Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1680.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1678.1 and Xcc-8004.1679.1 overlap by 4 nucleotidesXcc-8004.1679.1 and Xcc-8004.1680.1 are separated by 17 nucleotidesXcc-8004.1680.1 and Xcc-8004.1681.1 overlap by 4 nucleotides Xcc-8004.1678.1: Xcc-8004.1678.1 - Putative permease often clustered with de novo purine synthesis, at 1,612,786 to 1,613,952 Xcc-8004.1678.1 Xcc-8004.1679.1: Xcc-8004.1679.1 - Chromosomal replication initiator protein DnaA, at 1,613,949 to 1,614,650 Xcc-8004.1679.1 Xcc-8004.1680.1: Xcc-8004.1680.1 - FIG006611: nucleotidyltransferase, at 1,614,668 to 1,615,378 Xcc-8004.1680.1 Xcc-8004.1681.1: Xcc-8004.1681.1 - hypothetical protein, at 1,615,375 to 1,616,412 Xcc-8004.1681.1 Position (kb) 1614 1615 1616Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1613.680 kb on + strand, within Xcc-8004.1678.1at 1613.680 kb on + strand, within Xcc-8004.1678.1at 1613.680 kb on + strand, within Xcc-8004.1678.1at 1613.830 kb on + strand, within Xcc-8004.1678.1at 1613.845 kb on + strandat 1613.863 kb on + strandat 1613.863 kb on + strandat 1613.863 kb on + strandat 1614.725 kb on + strandat 1614.725 kb on + strandat 1614.725 kb on + strandat 1614.725 kb on + strandat 1614.725 kb on + strandat 1614.725 kb on + strandat 1614.869 kb on + strand, within Xcc-8004.1680.1at 1614.900 kb on + strand, within Xcc-8004.1680.1at 1614.900 kb on + strand, within Xcc-8004.1680.1at 1614.901 kb on - strand, within Xcc-8004.1680.1at 1614.972 kb on + strand, within Xcc-8004.1680.1at 1614.973 kb on - strand, within Xcc-8004.1680.1at 1614.973 kb on - strand, within Xcc-8004.1680.1at 1614.973 kb on - strand, within Xcc-8004.1680.1at 1615.146 kb on + strand, within Xcc-8004.1680.1at 1615.147 kb on - strand, within Xcc-8004.1680.1at 1615.147 kb on - strand, within Xcc-8004.1680.1at 1615.147 kb on - strand, within Xcc-8004.1680.1at 1615.152 kb on + strand, within Xcc-8004.1680.1at 1615.152 kb on + strand, within Xcc-8004.1680.1at 1615.152 kb on + strand, within Xcc-8004.1680.1at 1615.152 kb on + strand, within Xcc-8004.1680.1at 1615.152 kb on + strand, within Xcc-8004.1680.1at 1615.152 kb on + strand, within Xcc-8004.1680.1at 1615.153 kb on - strand, within Xcc-8004.1680.1at 1615.222 kb on + strand, within Xcc-8004.1680.1at 1615.222 kb on + strand, within Xcc-8004.1680.1at 1615.222 kb on + strand, within Xcc-8004.1680.1at 1615.222 kb on + strand, within Xcc-8004.1680.1at 1615.223 kb on - strand, within Xcc-8004.1680.1at 1615.223 kb on - strand, within Xcc-8004.1680.1at 1615.223 kb on - strand, within Xcc-8004.1680.1at 1615.223 kb on - strand, within Xcc-8004.1680.1at 1615.223 kb on - strand, within Xcc-8004.1680.1at 1615.223 kb on - strand, within Xcc-8004.1680.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.499 kb on + strand, within Xcc-8004.1681.1at 1615.500 kb on - strand, within Xcc-8004.1681.1at 1615.529 kb on + strand, within Xcc-8004.1681.1at 1615.550 kb on + strand, within Xcc-8004.1681.1at 1615.673 kb on + strand, within Xcc-8004.1681.1at 1615.702 kb on + strand, within Xcc-8004.1681.1at 1615.748 kb on + strand, within Xcc-8004.1681.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,613,680 + Xcc-8004.1678.1 0.77 +0.1
1,613,680 + Xcc-8004.1678.1 0.77 +0.9
1,613,680 + Xcc-8004.1678.1 0.77 +0.1
1,613,830 + Xcc-8004.1678.1 0.89 +1.2
1,613,845 + -0.3
1,613,863 + -1.7
1,613,863 + +0.3
1,613,863 + -0.3
1,614,725 + -1.4
1,614,725 + -1.9
1,614,725 + +0.3
1,614,725 + -0.9
1,614,725 + -0.7
1,614,725 + +0.0
1,614,869 + Xcc-8004.1680.1 0.28 -1.6
1,614,900 + Xcc-8004.1680.1 0.33 -1.4
1,614,900 + Xcc-8004.1680.1 0.33 -1.0
1,614,901 - Xcc-8004.1680.1 0.33 -2.7
1,614,972 + Xcc-8004.1680.1 0.43 -1.6
1,614,973 - Xcc-8004.1680.1 0.43 -1.4
1,614,973 - Xcc-8004.1680.1 0.43 -0.8
1,614,973 - Xcc-8004.1680.1 0.43 -1.1
1,615,146 + Xcc-8004.1680.1 0.67 -2.0
1,615,147 - Xcc-8004.1680.1 0.67 -2.5
1,615,147 - Xcc-8004.1680.1 0.67 -0.8
1,615,147 - Xcc-8004.1680.1 0.67 +0.9
1,615,152 + Xcc-8004.1680.1 0.68 -0.3
1,615,152 + Xcc-8004.1680.1 0.68 -1.7
1,615,152 + Xcc-8004.1680.1 0.68 -0.5
1,615,152 + Xcc-8004.1680.1 0.68 +0.9
1,615,152 + Xcc-8004.1680.1 0.68 -0.6
1,615,152 + Xcc-8004.1680.1 0.68 -0.6
1,615,153 - Xcc-8004.1680.1 0.68 -2.0
1,615,222 + Xcc-8004.1680.1 0.78 -0.5
1,615,222 + Xcc-8004.1680.1 0.78 -0.1
1,615,222 + Xcc-8004.1680.1 0.78 -1.6
1,615,222 + Xcc-8004.1680.1 0.78 -0.4
1,615,223 - Xcc-8004.1680.1 0.78 -0.9
1,615,223 - Xcc-8004.1680.1 0.78 -0.4
1,615,223 - Xcc-8004.1680.1 0.78 -2.9
1,615,223 - Xcc-8004.1680.1 0.78 -0.0
1,615,223 - Xcc-8004.1680.1 0.78 -0.6
1,615,223 - Xcc-8004.1680.1 0.78 -1.4
1,615,499 + Xcc-8004.1681.1 0.12 +1.0
1,615,499 + Xcc-8004.1681.1 0.12 +2.2
1,615,499 + Xcc-8004.1681.1 0.12 -0.2
1,615,499 + Xcc-8004.1681.1 0.12 +1.1
1,615,499 + Xcc-8004.1681.1 0.12 -1.0
1,615,499 + Xcc-8004.1681.1 0.12 -0.0
1,615,499 + Xcc-8004.1681.1 0.12 -0.2
1,615,499 + Xcc-8004.1681.1 0.12 +0.8
1,615,500 - Xcc-8004.1681.1 0.12 +1.4
1,615,529 + Xcc-8004.1681.1 0.15 +0.1
1,615,550 + Xcc-8004.1681.1 0.17 -1.5
1,615,673 + Xcc-8004.1681.1 0.29 +0.4
1,615,702 + Xcc-8004.1681.1 0.32 -0.2
1,615,748 + Xcc-8004.1681.1 0.36 -0.1

Or see this region's nucleotide sequence