Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.181.1 and Xcc-8004.183.1 are separated by 185 nucleotides Xcc-8004.183.1 and Xcc-8004.184.1 are separated by 261 nucleotides Xcc-8004.184.1 and Xcc-8004.185.1 overlap by 4 nucleotides
Xcc-8004.181.1: Xcc-8004.181.1 - putative; ORF located using Glimmer/Genemark, at 173,580 to 174,251
Xcc-8004.181.1
Xcc-8004.183.1: Xcc-8004.183.1 - FIG01211553: hypothetical protein, at 174,437 to 174,769
Xcc-8004.183.1
Xcc-8004.184.1: Xcc-8004.184.1 - Alpha-amylase (EC 3.2.1.1), at 175,031 to 178,147
Xcc-8004.184.1
Xcc-8004.185.1: Xcc-8004.185.1 - Trehalose synthase (EC 5.4.99.16), at 178,144 to 181,494
Xcc-8004.185.1
Position (kb) 175
176
177
178
179 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 174.037 kb on + strand, within Xcc-8004.181.1 at 174.057 kb on + strand, within Xcc-8004.181.1 at 174.058 kb on - strand, within Xcc-8004.181.1 at 174.058 kb on - strand, within Xcc-8004.181.1 at 174.100 kb on + strand, within Xcc-8004.181.1 at 174.111 kb on + strand, within Xcc-8004.181.1 at 174.132 kb on - strand, within Xcc-8004.181.1 at 174.146 kb on + strand, within Xcc-8004.181.1 at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.278 kb on - strand at 174.278 kb on - strand at 174.278 kb on - strand at 174.288 kb on - strand at 174.428 kb on + strand at 174.428 kb on + strand at 174.429 kb on - strand at 174.429 kb on - strand at 174.429 kb on - strand at 174.471 kb on + strand, within Xcc-8004.183.1 at 174.471 kb on + strand, within Xcc-8004.183.1 at 174.471 kb on + strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.643 kb on - strand, within Xcc-8004.183.1 at 174.796 kb on + strand at 174.796 kb on + strand at 174.797 kb on - strand at 174.812 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.832 kb on - strand at 174.832 kb on - strand at 174.832 kb on - strand at 174.832 kb on - strand at 174.837 kb on + strand at 174.838 kb on - strand at 174.883 kb on + strand at 174.884 kb on - strand at 175.044 kb on + strand at 175.044 kb on + strand at 175.044 kb on + strand at 175.044 kb on + strand at 175.045 kb on - strand at 175.045 kb on - strand at 175.045 kb on - strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.394 kb on + strand, within Xcc-8004.184.1 at 175.395 kb on - strand, within Xcc-8004.184.1 at 175.482 kb on + strand, within Xcc-8004.184.1 at 175.483 kb on - strand, within Xcc-8004.184.1 at 175.483 kb on - strand, within Xcc-8004.184.1 at 176.062 kb on + strand, within Xcc-8004.184.1 at 176.062 kb on + strand, within Xcc-8004.184.1 at 176.063 kb on - strand, within Xcc-8004.184.1 at 176.063 kb on - strand, within Xcc-8004.184.1 at 176.063 kb on - strand, within Xcc-8004.184.1 at 176.063 kb on - strand, within Xcc-8004.184.1 at 176.063 kb on - strand, within Xcc-8004.184.1 at 176.115 kb on - strand, within Xcc-8004.184.1 at 176.426 kb on + strand, within Xcc-8004.184.1 at 176.427 kb on - strand, within Xcc-8004.184.1 at 176.464 kb on + strand, within Xcc-8004.184.1 at 176.464 kb on + strand, within Xcc-8004.184.1 at 176.711 kb on + strand, within Xcc-8004.184.1 at 176.769 kb on - strand, within Xcc-8004.184.1 at 176.769 kb on - strand, within Xcc-8004.184.1 at 176.769 kb on - strand, within Xcc-8004.184.1 at 176.848 kb on + strand, within Xcc-8004.184.1 at 176.876 kb on + strand, within Xcc-8004.184.1 at 176.876 kb on + strand, within Xcc-8004.184.1 at 176.876 kb on + strand, within Xcc-8004.184.1 at 176.877 kb on - strand, within Xcc-8004.184.1 at 176.877 kb on - strand, within Xcc-8004.184.1 at 176.877 kb on - strand, within Xcc-8004.184.1 at 176.877 kb on - strand, within Xcc-8004.184.1 at 176.877 kb on - strand, within Xcc-8004.184.1 at 177.194 kb on + strand, within Xcc-8004.184.1 at 177.425 kb on + strand, within Xcc-8004.184.1 at 177.425 kb on + strand, within Xcc-8004.184.1 at 177.425 kb on + strand, within Xcc-8004.184.1 at 177.426 kb on - strand, within Xcc-8004.184.1 at 177.426 kb on - strand, within Xcc-8004.184.1 at 177.458 kb on + strand, within Xcc-8004.184.1 at 177.459 kb on - strand, within Xcc-8004.184.1 at 177.459 kb on - strand, within Xcc-8004.184.1 at 177.459 kb on - strand, within Xcc-8004.184.1 at 177.464 kb on + strand, within Xcc-8004.184.1 at 177.464 kb on + strand, within Xcc-8004.184.1 at 177.464 kb on + strand, within Xcc-8004.184.1 at 177.465 kb on - strand, within Xcc-8004.184.1 at 177.465 kb on - strand, within Xcc-8004.184.1 at 177.465 kb on - strand, within Xcc-8004.184.1 at 177.504 kb on - strand, within Xcc-8004.184.1 at 177.566 kb on - strand, within Xcc-8004.184.1 at 177.566 kb on - strand, within Xcc-8004.184.1 at 177.566 kb on - strand, within Xcc-8004.184.1 at 177.665 kb on + strand, within Xcc-8004.184.1 at 177.665 kb on + strand, within Xcc-8004.184.1 at 177.665 kb on + strand, within Xcc-8004.184.1 at 177.665 kb on + strand, within Xcc-8004.184.1 at 177.665 kb on + strand, within Xcc-8004.184.1 at 177.666 kb on - strand, within Xcc-8004.184.1 at 177.666 kb on - strand, within Xcc-8004.184.1 at 177.666 kb on - strand, within Xcc-8004.184.1 at 177.666 kb on - strand, within Xcc-8004.184.1 at 177.666 kb on - strand, within Xcc-8004.184.1 at 177.719 kb on + strand, within Xcc-8004.184.1 at 177.720 kb on - strand, within Xcc-8004.184.1 at 177.720 kb on - strand, within Xcc-8004.184.1 at 177.720 kb on - strand, within Xcc-8004.184.1 at 177.720 kb on - strand, within Xcc-8004.184.1 at 177.738 kb on - strand, within Xcc-8004.184.1 at 177.854 kb on + strand at 177.855 kb on - strand at 177.855 kb on - strand at 177.881 kb on + strand at 177.882 kb on - strand at 177.882 kb on - strand at 177.882 kb on - strand at 178.117 kb on - strand at 178.210 kb on + strand at 178.211 kb on - strand at 178.211 kb on - strand at 178.228 kb on + strand at 178.228 kb on + strand at 178.228 kb on + strand at 178.228 kb on + strand at 178.229 kb on - strand at 178.309 kb on + strand at 178.310 kb on - strand at 178.354 kb on + strand at 178.354 kb on + strand at 178.396 kb on + strand at 178.396 kb on + strand at 178.397 kb on - strand at 178.397 kb on - strand at 178.397 kb on - strand at 178.397 kb on - strand at 178.397 kb on - strand at 178.574 kb on - strand, within Xcc-8004.185.1 at 178.574 kb on - strand, within Xcc-8004.185.1 at 178.574 kb on - strand, within Xcc-8004.185.1 at 178.574 kb on - strand, within Xcc-8004.185.1 at 178.600 kb on + strand, within Xcc-8004.185.1 at 178.600 kb on + strand, within Xcc-8004.185.1 at 178.672 kb on + strand, within Xcc-8004.185.1 at 178.672 kb on + strand, within Xcc-8004.185.1 at 178.673 kb on - strand, within Xcc-8004.185.1 at 178.673 kb on - strand, within Xcc-8004.185.1 at 178.690 kb on + strand, within Xcc-8004.185.1 at 178.690 kb on + strand, within Xcc-8004.185.1 at 178.690 kb on + strand, within Xcc-8004.185.1 at 178.808 kb on - strand, within Xcc-8004.185.1 at 178.808 kb on - strand, within Xcc-8004.185.1 at 178.808 kb on - strand, within Xcc-8004.185.1 at 178.808 kb on - strand, within Xcc-8004.185.1 at 178.954 kb on + strand, within Xcc-8004.185.1 at 178.954 kb on + strand, within Xcc-8004.185.1 at 178.955 kb on - strand, within Xcc-8004.185.1 at 178.955 kb on - strand, within Xcc-8004.185.1 at 178.955 kb on - strand, within Xcc-8004.185.1 at 178.955 kb on - strand, within Xcc-8004.185.1 at 178.955 kb on - strand, within Xcc-8004.185.1 at 179.017 kb on + strand, within Xcc-8004.185.1 at 179.017 kb on + strand, within Xcc-8004.185.1 at 179.017 kb on + strand, within Xcc-8004.185.1 at 179.017 kb on + strand, within Xcc-8004.185.1 at 179.017 kb on + strand, within Xcc-8004.185.1 at 179.018 kb on - strand, within Xcc-8004.185.1 at 179.018 kb on - strand, within Xcc-8004.185.1 at 179.018 kb on - strand, within Xcc-8004.185.1 at 179.018 kb on - strand, within Xcc-8004.185.1 at 179.018 kb on - strand, within Xcc-8004.185.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 174,037 + Xcc-8004.181.1 0.68 +0.8 174,057 + Xcc-8004.181.1 0.71 +1.3 174,058 - Xcc-8004.181.1 0.71 -0.7 174,058 - Xcc-8004.181.1 0.71 +0.9 174,100 + Xcc-8004.181.1 0.77 +0.5 174,111 + Xcc-8004.181.1 0.79 +0.5 174,132 - Xcc-8004.181.1 0.82 -0.2 174,146 + Xcc-8004.181.1 0.84 -0.7 174,277 + -2.0 174,277 + +0.1 174,277 + -0.8 174,277 + -0.4 174,277 + -0.2 174,277 + -0.7 174,277 + -0.8 174,277 + +0.4 174,278 - +1.0 174,278 - +1.1 174,278 - -0.2 174,288 - +1.0 174,428 + +0.6 174,428 + +1.1 174,429 - -2.1 174,429 - -0.3 174,429 - -0.0 174,471 + Xcc-8004.183.1 0.10 +0.4 174,471 + Xcc-8004.183.1 0.10 +0.5 174,471 + Xcc-8004.183.1 0.10 +0.5 174,472 - Xcc-8004.183.1 0.11 -0.6 174,472 - Xcc-8004.183.1 0.11 -0.1 174,472 - Xcc-8004.183.1 0.11 +0.7 174,472 - Xcc-8004.183.1 0.11 -0.6 174,472 - Xcc-8004.183.1 0.11 +0.1 174,642 + Xcc-8004.183.1 0.62 +0.6 174,642 + Xcc-8004.183.1 0.62 -1.0 174,642 + Xcc-8004.183.1 0.62 +2.7 174,642 + Xcc-8004.183.1 0.62 -0.2 174,643 - Xcc-8004.183.1 0.62 +0.8 174,796 + -0.5 174,796 + -0.8 174,797 - -0.6 174,812 + +0.5 174,831 + -0.6 174,831 + -1.2 174,831 + +0.1 174,831 + -1.0 174,831 + -1.2 174,831 + -0.1 174,832 - +2.0 174,832 - +0.3 174,832 - -0.4 174,832 - -0.3 174,837 + -1.5 174,838 - +1.0 174,883 + -0.2 174,884 - +0.1 175,044 + -0.8 175,044 + -1.3 175,044 + -0.4 175,044 + -0.6 175,045 - -1.0 175,045 - -0.1 175,045 - -0.5 175,121 + -1.5 175,121 + -1.9 175,121 + -0.1 175,121 + -2.4 175,121 + +0.1 175,121 + +0.0 175,121 + -0.4 175,122 - -0.1 175,122 - -0.6 175,122 - +0.4 175,122 - +0.3 175,122 - +0.2 175,125 + -3.9 175,125 + -2.2 175,125 + -0.9 175,125 + -1.7 175,125 + -1.0 175,125 + -0.9 175,125 + -1.6 175,126 - -2.1 175,126 - -2.0 175,126 - -0.9 175,126 - -0.2 175,126 - -0.4 175,126 - +1.2 175,126 - -2.8 175,126 - -1.6 175,126 - +0.2 175,126 - -1.3 175,126 - -1.0 175,126 - -1.4 175,394 + Xcc-8004.184.1 0.12 -0.8 175,395 - Xcc-8004.184.1 0.12 -0.6 175,482 + Xcc-8004.184.1 0.14 -0.7 175,483 - Xcc-8004.184.1 0.15 -1.3 175,483 - Xcc-8004.184.1 0.15 -3.1 176,062 + Xcc-8004.184.1 0.33 -1.1 176,062 + Xcc-8004.184.1 0.33 -0.8 176,063 - Xcc-8004.184.1 0.33 -0.4 176,063 - Xcc-8004.184.1 0.33 -0.6 176,063 - Xcc-8004.184.1 0.33 -0.1 176,063 - Xcc-8004.184.1 0.33 -1.2 176,063 - Xcc-8004.184.1 0.33 -1.3 176,115 - Xcc-8004.184.1 0.35 -0.7 176,426 + Xcc-8004.184.1 0.45 -1.8 176,427 - Xcc-8004.184.1 0.45 -0.8 176,464 + Xcc-8004.184.1 0.46 -2.3 176,464 + Xcc-8004.184.1 0.46 -0.9 176,711 + Xcc-8004.184.1 0.54 -1.1 176,769 - Xcc-8004.184.1 0.56 -0.2 176,769 - Xcc-8004.184.1 0.56 +0.0 176,769 - Xcc-8004.184.1 0.56 -1.2 176,848 + Xcc-8004.184.1 0.58 -2.8 176,876 + Xcc-8004.184.1 0.59 -1.6 176,876 + Xcc-8004.184.1 0.59 -1.8 176,876 + Xcc-8004.184.1 0.59 -3.1 176,877 - Xcc-8004.184.1 0.59 +0.1 176,877 - Xcc-8004.184.1 0.59 -0.0 176,877 - Xcc-8004.184.1 0.59 +0.5 176,877 - Xcc-8004.184.1 0.59 +0.2 176,877 - Xcc-8004.184.1 0.59 -0.6 177,194 + Xcc-8004.184.1 0.69 -2.8 177,425 + Xcc-8004.184.1 0.77 -3.3 177,425 + Xcc-8004.184.1 0.77 -2.4 177,425 + Xcc-8004.184.1 0.77 -0.6 177,426 - Xcc-8004.184.1 0.77 -1.5 177,426 - Xcc-8004.184.1 0.77 -0.8 177,458 + Xcc-8004.184.1 0.78 -0.8 177,459 - Xcc-8004.184.1 0.78 -1.6 177,459 - Xcc-8004.184.1 0.78 -2.8 177,459 - Xcc-8004.184.1 0.78 -2.2 177,464 + Xcc-8004.184.1 0.78 -3.4 177,464 + Xcc-8004.184.1 0.78 -0.2 177,464 + Xcc-8004.184.1 0.78 -2.9 177,465 - Xcc-8004.184.1 0.78 +0.4 177,465 - Xcc-8004.184.1 0.78 -2.5 177,465 - Xcc-8004.184.1 0.78 -1.6 177,504 - Xcc-8004.184.1 0.79 -2.0 177,566 - Xcc-8004.184.1 0.81 -0.1 177,566 - Xcc-8004.184.1 0.81 -2.4 177,566 - Xcc-8004.184.1 0.81 +0.3 177,665 + Xcc-8004.184.1 0.85 -3.4 177,665 + Xcc-8004.184.1 0.85 -0.6 177,665 + Xcc-8004.184.1 0.85 -3.1 177,665 + Xcc-8004.184.1 0.85 -1.8 177,665 + Xcc-8004.184.1 0.85 -2.7 177,666 - Xcc-8004.184.1 0.85 -1.5 177,666 - Xcc-8004.184.1 0.85 -1.4 177,666 - Xcc-8004.184.1 0.85 +0.9 177,666 - Xcc-8004.184.1 0.85 -0.4 177,666 - Xcc-8004.184.1 0.85 -1.9 177,719 + Xcc-8004.184.1 0.86 -0.9 177,720 - Xcc-8004.184.1 0.86 -0.5 177,720 - Xcc-8004.184.1 0.86 -0.5 177,720 - Xcc-8004.184.1 0.86 -0.6 177,720 - Xcc-8004.184.1 0.86 -0.5 177,738 - Xcc-8004.184.1 0.87 -0.3 177,854 + -1.9 177,855 - +0.8 177,855 - -0.8 177,881 + -0.3 177,882 - -1.0 177,882 - -0.9 177,882 - -0.3 178,117 - -2.3 178,210 + -1.4 178,211 - -0.5 178,211 - +0.2 178,228 + -0.9 178,228 + +0.7 178,228 + -0.6 178,228 + -1.0 178,229 - +0.6 178,309 + +0.5 178,310 - +1.6 178,354 + +0.3 178,354 + +1.0 178,396 + -0.9 178,396 + +0.0 178,397 - -0.9 178,397 - -2.4 178,397 - +0.6 178,397 - +0.3 178,397 - +0.5 178,574 - Xcc-8004.185.1 0.13 +0.1 178,574 - Xcc-8004.185.1 0.13 +0.5 178,574 - Xcc-8004.185.1 0.13 +1.6 178,574 - Xcc-8004.185.1 0.13 +1.6 178,600 + Xcc-8004.185.1 0.14 -1.1 178,600 + Xcc-8004.185.1 0.14 +1.4 178,672 + Xcc-8004.185.1 0.16 -0.8 178,672 + Xcc-8004.185.1 0.16 -0.8 178,673 - Xcc-8004.185.1 0.16 -0.4 178,673 - Xcc-8004.185.1 0.16 +0.6 178,690 + Xcc-8004.185.1 0.16 -0.9 178,690 + Xcc-8004.185.1 0.16 -0.7 178,690 + Xcc-8004.185.1 0.16 -1.2 178,808 - Xcc-8004.185.1 0.20 -0.8 178,808 - Xcc-8004.185.1 0.20 -0.5 178,808 - Xcc-8004.185.1 0.20 -0.9 178,808 - Xcc-8004.185.1 0.20 -2.3 178,954 + Xcc-8004.185.1 0.24 -0.8 178,954 + Xcc-8004.185.1 0.24 -0.2 178,955 - Xcc-8004.185.1 0.24 -1.8 178,955 - Xcc-8004.185.1 0.24 -1.9 178,955 - Xcc-8004.185.1 0.24 -0.4 178,955 - Xcc-8004.185.1 0.24 -0.9 178,955 - Xcc-8004.185.1 0.24 -0.4 179,017 + Xcc-8004.185.1 0.26 -1.3 179,017 + Xcc-8004.185.1 0.26 +1.4 179,017 + Xcc-8004.185.1 0.26 -0.3 179,017 + Xcc-8004.185.1 0.26 -0.6 179,017 + Xcc-8004.185.1 0.26 +0.1 179,018 - Xcc-8004.185.1 0.26 -0.2 179,018 - Xcc-8004.185.1 0.26 +0.8 179,018 - Xcc-8004.185.1 0.26 -0.7 179,018 - Xcc-8004.185.1 0.26 +0.2 179,018 - Xcc-8004.185.1 0.26 +0.8
Or see this region's nucleotide sequence