Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1727.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1726.1 and Xcc-8004.1727.1 are separated by 114 nucleotidesXcc-8004.1727.1 and Xcc-8004.1728.1 overlap by 17 nucleotidesXcc-8004.1728.1 and Xcc-8004.1729.1 overlap by 4 nucleotides Xcc-8004.1726.1: Xcc-8004.1726.1 - Phenazine biosynthesis protein PhzF like, at 1,655,436 to 1,656,314 Xcc-8004.1726.1 Xcc-8004.1727.1: Xcc-8004.1727.1 - Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20), at 1,656,429 to 1,659,119 Xcc-8004.1727.1 Xcc-8004.1728.1: Xcc-8004.1728.1 - FIG01210339: hypothetical protein, at 1,659,103 to 1,659,561 Xcc-8004.1728.1 Xcc-8004.1729.1: Xcc-8004.1729.1 - FIG01210076: hypothetical protein, at 1,659,558 to 1,660,913 Xcc-8004.1729.1 Position (kb) 1656 1657 1658 1659 1660Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1655.437 kb on + strandat 1655.487 kb on + strandat 1655.487 kb on + strandat 1655.487 kb on + strandat 1655.487 kb on + strandat 1655.487 kb on + strandat 1655.488 kb on - strandat 1655.488 kb on - strandat 1655.488 kb on - strandat 1655.488 kb on - strandat 1655.560 kb on + strand, within Xcc-8004.1726.1at 1655.561 kb on - strand, within Xcc-8004.1726.1at 1655.561 kb on - strand, within Xcc-8004.1726.1at 1655.713 kb on + strand, within Xcc-8004.1726.1at 1655.713 kb on + strand, within Xcc-8004.1726.1at 1655.713 kb on + strand, within Xcc-8004.1726.1at 1655.714 kb on - strand, within Xcc-8004.1726.1at 1655.714 kb on - strand, within Xcc-8004.1726.1at 1655.714 kb on - strand, within Xcc-8004.1726.1at 1655.714 kb on - strand, within Xcc-8004.1726.1at 1655.976 kb on + strand, within Xcc-8004.1726.1at 1655.976 kb on + strand, within Xcc-8004.1726.1at 1655.976 kb on + strand, within Xcc-8004.1726.1at 1655.976 kb on + strand, within Xcc-8004.1726.1at 1655.976 kb on + strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1655.977 kb on - strand, within Xcc-8004.1726.1at 1656.013 kb on + strand, within Xcc-8004.1726.1at 1656.133 kb on + strand, within Xcc-8004.1726.1at 1656.299 kb on - strandat 1656.327 kb on + strandat 1656.508 kb on + strandat 1656.508 kb on + strandat 1656.508 kb on + strandat 1656.508 kb on + strandat 1656.508 kb on + strandat 1656.508 kb on + strandat 1656.508 kb on + strandat 1656.508 kb on + strandat 1656.508 kb on + strandat 1656.527 kb on + strandat 1658.037 kb on + strand, within Xcc-8004.1727.1at 1658.037 kb on + strand, within Xcc-8004.1727.1at 1658.043 kb on + strand, within Xcc-8004.1727.1at 1658.571 kb on + strand, within Xcc-8004.1727.1at 1658.571 kb on + strand, within Xcc-8004.1727.1at 1658.571 kb on + strand, within Xcc-8004.1727.1at 1658.849 kb on + strand, within Xcc-8004.1727.1at 1658.871 kb on + strandat 1659.216 kb on - strand, within Xcc-8004.1728.1at 1659.379 kb on + strand, within Xcc-8004.1728.1at 1659.379 kb on + strand, within Xcc-8004.1728.1at 1659.379 kb on + strand, within Xcc-8004.1728.1at 1659.379 kb on + strand, within Xcc-8004.1728.1at 1659.505 kb on + strand, within Xcc-8004.1728.1at 1659.557 kb on + strandat 1659.557 kb on + strandat 1659.557 kb on + strandat 1659.557 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,655,437 + -1.2
1,655,487 + -0.8
1,655,487 + +1.1
1,655,487 + +0.3
1,655,487 + +0.6
1,655,487 + +0.6
1,655,488 - +0.8
1,655,488 - +0.1
1,655,488 - -0.1
1,655,488 - -0.3
1,655,560 + Xcc-8004.1726.1 0.14 +0.4
1,655,561 - Xcc-8004.1726.1 0.14 +1.5
1,655,561 - Xcc-8004.1726.1 0.14 +0.5
1,655,713 + Xcc-8004.1726.1 0.32 +0.9
1,655,713 + Xcc-8004.1726.1 0.32 +1.0
1,655,713 + Xcc-8004.1726.1 0.32 +0.3
1,655,714 - Xcc-8004.1726.1 0.32 -0.6
1,655,714 - Xcc-8004.1726.1 0.32 +0.6
1,655,714 - Xcc-8004.1726.1 0.32 +1.6
1,655,714 - Xcc-8004.1726.1 0.32 -0.9
1,655,976 + Xcc-8004.1726.1 0.61 +0.7
1,655,976 + Xcc-8004.1726.1 0.61 +0.2
1,655,976 + Xcc-8004.1726.1 0.61 +1.6
1,655,976 + Xcc-8004.1726.1 0.61 -0.2
1,655,976 + Xcc-8004.1726.1 0.61 +0.1
1,655,977 - Xcc-8004.1726.1 0.62 +0.9
1,655,977 - Xcc-8004.1726.1 0.62 +0.2
1,655,977 - Xcc-8004.1726.1 0.62 +1.1
1,655,977 - Xcc-8004.1726.1 0.62 +0.4
1,655,977 - Xcc-8004.1726.1 0.62 +0.1
1,655,977 - Xcc-8004.1726.1 0.62 +0.5
1,655,977 - Xcc-8004.1726.1 0.62 +0.4
1,655,977 - Xcc-8004.1726.1 0.62 +0.1
1,656,013 + Xcc-8004.1726.1 0.66 +0.7
1,656,133 + Xcc-8004.1726.1 0.79 -0.2
1,656,299 - -0.3
1,656,327 + -0.5
1,656,508 + -0.8
1,656,508 + -0.0
1,656,508 + -0.9
1,656,508 + -0.2
1,656,508 + +0.0
1,656,508 + +0.0
1,656,508 + +0.0
1,656,508 + -1.4
1,656,508 + -1.0
1,656,527 + -2.3
1,658,037 + Xcc-8004.1727.1 0.60 -2.5
1,658,037 + Xcc-8004.1727.1 0.60 -2.5
1,658,043 + Xcc-8004.1727.1 0.60 -2.2
1,658,571 + Xcc-8004.1727.1 0.80 -2.0
1,658,571 + Xcc-8004.1727.1 0.80 -2.7
1,658,571 + Xcc-8004.1727.1 0.80 -3.2
1,658,849 + Xcc-8004.1727.1 0.90 -1.2
1,658,871 + -3.8
1,659,216 - Xcc-8004.1728.1 0.25 +0.5
1,659,379 + Xcc-8004.1728.1 0.60 +0.9
1,659,379 + Xcc-8004.1728.1 0.60 -0.7
1,659,379 + Xcc-8004.1728.1 0.60 +0.4
1,659,379 + Xcc-8004.1728.1 0.60 +0.7
1,659,505 + Xcc-8004.1728.1 0.88 +0.4
1,659,557 + +0.0
1,659,557 + -0.1
1,659,557 + +0.2
1,659,557 + +1.4

Or see this region's nucleotide sequence