Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1616.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,556,921	+		Xcc-8004.1615.1	0.48	-1.2
1,556,922	-		Xcc-8004.1615.1	0.48	-0.6
1,556,922	-		Xcc-8004.1615.1	0.48	-0.8
1,557,337	-		Xcc-8004.1615.1	0.86	-1.8
1,557,444	+				-0.0
1,557,444	+				-0.6
1,557,504	+				-2.0
1,557,731	+		Xcc-8004.1616.1	0.44	-0.4
1,557,732	-		Xcc-8004.1616.1	0.44	-2.9
1,558,049	-				-1.3
1,558,822	-				+0.0
1,558,822	-				-0.9
1,558,934	+				-1.4
1,558,934	+				-0.2
1,558,934	+				-1.6
1,558,934	+				-0.4
1,558,934	+				+0.3
1,558,934	+				+0.3
1,558,934	+				-0.0
1,558,934	+				-0.8
1,558,934	+				-1.0
1,558,934	+				+0.1
1,558,934	+				+0.1
1,558,934	+				+0.2
1,558,935	-				+0.2
1,558,935	-				-0.2
1,558,935	-				-1.3
1,558,935	-				-0.6
1,558,935	-				-0.2
1,558,935	-				-0.1
1,558,935	-				-0.3
1,558,935	-				-1.2
1,558,935	-				+1.5
1,558,935	-				+1.1
1,558,935	-				-0.3
1,558,935	-				-0.5
1,558,937	+				+0.4
1,558,937	+				+0.1
1,558,937	+				-0.3
1,558,937	+				-0.0
1,558,937	+				+0.0
1,558,937	+				-0.5
1,558,937	+				-1.3
1,558,938	-				-1.4
1,558,938	-				+0.5
1,558,938	-				+0.2
1,558,938	-				-0.3
1,558,938	-				+0.3
1,558,938	-				-0.5
1,558,938	-				-1.1
1,558,938	-				+0.5
1,559,026	+				-0.2
1,559,026	+				+0.5
1,559,026	+				-0.7
1,559,027	-				+0.2
1,559,027	-				-0.5
1,559,027	-				+1.3
1,559,027	-				+0.5
1,559,027	-				+0.0
1,559,028	-				+0.7