Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.163.1 and Xcc-8004.164.1 are separated by 186 nucleotides Xcc-8004.164.1 and Xcc-8004.165.1 are separated by 60 nucleotides Xcc-8004.165.1 and Xcc-8004.166.1 overlap by 4 nucleotides Xcc-8004.166.1 and Xcc-8004.168.1 are separated by 505 nucleotides
Xcc-8004.163.1: Xcc-8004.163.1 - FIG01210576: hypothetical protein, at 155,229 to 159,110
Xcc-8004.163.1
Xcc-8004.164.1: Xcc-8004.164.1 - putative; ORF located using Glimmer/Genemark, at 159,297 to 159,506
Xcc-8004.164.1
Xcc-8004.165.1: Xcc-8004.165.1 - hypothetical protein, at 159,567 to 159,950
Xcc-8004.165.1
Xcc-8004.166.1: Xcc-8004.166.1 - FIG01209997: hypothetical protein, at 159,947 to 160,204
Xcc-8004.166.1
Xcc-8004.168.1: Xcc-8004.168.1 - hypothetical protein, at 160,710 to 161,405
Xcc-8004.168.1
Position (kb) 159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 158.764 kb on + strand at 158.962 kb on + strand at 158.962 kb on + strand at 158.962 kb on + strand at 158.962 kb on + strand at 158.963 kb on - strand at 158.963 kb on - strand at 159.057 kb on - strand at 159.152 kb on + strand at 159.152 kb on + strand at 159.152 kb on + strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.153 kb on - strand at 159.253 kb on + strand at 159.253 kb on + strand at 159.254 kb on - strand at 159.378 kb on - strand, within Xcc-8004.164.1 at 159.421 kb on - strand, within Xcc-8004.164.1 at 159.421 kb on - strand, within Xcc-8004.164.1 at 159.459 kb on + strand, within Xcc-8004.164.1 at 159.459 kb on + strand, within Xcc-8004.164.1 at 159.460 kb on - strand, within Xcc-8004.164.1 at 159.460 kb on - strand, within Xcc-8004.164.1 at 159.473 kb on + strand, within Xcc-8004.164.1 at 159.473 kb on + strand, within Xcc-8004.164.1 at 159.474 kb on - strand, within Xcc-8004.164.1 at 159.474 kb on - strand, within Xcc-8004.164.1 at 159.505 kb on - strand at 159.543 kb on - strand at 159.543 kb on - strand at 159.554 kb on + strand at 159.555 kb on - strand at 159.586 kb on + strand at 159.654 kb on - strand, within Xcc-8004.165.1 at 159.668 kb on - strand, within Xcc-8004.165.1 at 159.935 kb on + strand at 159.936 kb on - strand at 159.981 kb on + strand, within Xcc-8004.166.1 at 159.981 kb on + strand, within Xcc-8004.166.1 at 159.981 kb on + strand, within Xcc-8004.166.1 at 160.009 kb on + strand, within Xcc-8004.166.1 at 160.043 kb on - strand, within Xcc-8004.166.1 at 160.050 kb on - strand, within Xcc-8004.166.1 at 160.100 kb on + strand, within Xcc-8004.166.1 at 160.101 kb on - strand, within Xcc-8004.166.1 at 160.101 kb on - strand, within Xcc-8004.166.1 at 160.101 kb on - strand, within Xcc-8004.166.1 at 160.167 kb on - strand, within Xcc-8004.166.1 at 160.167 kb on - strand, within Xcc-8004.166.1 at 160.169 kb on + strand, within Xcc-8004.166.1 at 160.170 kb on - strand, within Xcc-8004.166.1 at 160.255 kb on + strand at 160.280 kb on + strand at 160.306 kb on - strand at 160.306 kb on - strand at 160.481 kb on + strand at 160.487 kb on + strand at 160.527 kb on + strand at 160.527 kb on + strand at 160.527 kb on + strand at 160.528 kb on - strand at 160.528 kb on - strand at 160.558 kb on + strand at 160.590 kb on - strand at 160.596 kb on - strand at 160.637 kb on - strand at 160.648 kb on + strand at 160.685 kb on + strand at 160.685 kb on + strand at 160.686 kb on - strand at 160.686 kb on - strand at 160.824 kb on + strand, within Xcc-8004.168.1 at 160.824 kb on + strand, within Xcc-8004.168.1 at 160.824 kb on + strand, within Xcc-8004.168.1 at 160.825 kb on - strand, within Xcc-8004.168.1 at 160.825 kb on - strand, within Xcc-8004.168.1 at 160.827 kb on + strand, within Xcc-8004.168.1 at 160.828 kb on - strand, within Xcc-8004.168.1 at 160.842 kb on - strand, within Xcc-8004.168.1 at 160.847 kb on + strand, within Xcc-8004.168.1 at 160.847 kb on + strand, within Xcc-8004.168.1 at 160.851 kb on + strand, within Xcc-8004.168.1 at 160.851 kb on + strand, within Xcc-8004.168.1 at 160.851 kb on + strand, within Xcc-8004.168.1 at 160.851 kb on + strand, within Xcc-8004.168.1 at 160.852 kb on - strand, within Xcc-8004.168.1 at 160.852 kb on - strand, within Xcc-8004.168.1 at 160.853 kb on + strand, within Xcc-8004.168.1 at 160.853 kb on + strand, within Xcc-8004.168.1 at 160.853 kb on + strand, within Xcc-8004.168.1 at 160.854 kb on - strand, within Xcc-8004.168.1 at 160.854 kb on - strand, within Xcc-8004.168.1 at 160.854 kb on - strand, within Xcc-8004.168.1 at 160.854 kb on - strand, within Xcc-8004.168.1 at 160.854 kb on - strand, within Xcc-8004.168.1 at 160.854 kb on - strand, within Xcc-8004.168.1 at 160.919 kb on + strand, within Xcc-8004.168.1 at 160.919 kb on + strand, within Xcc-8004.168.1 at 160.920 kb on - strand, within Xcc-8004.168.1 at 160.926 kb on + strand, within Xcc-8004.168.1 at 160.926 kb on + strand, within Xcc-8004.168.1 at 160.927 kb on - strand, within Xcc-8004.168.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 158,764 + +0.5 158,962 + -0.6 158,962 + +0.3 158,962 + +0.4 158,962 + -0.0 158,963 - -0.2 158,963 - +1.2 159,057 - +0.1 159,152 + +1.3 159,152 + +0.5 159,152 + -0.1 159,153 - -1.2 159,153 - +0.9 159,153 - +0.3 159,153 - -1.1 159,153 - -0.5 159,153 - +0.9 159,253 + +0.3 159,253 + -1.2 159,254 - -0.1 159,378 - Xcc-8004.164.1 0.39 -0.4 159,421 - Xcc-8004.164.1 0.59 +0.4 159,421 - Xcc-8004.164.1 0.59 -1.2 159,459 + Xcc-8004.164.1 0.77 +0.4 159,459 + Xcc-8004.164.1 0.77 -0.2 159,460 - Xcc-8004.164.1 0.78 -0.3 159,460 - Xcc-8004.164.1 0.78 -0.3 159,473 + Xcc-8004.164.1 0.84 -0.5 159,473 + Xcc-8004.164.1 0.84 +1.1 159,474 - Xcc-8004.164.1 0.84 -1.5 159,474 - Xcc-8004.164.1 0.84 -1.0 159,505 - -0.2 159,543 - +0.1 159,543 - -0.3 159,554 + -1.1 159,555 - -0.8 159,586 + +0.4 159,654 - Xcc-8004.165.1 0.23 -0.1 159,668 - Xcc-8004.165.1 0.26 -2.4 159,935 + -0.3 159,936 - -0.4 159,981 + Xcc-8004.166.1 0.13 +1.2 159,981 + Xcc-8004.166.1 0.13 +0.4 159,981 + Xcc-8004.166.1 0.13 -0.2 160,009 + Xcc-8004.166.1 0.24 -0.6 160,043 - Xcc-8004.166.1 0.37 -1.1 160,050 - Xcc-8004.166.1 0.40 +0.4 160,100 + Xcc-8004.166.1 0.59 -1.2 160,101 - Xcc-8004.166.1 0.60 -0.2 160,101 - Xcc-8004.166.1 0.60 +0.3 160,101 - Xcc-8004.166.1 0.60 -0.4 160,167 - Xcc-8004.166.1 0.85 +0.5 160,167 - Xcc-8004.166.1 0.85 -1.7 160,169 + Xcc-8004.166.1 0.86 +0.9 160,170 - Xcc-8004.166.1 0.86 +0.3 160,255 + +0.0 160,280 + -0.4 160,306 - -0.3 160,306 - -0.1 160,481 + +1.3 160,487 + -0.2 160,527 + -1.5 160,527 + +0.3 160,527 + +0.2 160,528 - -0.2 160,528 - +0.8 160,558 + -0.3 160,590 - -0.2 160,596 - -0.6 160,637 - +0.8 160,648 + +0.3 160,685 + -0.5 160,685 + -2.1 160,686 - +0.0 160,686 - -0.4 160,824 + Xcc-8004.168.1 0.16 +0.4 160,824 + Xcc-8004.168.1 0.16 -0.1 160,824 + Xcc-8004.168.1 0.16 -0.3 160,825 - Xcc-8004.168.1 0.17 +0.1 160,825 - Xcc-8004.168.1 0.17 -1.6 160,827 + Xcc-8004.168.1 0.17 -0.6 160,828 - Xcc-8004.168.1 0.17 -1.5 160,842 - Xcc-8004.168.1 0.19 +1.7 160,847 + Xcc-8004.168.1 0.20 -0.1 160,847 + Xcc-8004.168.1 0.20 -0.3 160,851 + Xcc-8004.168.1 0.20 +1.1 160,851 + Xcc-8004.168.1 0.20 -0.9 160,851 + Xcc-8004.168.1 0.20 +0.3 160,851 + Xcc-8004.168.1 0.20 -1.5 160,852 - Xcc-8004.168.1 0.20 -0.2 160,852 - Xcc-8004.168.1 0.20 -0.9 160,853 + Xcc-8004.168.1 0.21 -0.8 160,853 + Xcc-8004.168.1 0.21 -0.3 160,853 + Xcc-8004.168.1 0.21 +0.0 160,854 - Xcc-8004.168.1 0.21 +1.5 160,854 - Xcc-8004.168.1 0.21 -0.6 160,854 - Xcc-8004.168.1 0.21 +0.6 160,854 - Xcc-8004.168.1 0.21 -1.9 160,854 - Xcc-8004.168.1 0.21 +0.4 160,854 - Xcc-8004.168.1 0.21 +1.1 160,919 + Xcc-8004.168.1 0.30 +0.7 160,919 + Xcc-8004.168.1 0.30 -2.0 160,920 - Xcc-8004.168.1 0.30 -0.3 160,926 + Xcc-8004.168.1 0.31 -0.1 160,926 + Xcc-8004.168.1 0.31 -1.1 160,927 - Xcc-8004.168.1 0.31 -0.1
Or see this region's nucleotide sequence