Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1873.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,806,354	-		Xcc-8004.1873.1	0.22	-2.2
1,806,402	+		Xcc-8004.1873.1	0.27	+0.0
1,806,402	+		Xcc-8004.1873.1	0.27	-0.4
1,806,403	-		Xcc-8004.1873.1	0.27	-2.7
1,806,403	-		Xcc-8004.1873.1	0.27	-0.6
1,806,403	-		Xcc-8004.1873.1	0.27	-0.8
1,806,643	-		Xcc-8004.1873.1	0.54	-0.6
1,807,029	+				-2.6
1,807,030	-				-1.6
1,807,030	-				-1.7
1,807,030	-				+0.4
1,807,030	-				-1.7
1,807,079	+				-0.4
1,807,079	+				-0.5
1,807,079	+				+0.1
1,807,079	+				+0.8
1,807,079	+				+0.8
1,807,080	-				-0.8
1,807,080	-				+0.4
1,807,081	+				+0.5
1,807,081	+				-0.2
1,807,081	+				-0.7
1,807,081	+				+0.1
1,807,081	+				+0.5
1,807,081	+				-0.2
1,807,081	+				-0.2
1,807,081	+				-0.3
1,807,081	+				-0.2
1,807,081	+				-0.0
1,807,081	+				-0.2
1,807,082	-				-0.1
1,807,082	-				+0.4
1,807,082	-				-0.7
1,807,082	-				-0.4
1,807,082	-				+0.2
1,807,082	-				-1.6
1,807,082	-				+0.2
1,807,096	+				-0.1
1,807,096	+				-2.4
1,807,097	-				+0.0
1,807,265	+		Xcc-8004.1874.1	0.36	-0.2
1,807,265	+		Xcc-8004.1874.1	0.36	-1.2
1,807,265	+		Xcc-8004.1874.1	0.36	+0.3
1,807,265	+		Xcc-8004.1874.1	0.36	-0.6
1,807,265	+		Xcc-8004.1874.1	0.36	+1.2
1,807,265	+		Xcc-8004.1874.1	0.36	+0.4
1,807,265	+		Xcc-8004.1874.1	0.36	+0.2
1,807,265	+		Xcc-8004.1874.1	0.36	+0.2
1,807,266	-		Xcc-8004.1874.1	0.37	-0.2
1,807,451	+		Xcc-8004.1874.1	0.81	+0.9
1,807,451	+		Xcc-8004.1874.1	0.81	-1.5
1,807,451	+		Xcc-8004.1874.1	0.81	+0.4
1,807,451	+		Xcc-8004.1874.1	0.81	-0.9
1,807,451	+		Xcc-8004.1874.1	0.81	+0.1
1,807,451	+		Xcc-8004.1874.1	0.81	-0.2
1,807,451	+		Xcc-8004.1874.1	0.81	-0.2
1,807,451	+		Xcc-8004.1874.1	0.81	+0.2
1,807,452	-		Xcc-8004.1874.1	0.81	+0.2
1,807,452	-		Xcc-8004.1874.1	0.81	+1.1
1,807,529	+				-1.7
1,807,529	+				+0.1
1,807,529	+				+0.3
1,807,529	+				-0.7
1,807,529	+				-0.2
1,807,529	+				+0.3
1,807,529	+				-1.0
1,807,529	+				+0.0
1,807,529	+				+0.4
1,807,529	+				-0.2
1,807,530	-				+0.8
1,807,530	-				-0.2
1,807,530	-				-0.2
1,807,530	-				+1.1
1,807,530	-				-0.9
1,807,605	+				-0.5
1,807,605	+				+1.8
1,807,605	+				+0.2
1,807,606	-				-0.8
1,807,606	-				-0.6
1,807,606	-				-1.6
1,807,606	-				-0.1
1,807,606	-				-0.6
1,807,606	-				-1.4
1,807,606	-				+0.2
1,807,606	-				+0.2
1,807,796	+		Xcc-8004.1875.1	0.12	+1.4
1,807,796	+		Xcc-8004.1875.1	0.12	-0.7
1,807,796	+		Xcc-8004.1875.1	0.12	-1.1
1,807,796	+		Xcc-8004.1875.1	0.12	-0.4
1,807,797	-		Xcc-8004.1875.1	0.13	-0.6
1,807,797	-		Xcc-8004.1875.1	0.13	+0.3
1,807,797	-		Xcc-8004.1875.1	0.13	-1.1
1,807,797	-		Xcc-8004.1875.1	0.13	+0.6
1,807,797	-		Xcc-8004.1875.1	0.13	+0.5
1,807,800	+		Xcc-8004.1875.1	0.13	-0.1
1,807,800	+		Xcc-8004.1875.1	0.13	+0.3
1,807,800	+		Xcc-8004.1875.1	0.13	-0.8
1,807,800	+		Xcc-8004.1875.1	0.13	-0.2
1,807,800	+		Xcc-8004.1875.1	0.13	+0.1
1,807,800	+		Xcc-8004.1875.1	0.13	-1.7
1,807,800	+		Xcc-8004.1875.1	0.13	-0.0
1,807,800	+		Xcc-8004.1875.1	0.13	+0.0
1,807,801	-		Xcc-8004.1875.1	0.13	-1.1
1,807,801	-		Xcc-8004.1875.1	0.13	-0.7
1,807,801	-		Xcc-8004.1875.1	0.13	-0.4
1,807,801	-		Xcc-8004.1875.1	0.13	-0.4
1,807,801	-		Xcc-8004.1875.1	0.13	-0.5
1,807,801	-		Xcc-8004.1875.1	0.13	-0.0
1,807,801	-		Xcc-8004.1875.1	0.13	-0.4
1,807,801	-		Xcc-8004.1875.1	0.13	+0.4
1,807,801	-		Xcc-8004.1875.1	0.13	+0.2
1,807,801	-		Xcc-8004.1875.1	0.13	-1.1
1,807,852	-		Xcc-8004.1875.1	0.16	-1.4
1,807,978	+		Xcc-8004.1875.1	0.24	+0.1
1,807,979	-		Xcc-8004.1875.1	0.24	-1.4