Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1879.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,811,222	-				-1.3
1,811,222	-				-0.3
1,811,285	-				-1.4
1,811,296	-				-2.1
1,811,296	-				-0.9
1,811,495	+		Xcc-8004.1878.1	0.26	-0.1
1,811,496	-		Xcc-8004.1878.1	0.26	+1.2
1,811,496	-		Xcc-8004.1878.1	0.26	+0.6
1,811,549	+		Xcc-8004.1878.1	0.33	+0.2
1,811,549	+		Xcc-8004.1878.1	0.33	+0.1
1,811,549	+		Xcc-8004.1878.1	0.33	-0.2
1,811,549	+		Xcc-8004.1878.1	0.33	-0.9
1,811,550	-		Xcc-8004.1878.1	0.34	-1.3
1,811,550	-		Xcc-8004.1878.1	0.34	-0.3
1,811,550	-		Xcc-8004.1878.1	0.34	+0.4
1,811,550	-		Xcc-8004.1878.1	0.34	+0.6
1,811,626	+		Xcc-8004.1878.1	0.44	-0.0
1,811,627	-		Xcc-8004.1878.1	0.44	+0.1
1,811,627	-		Xcc-8004.1878.1	0.44	-0.2
1,811,717	+		Xcc-8004.1878.1	0.56	+0.8
1,811,717	+		Xcc-8004.1878.1	0.56	-0.8
1,811,717	+		Xcc-8004.1878.1	0.56	+0.0
1,811,717	+		Xcc-8004.1878.1	0.56	+0.0
1,811,717	+		Xcc-8004.1878.1	0.56	+0.7
1,811,717	+		Xcc-8004.1878.1	0.56	-0.7
1,811,717	+		Xcc-8004.1878.1	0.56	+0.8
1,811,718	-		Xcc-8004.1878.1	0.56	+0.2
1,811,718	-		Xcc-8004.1878.1	0.56	-1.4
1,811,718	-		Xcc-8004.1878.1	0.56	-0.4
1,811,718	-		Xcc-8004.1878.1	0.56	+0.1
1,811,718	-		Xcc-8004.1878.1	0.56	-1.0
1,811,718	-		Xcc-8004.1878.1	0.56	+0.2
1,811,718	-		Xcc-8004.1878.1	0.56	+0.1
1,811,802	+		Xcc-8004.1878.1	0.68	-0.6
1,811,802	+		Xcc-8004.1878.1	0.68	+1.2
1,811,802	+		Xcc-8004.1878.1	0.68	+1.3
1,811,803	-		Xcc-8004.1878.1	0.68	+0.9
1,811,803	-		Xcc-8004.1878.1	0.68	-0.5
1,811,803	-		Xcc-8004.1878.1	0.68	-2.2
1,811,803	-		Xcc-8004.1878.1	0.68	+0.4
1,811,951	+		Xcc-8004.1878.1	0.88	-1.4
1,811,951	+		Xcc-8004.1878.1	0.88	+1.0
1,811,951	+		Xcc-8004.1878.1	0.88	+0.2
1,811,951	+		Xcc-8004.1878.1	0.88	+0.4
1,811,951	+		Xcc-8004.1878.1	0.88	+0.2
1,811,951	+		Xcc-8004.1878.1	0.88	+0.3
1,811,952	-		Xcc-8004.1878.1	0.88	-1.3
1,811,952	-		Xcc-8004.1878.1	0.88	+0.6
1,811,952	-		Xcc-8004.1878.1	0.88	+0.5
1,811,952	-		Xcc-8004.1878.1	0.88	+0.8
1,812,033	+				+0.9
1,812,034	-				+0.5
1,812,034	-				-0.8
1,812,085	+				-1.2
1,812,085	+				+0.5
1,812,085	+				+0.1
1,812,086	-				+1.5
1,812,086	-				+0.3
1,812,086	-				+0.1
1,812,086	-				+1.0
1,812,086	-				-0.2
1,812,150	+				-0.0
1,812,150	+				+0.5
1,812,150	+				+0.4
1,812,150	+				+1.8
1,812,150	+				+0.5
1,812,150	+				-0.6
1,812,150	+				+0.4
1,812,150	+				+0.3
1,812,151	-				-0.2
1,812,151	-				-0.2
1,812,151	-				+1.1
1,812,151	-				+0.9
1,812,151	-				-1.0
1,812,151	-				+0.2
1,812,151	-				+0.6
1,812,151	-				-0.6
1,812,151	-				-0.5
1,812,151	-				-1.5
1,812,168	+				+0.6
1,812,169	-				-0.1
1,812,169	-				+0.4
1,812,169	-				-0.6
1,812,169	-				-0.3
1,812,285	+		Xcc-8004.1879.1	0.21	+0.2
1,812,285	+		Xcc-8004.1879.1	0.21	-1.2
1,812,285	+		Xcc-8004.1879.1	0.21	+1.4
1,812,285	+		Xcc-8004.1879.1	0.21	+1.1
1,812,285	+		Xcc-8004.1879.1	0.21	+0.3
1,812,285	+		Xcc-8004.1879.1	0.21	+0.8
1,812,285	+		Xcc-8004.1879.1	0.21	-0.8
1,812,286	-		Xcc-8004.1879.1	0.22	-0.1
1,812,286	-		Xcc-8004.1879.1	0.22	-0.3
1,812,286	-		Xcc-8004.1879.1	0.22	+0.8
1,812,286	-		Xcc-8004.1879.1	0.22	-0.9
1,812,286	-		Xcc-8004.1879.1	0.22	+0.1
1,812,286	-		Xcc-8004.1879.1	0.22	+0.9
1,812,286	-		Xcc-8004.1879.1	0.22	-0.8
1,812,286	-		Xcc-8004.1879.1	0.22	+0.4
1,812,286	-		Xcc-8004.1879.1	0.22	-0.8
1,812,286	-		Xcc-8004.1879.1	0.22	-1.1
1,812,286	-		Xcc-8004.1879.1	0.22	+1.1
1,812,335	-		Xcc-8004.1879.1	0.30	-0.9
1,812,576	+		Xcc-8004.1879.1	0.72	+1.3
1,812,577	-		Xcc-8004.1879.1	0.72	-0.8
1,812,648	-		Xcc-8004.1879.1	0.85	+0.4
1,812,648	-		Xcc-8004.1879.1	0.85	-0.5
1,812,666	+		Xcc-8004.1879.1	0.88	-0.0
1,812,667	-		Xcc-8004.1879.1	0.88	-0.1
1,812,667	-		Xcc-8004.1879.1	0.88	+0.5
1,812,732	+				+0.2
1,812,732	+				-0.9
1,812,732	+				-0.3
1,812,732	+				-0.8
1,812,732	+				-0.4
1,812,732	+				-1.8
1,812,732	+				-1.2
1,812,732	+				-0.8
1,812,732	+				+0.3
1,812,733	-				-1.4
1,812,733	-				-1.6
1,812,733	-				-1.8
1,812,733	-				-1.2
1,812,733	-				+1.8
1,812,733	-				-2.2
1,812,818	+				+0.5
1,812,854	+				-1.7
1,812,854	+				-1.4
1,812,854	+				-0.6
1,812,854	+				+0.2
1,812,854	+				-2.2
1,812,854	+				-1.1
1,812,855	-				-0.4
1,812,858	+				-1.6
1,812,858	+				-1.8
1,812,858	+				-0.4
1,812,858	+				-0.1
1,812,858	+				-1.6
1,812,858	+				-0.7
1,812,858	+				-1.6
1,812,858	+				+0.3
1,812,858	+				+0.8
1,812,859	-				-1.1
1,812,859	-				-0.4
1,812,859	-				-1.4
1,812,859	-				-0.3
1,813,144	-		Xcc-8004.1880.1	0.27	-2.8
1,813,327	-		Xcc-8004.1880.1	0.39	-0.8
1,813,392	+		Xcc-8004.1880.1	0.44	-0.2
1,813,392	+		Xcc-8004.1880.1	0.44	+0.4
1,813,392	+		Xcc-8004.1880.1	0.44	-0.7
1,813,393	-		Xcc-8004.1880.1	0.44	-1.7
1,813,509	+		Xcc-8004.1880.1	0.52	-1.1
1,813,509	+		Xcc-8004.1880.1	0.52	+1.5
1,813,509	+		Xcc-8004.1880.1	0.52	-0.1
1,813,509	+		Xcc-8004.1880.1	0.52	-0.8
1,813,509	+		Xcc-8004.1880.1	0.52	-2.3
1,813,509	+		Xcc-8004.1880.1	0.52	-2.6
1,813,510	-		Xcc-8004.1880.1	0.52	-0.2
1,813,510	-		Xcc-8004.1880.1	0.52	-1.9
1,813,510	-		Xcc-8004.1880.1	0.52	-1.4
1,813,510	-		Xcc-8004.1880.1	0.52	+0.4
1,813,510	-		Xcc-8004.1880.1	0.52	-1.1
1,813,510	-		Xcc-8004.1880.1	0.52	-1.1
1,813,510	-		Xcc-8004.1880.1	0.52	-0.6
1,813,542	+		Xcc-8004.1880.1	0.54	-1.8
1,813,542	+		Xcc-8004.1880.1	0.54	-1.1
1,813,542	+		Xcc-8004.1880.1	0.54	+0.4
1,813,542	+		Xcc-8004.1880.1	0.54	-2.3
1,813,543	-		Xcc-8004.1880.1	0.54	-1.2
1,813,543	-		Xcc-8004.1880.1	0.54	-0.8
1,813,543	-		Xcc-8004.1880.1	0.54	-2.1
1,813,572	+		Xcc-8004.1880.1	0.56	-0.9
1,813,572	+		Xcc-8004.1880.1	0.56	-0.6
1,813,572	+		Xcc-8004.1880.1	0.56	+1.8
1,813,572	+		Xcc-8004.1880.1	0.56	-0.6
1,813,572	+		Xcc-8004.1880.1	0.56	-0.6