcc-8004.1883.1	0.42	-1.1
1,819,797	+		Xcc-8004.1883.1	0.44	+0.4
1,819,797	+		Xcc-8004.1883.1	0.44	+0.8
1,819,798	-		Xcc-8004.1883.1	0.44	+0.6
1,819,998	+		Xcc-8004.1883.1	0.58	+1.0
1,819,998	+		Xcc-8004.1883.1	0.58	+0.6
1,819,999	-		Xcc-8004.1883.1	0.58	+0.4
1,819,999	-		Xcc-8004.1883.1	0.58	+0.6
1,819,999	-		Xcc-8004.1883.1	0.58	-0.9
1,819,999	-		Xcc-8004.1883.1	0.58	+0.9