Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1710.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,639,626	-				+0.9
1,640,051	+				+0.6
1,640,052	-				-0.2
1,640,138	-				+0.8
1,640,247	+				+1.4
1,640,247	+				-0.4
1,640,735	+		Xcc-8004.1710.1	0.15	-2.5
1,640,735	+		Xcc-8004.1710.1	0.15	-0.5
1,640,735	+		Xcc-8004.1710.1	0.15	-1.8
1,640,735	+		Xcc-8004.1710.1	0.15	-0.4
1,640,788	+		Xcc-8004.1710.1	0.21	-3.4
1,640,788	+		Xcc-8004.1710.1	0.21	-1.9
1,640,789	-		Xcc-8004.1710.1	0.21	-1.1
1,640,874	+		Xcc-8004.1710.1	0.30	+0.2
1,640,874	+		Xcc-8004.1710.1	0.30	-1.3
1,640,874	+		Xcc-8004.1710.1	0.30	-1.9
1,640,875	-		Xcc-8004.1710.1	0.30	-0.5
1,640,875	-		Xcc-8004.1710.1	0.30	-1.7
1,640,875	-		Xcc-8004.1710.1	0.30	+0.0
1,641,009	+		Xcc-8004.1710.1	0.45	-0.2
1,641,009	+		Xcc-8004.1710.1	0.45	-2.5
1,641,525	+				-1.1
1,641,526	-				+0.2
1,641,526	-				-2.0
1,641,605	+		Xcc-8004.1711.1	0.17	-0.2
1,641,605	+		Xcc-8004.1711.1	0.17	-0.4
1,641,605	+		Xcc-8004.1711.1	0.17	+0.4
1,641,605	+		Xcc-8004.1711.1	0.17	+0.2
1,641,605	+		Xcc-8004.1711.1	0.17	-1.7
1,641,605	+		Xcc-8004.1711.1	0.17	-1.7
1,641,606	-		Xcc-8004.1711.1	0.17	-1.3
1,641,606	-		Xcc-8004.1711.1	0.17	-0.7
1,641,606	-		Xcc-8004.1711.1	0.17	-0.4
1,641,606	-		Xcc-8004.1711.1	0.17	-0.2
1,641,810	-		Xcc-8004.1711.1	0.46	+1.1
1,642,018	+		Xcc-8004.1711.1	0.77	+0.5
1,642,018	+		Xcc-8004.1711.1	0.77	+0.4
1,642,018	+		Xcc-8004.1711.1	0.77	-2.4
1,642,018	+		Xcc-8004.1711.1	0.77	+0.4
1,642,018	+		Xcc-8004.1711.1	0.77	-1.8
1,642,018	+		Xcc-8004.1711.1	0.77	-0.3
1,642,018	+		Xcc-8004.1711.1	0.77	-0.5
1,642,018	+		Xcc-8004.1711.1	0.77	-2.2
1,642,018	+		Xcc-8004.1711.1	0.77	-0.0
1,642,019	-		Xcc-8004.1711.1	0.77	-1.3
1,642,019	-		Xcc-8004.1711.1	0.77	-3.2
1,642,019	-		Xcc-8004.1711.1	0.77	-1.1
1,642,019	-		Xcc-8004.1711.1	0.77	-1.5
1,642,019	-		Xcc-8004.1711.1	0.77	-0.6
1,642,019	-		Xcc-8004.1711.1	0.77	-0.8
1,642,019	-		Xcc-8004.1711.1	0.77	-2.1
1,642,019	-		Xcc-8004.1711.1	0.77	-0.4
1,642,019	-		Xcc-8004.1711.1	0.77	-0.8
1,642,019	-		Xcc-8004.1711.1	0.77	+0.4
1,642,019	-		Xcc-8004.1711.1	0.77	+0.6
1,642,191	+				-1.1
1,642,206	+				+0.2
1,642,207	-				+1.3
1,642,207	-				+0.1
1,642,291	-				+0.1
1,642,291	-				-0.3
1,642,409	+				-2.9
1,642,409	+				-1.1
1,642,409	+				+0.1
1,642,409	+				+0.7
1,642,409	+				-0.7
1,642,409	+				+0.6
1,642,409	+				-0.0
1,642,409	+				-0.0
1,642,409	+				-2.0
1,642,409	+				+0.5
1,642,409	+				+0.9
1,642,410	-				+1.1
1,642,410	-				-1.0
1,642,410	-				+1.0
1,642,410	-				-0.3
1,642,410	-				-0.7
1,642,410	-				-2.1
1,642,410	-				-1.7
1,642,410	-				+0.1
1,642,410	-				+0.5
1,642,411	+				-0.5
1,642,411	+				-0.7
1,642,411	+				-0.2
1,642,411	+				+0.4
1,642,412	-				+1.5
1,642,412	-				+0.2
1,642,412	-				-0.3
1,642,412	-				-0.4
1,642,412	-				+1.4
1,642,412	-				+0.2
1,642,428	+				-0.3
1,642,429	-				+0.6
1,642,479	+				-0.2
1,642,479	+				+0.0
1,642,479	+				-0.5