Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.186.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.185.1 and Xcc-8004.186.1 overlap by 1 nucleotidesXcc-8004.186.1 and Xcc-8004.187.1 are separated by 72 nucleotidesXcc-8004.187.1 and Xcc-8004.188.1 overlap by 101 nucleotidesXcc-8004.188.1 and Xcc-8004.189.1 overlap by 4 nucleotides Xcc-8004.185.1: Xcc-8004.185.1 - Trehalose synthase (EC 5.4.99.16), at 178,144 to 181,494 Xcc-8004.185.1 Xcc-8004.186.1: Xcc-8004.186.1 - 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18), at 181,494 to 183,689 Xcc-8004.186.1 Xcc-8004.187.1: Xcc-8004.187.1 - Mobile element protein, at 183,762 to 184,280 Xcc-8004.187.1 Xcc-8004.188.1: Xcc-8004.188.1 - Mobile element protein, at 184,180 to 184,344 Xcc-8004.188.1 Xcc-8004.189.1: Xcc-8004.189.1 - Mobile element protein, at 184,341 to 184,532 Xcc-8004.189.1 Position (kb) 181 182 183 184Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 180.664 kb on + strand, within Xcc-8004.185.1at 180.664 kb on + strand, within Xcc-8004.185.1at 180.665 kb on - strand, within Xcc-8004.185.1at 180.807 kb on + strand, within Xcc-8004.185.1at 181.166 kb on - strandat 181.294 kb on + strandat 181.294 kb on + strandat 181.295 kb on - strandat 181.387 kb on + strandat 181.388 kb on - strandat 181.400 kb on - strandat 181.400 kb on - strandat 181.504 kb on + strandat 181.504 kb on + strandat 181.504 kb on + strandat 181.505 kb on - strandat 181.505 kb on - strandat 181.629 kb on + strandat 181.629 kb on + strandat 181.629 kb on + strandat 181.629 kb on + strandat 181.629 kb on + strandat 181.629 kb on + strandat 181.630 kb on - strandat 181.630 kb on - strandat 181.630 kb on - strandat 181.630 kb on - strandat 181.630 kb on - strandat 181.630 kb on - strandat 181.630 kb on - strandat 181.681 kb on + strandat 181.682 kb on - strandat 181.795 kb on - strand, within Xcc-8004.186.1at 181.957 kb on + strand, within Xcc-8004.186.1at 181.957 kb on + strand, within Xcc-8004.186.1at 181.957 kb on + strand, within Xcc-8004.186.1at 181.970 kb on + strand, within Xcc-8004.186.1at 181.971 kb on - strand, within Xcc-8004.186.1at 182.061 kb on + strand, within Xcc-8004.186.1at 182.062 kb on - strand, within Xcc-8004.186.1at 182.067 kb on + strand, within Xcc-8004.186.1at 182.067 kb on + strand, within Xcc-8004.186.1at 182.068 kb on - strand, within Xcc-8004.186.1at 182.068 kb on - strand, within Xcc-8004.186.1at 182.068 kb on - strand, within Xcc-8004.186.1at 182.251 kb on - strand, within Xcc-8004.186.1at 182.251 kb on - strand, within Xcc-8004.186.1at 182.251 kb on - strand, within Xcc-8004.186.1at 182.251 kb on - strand, within Xcc-8004.186.1at 182.406 kb on + strand, within Xcc-8004.186.1at 182.577 kb on + strand, within Xcc-8004.186.1at 182.577 kb on + strand, within Xcc-8004.186.1at 182.621 kb on + strand, within Xcc-8004.186.1at 182.621 kb on + strand, within Xcc-8004.186.1at 182.631 kb on + strand, within Xcc-8004.186.1at 182.631 kb on + strand, within Xcc-8004.186.1at 182.631 kb on + strand, within Xcc-8004.186.1at 182.631 kb on + strand, within Xcc-8004.186.1at 182.632 kb on - strand, within Xcc-8004.186.1at 182.632 kb on - strand, within Xcc-8004.186.1at 182.632 kb on - strand, within Xcc-8004.186.1at 182.632 kb on - strand, within Xcc-8004.186.1at 182.632 kb on - strand, within Xcc-8004.186.1at 182.742 kb on + strand, within Xcc-8004.186.1at 182.743 kb on - strand, within Xcc-8004.186.1at 182.751 kb on + strand, within Xcc-8004.186.1at 182.751 kb on + strand, within Xcc-8004.186.1at 182.943 kb on + strand, within Xcc-8004.186.1at 182.943 kb on + strand, within Xcc-8004.186.1at 182.944 kb on - strand, within Xcc-8004.186.1at 182.982 kb on + strand, within Xcc-8004.186.1at 182.982 kb on + strand, within Xcc-8004.186.1at 182.982 kb on + strand, within Xcc-8004.186.1at 182.982 kb on + strand, within Xcc-8004.186.1at 182.983 kb on - strand, within Xcc-8004.186.1at 182.983 kb on - strand, within Xcc-8004.186.1at 182.983 kb on - strand, within Xcc-8004.186.1at 182.983 kb on - strand, within Xcc-8004.186.1at 182.983 kb on - strand, within Xcc-8004.186.1at 183.003 kb on + strand, within Xcc-8004.186.1at 183.045 kb on + strand, within Xcc-8004.186.1at 183.045 kb on + strand, within Xcc-8004.186.1at 183.045 kb on + strand, within Xcc-8004.186.1at 183.045 kb on + strand, within Xcc-8004.186.1at 183.046 kb on - strand, within Xcc-8004.186.1at 183.046 kb on - strand, within Xcc-8004.186.1at 183.046 kb on - strand, within Xcc-8004.186.1at 183.046 kb on - strand, within Xcc-8004.186.1at 183.046 kb on - strand, within Xcc-8004.186.1at 183.051 kb on + strand, within Xcc-8004.186.1at 183.340 kb on - strand, within Xcc-8004.186.1at 183.474 kb on + strandat 183.474 kb on + strandat 183.474 kb on + strandat 183.474 kb on + strandat 183.561 kb on + strandat 183.561 kb on + strandat 183.738 kb on + strandat 183.739 kb on - strandat 183.739 kb on - strandat 183.739 kb on - strandat 183.753 kb on - strandat 183.753 kb on - strandat 183.778 kb on - strandat 183.778 kb on - strandat 183.778 kb on - strandat 183.778 kb on - strandat 183.781 kb on - strandat 184.354 kb on + strandat 184.355 kb on - strandat 184.355 kb on - strandat 184.427 kb on - strand, within Xcc-8004.189.1at 184.603 kb on + strandat 184.616 kb on - strandat 184.622 kb on + strandat 184.623 kb on - strandat 184.623 kb on - strandat 184.670 kb on + strandat 184.670 kb on + strandat 184.671 kb on - strandat 184.671 kb on - strandat 184.671 kb on - strandat 184.678 kb on + strandat 184.678 kb on + strandat 184.678 kb on + strandat 184.678 kb on + strandat 184.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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180,664 + Xcc-8004.185.1 0.75 +0.7
180,664 + Xcc-8004.185.1 0.75 +1.3
180,665 - Xcc-8004.185.1 0.75 +0.0
180,807 + Xcc-8004.185.1 0.79 +0.3
181,166 - -1.0
181,294 + +0.2
181,294 + -0.3
181,295 - -1.6
181,387 + -0.1
181,388 - +0.6
181,400 - -0.0
181,400 - +0.3
181,504 + -0.3
181,504 + -1.3
181,504 + -0.1
181,505 - -1.8
181,505 - -1.6
181,629 + -2.0
181,629 + +1.7
181,629 + -0.4
181,629 + -3.4
181,629 + -0.3
181,629 + -1.8
181,630 - -3.1
181,630 - +0.5
181,630 - -1.9
181,630 - -2.6
181,630 - -1.8
181,630 - -3.8
181,630 - -0.9
181,681 + -1.9
181,682 - -1.1
181,795 - Xcc-8004.186.1 0.14 -1.4
181,957 + Xcc-8004.186.1 0.21 -0.9
181,957 + Xcc-8004.186.1 0.21 -2.4
181,957 + Xcc-8004.186.1 0.21 -2.3
181,970 + Xcc-8004.186.1 0.22 -2.9
181,971 - Xcc-8004.186.1 0.22 -2.0
182,061 + Xcc-8004.186.1 0.26 -2.8
182,062 - Xcc-8004.186.1 0.26 -1.8
182,067 + Xcc-8004.186.1 0.26 -2.8
182,067 + Xcc-8004.186.1 0.26 -1.9
182,068 - Xcc-8004.186.1 0.26 -2.3
182,068 - Xcc-8004.186.1 0.26 -1.8
182,068 - Xcc-8004.186.1 0.26 -1.6
182,251 - Xcc-8004.186.1 0.34 -2.5
182,251 - Xcc-8004.186.1 0.34 -1.8
182,251 - Xcc-8004.186.1 0.34 -1.3
182,251 - Xcc-8004.186.1 0.34 +0.1
182,406 + Xcc-8004.186.1 0.42 -0.1
182,577 + Xcc-8004.186.1 0.49 -0.5
182,577 + Xcc-8004.186.1 0.49 -3.3
182,621 + Xcc-8004.186.1 0.51 -2.4
182,621 + Xcc-8004.186.1 0.51 -0.9
182,631 + Xcc-8004.186.1 0.52 -1.1
182,631 + Xcc-8004.186.1 0.52 -1.4
182,631 + Xcc-8004.186.1 0.52 -2.8
182,631 + Xcc-8004.186.1 0.52 -1.2
182,632 - Xcc-8004.186.1 0.52 -2.2
182,632 - Xcc-8004.186.1 0.52 -2.2
182,632 - Xcc-8004.186.1 0.52 -2.1
182,632 - Xcc-8004.186.1 0.52 -1.3
182,632 - Xcc-8004.186.1 0.52 -0.9
182,742 + Xcc-8004.186.1 0.57 -3.1
182,743 - Xcc-8004.186.1 0.57 -0.7
182,751 + Xcc-8004.186.1 0.57 -2.2
182,751 + Xcc-8004.186.1 0.57 -3.7
182,943 + Xcc-8004.186.1 0.66 -2.7
182,943 + Xcc-8004.186.1 0.66 -2.4
182,944 - Xcc-8004.186.1 0.66 -2.8
182,982 + Xcc-8004.186.1 0.68 -1.5
182,982 + Xcc-8004.186.1 0.68 +1.3
182,982 + Xcc-8004.186.1 0.68 -2.6
182,982 + Xcc-8004.186.1 0.68 -0.5
182,983 - Xcc-8004.186.1 0.68 -2.0
182,983 - Xcc-8004.186.1 0.68 -1.3
182,983 - Xcc-8004.186.1 0.68 -1.4
182,983 - Xcc-8004.186.1 0.68 -1.6
182,983 - Xcc-8004.186.1 0.68 -2.7
183,003 + Xcc-8004.186.1 0.69 -0.6
183,045 + Xcc-8004.186.1 0.71 -4.0
183,045 + Xcc-8004.186.1 0.71 -1.3
183,045 + Xcc-8004.186.1 0.71 -0.8
183,045 + Xcc-8004.186.1 0.71 +0.1
183,046 - Xcc-8004.186.1 0.71 -3.0
183,046 - Xcc-8004.186.1 0.71 -2.9
183,046 - Xcc-8004.186.1 0.71 +0.6
183,046 - Xcc-8004.186.1 0.71 -3.4
183,046 - Xcc-8004.186.1 0.71 -1.9
183,051 + Xcc-8004.186.1 0.71 -2.6
183,340 - Xcc-8004.186.1 0.84 -1.9
183,474 + -2.7
183,474 + -2.2
183,474 + -1.4
183,474 + -0.1
183,561 + -2.6
183,561 + -2.7
183,738 + -0.5
183,739 - +0.8
183,739 - -1.1
183,739 - +0.0
183,753 - +0.5
183,753 - -1.3
183,778 - -1.8
183,778 - -0.3
183,778 - -2.3
183,778 - +0.2
183,781 - -0.1
184,354 + +0.7
184,355 - -0.1
184,355 - -0.1
184,427 - Xcc-8004.189.1 0.45 +0.7
184,603 + +1.7
184,616 - +1.3
184,622 + +1.5
184,623 - +1.3
184,623 - -0.2
184,670 + +0.2
184,670 + -0.6
184,671 - -0.2
184,671 - +0.2
184,671 - -0.0
184,678 + -0.5
184,678 + -0.3
184,678 + -1.8
184,678 + +0.2
184,679 - +0.5

Or see this region's nucleotide sequence