Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1613.1 and Xcc-8004.1614.1 are separated by 487 nucleotides Xcc-8004.1614.1 and Xcc-8004.1615.1 are separated by 53 nucleotides Xcc-8004.1615.1 and Xcc-8004.1616.1 overlap by 4 nucleotides Xcc-8004.1616.1 and Xcc-8004.1617.1 are separated by 194 nucleotides
Xcc-8004.1613.1: Xcc-8004.1613.1 - FIG01210154: hypothetical protein, at 1,555,229 to 1,555,480
Xcc-8004.1613.1
Xcc-8004.1614.1: Xcc-8004.1614.1 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,555,968 to 1,556,330
Xcc-8004.1614.1
Xcc-8004.1615.1: Xcc-8004.1615.1 - 3-dehydroquinate synthase (EC 4.2.3.4), at 1,556,384 to 1,557,496
Xcc-8004.1615.1
Xcc-8004.1616.1: Xcc-8004.1616.1 - Shikimate kinase I (EC 2.7.1.71), at 1,557,493 to 1,558,035
Xcc-8004.1616.1
Xcc-8004.1617.1: Xcc-8004.1617.1 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,558,230 to 1,558,829
Xcc-8004.1617.1
Position (kb) 1556
1557
1558 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1555.431 kb on + strand, within Xcc-8004.1613.1 at 1555.432 kb on - strand, within Xcc-8004.1613.1 at 1555.432 kb on - strand, within Xcc-8004.1613.1 at 1555.432 kb on - strand, within Xcc-8004.1613.1 at 1555.491 kb on + strand at 1555.619 kb on - strand at 1556.921 kb on + strand, within Xcc-8004.1615.1 at 1556.922 kb on - strand, within Xcc-8004.1615.1 at 1556.922 kb on - strand, within Xcc-8004.1615.1 at 1557.337 kb on - strand, within Xcc-8004.1615.1 at 1557.444 kb on + strand at 1557.444 kb on + strand at 1557.504 kb on + strand at 1557.731 kb on + strand, within Xcc-8004.1616.1 at 1557.732 kb on - strand, within Xcc-8004.1616.1 at 1558.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 1,555,431 + Xcc-8004.1613.1 0.80 +0.4 1,555,432 - Xcc-8004.1613.1 0.81 -3.7 1,555,432 - Xcc-8004.1613.1 0.81 -0.6 1,555,432 - Xcc-8004.1613.1 0.81 -0.4 1,555,491 + +0.6 1,555,619 - -0.8 1,556,921 + Xcc-8004.1615.1 0.48 -1.2 1,556,922 - Xcc-8004.1615.1 0.48 -0.6 1,556,922 - Xcc-8004.1615.1 0.48 -0.8 1,557,337 - Xcc-8004.1615.1 0.86 -1.8 1,557,444 + -0.0 1,557,444 + -0.6 1,557,504 + -2.0 1,557,731 + Xcc-8004.1616.1 0.44 -0.4 1,557,732 - Xcc-8004.1616.1 0.44 -2.9 1,558,049 - -1.3
Or see this region's nucleotide sequence