Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1658.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,597,028	+				-1.8
1,597,028	+				-1.7
1,597,028	+				-2.2
1,597,029	-				-0.4
1,597,029	-				-1.8
1,597,225	+		Xcc-8004.1657.1	0.54	-0.8
1,597,225	+		Xcc-8004.1657.1	0.54	-0.7
1,597,409	+				-0.4
1,597,409	+				+0.2
1,597,410	-				+1.5
1,597,444	+				+0.4
1,597,444	+				-0.9
1,597,513	-				-0.4
1,597,646	+				-0.3
1,597,646	+				+0.3
1,597,647	-				-0.7
1,597,656	+				+0.2
1,597,657	-				+0.2
1,597,707	+				+0.2
1,597,707	+				-1.0
1,597,707	+				-0.3
1,597,707	+				+0.8
1,597,707	+				+0.4
1,597,708	-				+0.4
1,597,708	-				+0.3
1,597,708	-				+0.8
1,597,755	+				-0.3
1,597,756	-				-0.0
1,597,756	-				-1.0
1,597,756	-				+0.4
1,597,818	+				+0.6
1,597,818	+				-0.2
1,598,025	+				-2.9
1,598,025	+				-2.3
1,598,026	-				-1.2
1,598,026	-				-1.8
1,598,026	-				-0.0
1,598,073	+		Xcc-8004.1658.1	0.15	-2.6
1,598,073	+		Xcc-8004.1658.1	0.15	-1.3
1,598,073	+		Xcc-8004.1658.1	0.15	-1.6
1,598,073	+		Xcc-8004.1658.1	0.15	-0.8
1,598,073	+		Xcc-8004.1658.1	0.15	-2.2
1,598,074	-		Xcc-8004.1658.1	0.15	-3.5
1,598,074	-		Xcc-8004.1658.1	0.15	-1.4
1,598,074	-		Xcc-8004.1658.1	0.15	-0.5
1,598,074	-		Xcc-8004.1658.1	0.15	-0.8
1,598,074	-		Xcc-8004.1658.1	0.15	-1.1
1,598,074	-		Xcc-8004.1658.1	0.15	-1.7
1,598,139	+		Xcc-8004.1658.1	0.22	-3.6
1,598,169	+		Xcc-8004.1658.1	0.26	-1.0
1,598,170	-		Xcc-8004.1658.1	0.26	-1.2
1,598,286	+		Xcc-8004.1658.1	0.39	-3.3
1,598,286	+		Xcc-8004.1658.1	0.39	-0.6
1,598,287	-		Xcc-8004.1658.1	0.39	-2.2
1,598,287	-		Xcc-8004.1658.1	0.39	-1.2
1,598,506	-		Xcc-8004.1658.1	0.64	-1.4
1,598,724	+		Xcc-8004.1658.1	0.89	-3.0
1,598,724	+		Xcc-8004.1658.1	0.89	-1.9
1,598,725	-		Xcc-8004.1658.1	0.89	-1.2
1,598,725	-		Xcc-8004.1658.1	0.89	-2.6
1,598,725	-		Xcc-8004.1658.1	0.89	-0.8
1,598,725	-		Xcc-8004.1658.1	0.89	-2.9
1,598,727	+		Xcc-8004.1658.1	0.89	-2.6
1,598,727	+		Xcc-8004.1658.1	0.89	-0.9
1,598,728	-		Xcc-8004.1658.1	0.90	-2.1
1,598,728	-		Xcc-8004.1658.1	0.90	-3.3
1,599,078	-		Xcc-8004.1659.1	0.28	-0.8
1,599,078	-		Xcc-8004.1659.1	0.28	-1.2
1,599,377	+		Xcc-8004.1659.1	0.59	-0.2
1,599,378	-		Xcc-8004.1659.1	0.59	-0.2
1,599,652	-		Xcc-8004.1659.1	0.88	+1.8
1,599,759	+				-0.6
1,599,759	+				-1.0
1,599,760	-				-1.2
1,599,789	+				-2.6
1,599,790	-				+0.7