Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1676.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,609,669	+		Xcc-8004.1673.1	0.47	+0.8
1,609,670	-		Xcc-8004.1673.1	0.48	+0.2
1,609,750	+		Xcc-8004.1673.1	0.60	+0.0
1,609,750	+		Xcc-8004.1673.1	0.60	-0.9
1,609,750	+		Xcc-8004.1673.1	0.60	-0.6
1,609,750	+		Xcc-8004.1673.1	0.60	-1.5
1,609,751	-		Xcc-8004.1673.1	0.60	-0.5
1,609,751	-		Xcc-8004.1673.1	0.60	+0.1
1,609,751	-		Xcc-8004.1673.1	0.60	+0.9
1,609,970	+				+0.1
1,609,970	+				-1.0
1,610,012	+				+0.1
1,610,012	+				-0.1
1,610,012	+				+0.1
1,610,012	+				+1.1
1,610,012	+				-0.6
1,610,012	+				-0.7
1,610,012	+				+0.9
1,610,012	+				+0.9
1,610,013	-				+0.0
1,610,013	-				+0.2
1,610,013	-				-1.0
1,610,013	-				+0.2
1,610,013	-				-0.6
1,610,013	-				+0.7
1,610,030	+				-0.8
1,610,030	+				+1.1
1,610,030	+				+0.5
1,610,030	+				+0.4
1,610,031	-				-0.2
1,610,031	-				-0.1
1,610,031	-				+0.2
1,610,031	-				-0.7
1,610,031	-				+0.2
1,610,031	-				+0.8
1,610,032	+				+0.8
1,610,112	+		Xcc-8004.1675.1	0.14	-0.6
1,610,112	+		Xcc-8004.1675.1	0.14	-0.2
1,610,112	+		Xcc-8004.1675.1	0.14	+2.2
1,610,113	-		Xcc-8004.1675.1	0.14	+0.2
1,610,113	-		Xcc-8004.1675.1	0.14	+0.2
1,610,216	+		Xcc-8004.1675.1	0.37	-0.3
1,610,216	+		Xcc-8004.1675.1	0.37	-1.2
1,610,217	-		Xcc-8004.1675.1	0.37	-0.2
1,610,217	-		Xcc-8004.1675.1	0.37	-0.3
1,610,217	-		Xcc-8004.1675.1	0.37	-0.0
1,610,423	+		Xcc-8004.1675.1	0.82	+0.6
1,610,423	+		Xcc-8004.1675.1	0.82	-1.0
1,610,423	+		Xcc-8004.1675.1	0.82	-0.6
1,610,423	+		Xcc-8004.1675.1	0.82	-1.7
1,610,423	+		Xcc-8004.1675.1	0.82	-0.7
1,610,423	+		Xcc-8004.1675.1	0.82	+0.7
1,610,423	+		Xcc-8004.1675.1	0.82	+1.1
1,610,423	+		Xcc-8004.1675.1	0.82	-0.4
1,610,424	-		Xcc-8004.1675.1	0.82	+0.3
1,610,424	-		Xcc-8004.1675.1	0.82	-0.2
1,610,424	-		Xcc-8004.1675.1	0.82	-1.7
1,610,478	+				+0.6
1,610,478	+				+0.1
1,610,478	+				-0.2
1,610,478	+				-0.0
1,610,478	+				-0.7
1,610,478	+				-2.0
1,610,479	-				+0.6
1,610,479	-				+1.8
1,610,479	-				-1.2
1,610,479	-				-1.3
1,610,486	+				-0.4
1,610,486	+				-0.7
1,610,486	+				+1.1
1,610,486	+				+0.3
1,610,486	+				+0.1
1,610,486	+				-0.1
1,610,487	-				-0.2
1,610,487	-				+0.1
1,610,487	-				-0.6
1,610,487	-				-1.0
1,610,880	+		Xcc-8004.1676.1	0.34	-2.7
1,610,880	+		Xcc-8004.1676.1	0.34	-2.8
1,610,964	+		Xcc-8004.1676.1	0.42	-0.5
1,610,965	-		Xcc-8004.1676.1	0.42	-3.4
1,610,965	-		Xcc-8004.1676.1	0.42	-2.2
1,610,965	-		Xcc-8004.1676.1	0.42	-1.7
1,610,965	-		Xcc-8004.1676.1	0.42	-1.9
1,610,985	+		Xcc-8004.1676.1	0.44	-1.5
1,611,105	+		Xcc-8004.1676.1	0.55	-2.7
1,611,105	+		Xcc-8004.1676.1	0.55	-0.5
1,611,105	+		Xcc-8004.1676.1	0.55	-2.9
1,611,120	+		Xcc-8004.1676.1	0.56	-2.7
1,611,120	+		Xcc-8004.1676.1	0.56	-2.5
1,611,120	+		Xcc-8004.1676.1	0.56	-3.1
1,611,121	-		Xcc-8004.1676.1	0.57	-1.3
1,611,243	+		Xcc-8004.1676.1	0.68	-2.9
1,611,243	+		Xcc-8004.1676.1	0.68	-3.3
1,611,243	+		Xcc-8004.1676.1	0.68	+0.0
1,611,244	-		Xcc-8004.1676.1	0.68	-1.7
1,611,244	-		Xcc-8004.1676.1	0.68	-3.2
1,611,244	-		Xcc-8004.1676.1	0.68	-0.9
1,611,402	+		Xcc-8004.1676.1	0.83	-3.7
1,611,402	+		Xcc-8004.1676.1	0.83	-1.9
1,611,402	+		Xcc-8004.1676.1	0.83	-1.3
1,611,402	+		Xcc-8004.1676.1	0.83	-0.2
1,611,402	+		Xcc-8004.1676.1	0.83	-1.0
1,611,403	-		Xcc-8004.1676.1	0.83	-2.6
1,611,403	-		Xcc-8004.1676.1	0.83	-2.5
1,611,403	-		Xcc-8004.1676.1	0.83	-2.3
1,611,403	-		Xcc-8004.1676.1	0.83	-3.2
1,611,403	-		Xcc-8004.1676.1	0.83	-1.7
1,611,403	-		Xcc-8004.1676.1	0.83	-2.9
1,611,403	-		Xcc-8004.1676.1	0.83	-3.0
1,611,403	-		Xcc-8004.1676.1	0.83	-2.1
1,611,403	-		Xcc-8004.1676.1	0.83	-0.8
1,611,540	+				-2.0
1,611,540	+				-0.5
1,611,541	-				-2.3
1,611,541	-				-1.8
1,611,541	-				-1.5
1,611,541	-				-1.7
1,611,615	+				+1.8
1,611,665	+				-0.1
1,611,671	+				+0.8
1,611,671	+				+0.3
1,611,671	+				-1.0
1,611,671	+				+0.4
1,611,671	+				-0.6
1,611,671	+				+1.0
1,611,671	+				-0.3
1,611,671	+				-0.0
1,611,671	+				-0.9
1,611,671	+				-1.3
1,611,803	+		Xcc-8004.1677.1	0.11	-0.7
1,611,803	+		Xcc-8004.1677.1	0.11	-2.7
1,611,956	+		Xcc-8004.1677.1	0.25	-0.8
1,611,968	+		Xcc-8004.1677.1	0.26	-0.2
1,612,316	+		Xcc-8004.1677.1	0.57	-0.8
1,612,316	+		Xcc-8004.1677.1	0.57	-0.3
1,612,316	+		Xcc-8004.1677.1	0.57	-1.8
1,612,568	+		Xcc-8004.1677.1	0.80	+0.2
1,612,568	+		Xcc-8004.1677.1	0.80	+0.2