Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1594.1

Experiment: Pectin from apple 2 g/L (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1592.1 and Xcc-8004.1594.1 are separated by 133 nucleotidesXcc-8004.1594.1 and Xcc-8004.1596.1 overlap by 4 nucleotides Xcc-8004.1592.1: Xcc-8004.1592.1 - Membrane proteins related to metalloendopeptidases, at 1,530,009 to 1,531,031 Xcc-8004.1592.1 Xcc-8004.1594.1: Xcc-8004.1594.1 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 1,531,165 to 1,532,262 Xcc-8004.1594.1 Xcc-8004.1596.1: Xcc-8004.1596.1 - hypothetical protein, at 1,532,259 to 1,533,476 Xcc-8004.1596.1 Position (kb) 1531 1532 1533Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1530.220 kb on + strand, within Xcc-8004.1592.1at 1530.220 kb on + strand, within Xcc-8004.1592.1at 1530.220 kb on + strand, within Xcc-8004.1592.1at 1530.220 kb on + strand, within Xcc-8004.1592.1at 1530.220 kb on + strand, within Xcc-8004.1592.1at 1530.220 kb on + strand, within Xcc-8004.1592.1at 1530.221 kb on - strand, within Xcc-8004.1592.1at 1530.221 kb on - strand, within Xcc-8004.1592.1at 1530.221 kb on - strand, within Xcc-8004.1592.1at 1530.221 kb on - strand, within Xcc-8004.1592.1at 1530.221 kb on - strand, within Xcc-8004.1592.1at 1530.221 kb on - strand, within Xcc-8004.1592.1at 1530.385 kb on + strand, within Xcc-8004.1592.1at 1530.385 kb on + strand, within Xcc-8004.1592.1at 1530.385 kb on + strand, within Xcc-8004.1592.1at 1530.385 kb on + strand, within Xcc-8004.1592.1at 1530.386 kb on - strand, within Xcc-8004.1592.1at 1530.386 kb on - strand, within Xcc-8004.1592.1at 1530.386 kb on - strand, within Xcc-8004.1592.1at 1530.386 kb on - strand, within Xcc-8004.1592.1at 1530.412 kb on + strand, within Xcc-8004.1592.1at 1530.412 kb on + strand, within Xcc-8004.1592.1at 1530.412 kb on + strand, within Xcc-8004.1592.1at 1530.412 kb on + strand, within Xcc-8004.1592.1at 1530.412 kb on + strand, within Xcc-8004.1592.1at 1530.413 kb on - strand, within Xcc-8004.1592.1at 1530.413 kb on - strand, within Xcc-8004.1592.1at 1530.413 kb on - strand, within Xcc-8004.1592.1at 1530.413 kb on - strand, within Xcc-8004.1592.1at 1530.413 kb on - strand, within Xcc-8004.1592.1at 1530.413 kb on - strand, within Xcc-8004.1592.1at 1530.424 kb on + strand, within Xcc-8004.1592.1at 1530.424 kb on + strand, within Xcc-8004.1592.1at 1530.424 kb on + strand, within Xcc-8004.1592.1at 1530.706 kb on + strand, within Xcc-8004.1592.1at 1530.706 kb on + strand, within Xcc-8004.1592.1at 1530.706 kb on + strand, within Xcc-8004.1592.1at 1530.706 kb on + strand, within Xcc-8004.1592.1at 1530.707 kb on - strand, within Xcc-8004.1592.1at 1530.707 kb on - strand, within Xcc-8004.1592.1at 1530.707 kb on - strand, within Xcc-8004.1592.1at 1530.707 kb on - strand, within Xcc-8004.1592.1at 1530.942 kb on + strandat 1530.942 kb on + strandat 1530.942 kb on + strandat 1530.942 kb on + strandat 1531.035 kb on - strandat 1531.035 kb on - strandat 1531.035 kb on - strandat 1531.276 kb on + strand, within Xcc-8004.1594.1at 1531.276 kb on + strand, within Xcc-8004.1594.1at 1531.276 kb on + strand, within Xcc-8004.1594.1at 1531.277 kb on - strand, within Xcc-8004.1594.1at 1531.277 kb on - strand, within Xcc-8004.1594.1at 1531.277 kb on - strand, within Xcc-8004.1594.1at 1531.277 kb on - strand, within Xcc-8004.1594.1at 1531.277 kb on - strand, within Xcc-8004.1594.1at 1531.293 kb on + strand, within Xcc-8004.1594.1at 1531.293 kb on + strand, within Xcc-8004.1594.1at 1531.338 kb on - strand, within Xcc-8004.1594.1at 1531.338 kb on - strand, within Xcc-8004.1594.1at 1531.338 kb on - strand, within Xcc-8004.1594.1at 1531.484 kb on + strand, within Xcc-8004.1594.1at 1531.485 kb on - strand, within Xcc-8004.1594.1at 1531.669 kb on + strand, within Xcc-8004.1594.1at 1531.762 kb on + strand, within Xcc-8004.1594.1at 1531.763 kb on - strand, within Xcc-8004.1594.1at 1531.870 kb on + strand, within Xcc-8004.1594.1at 1531.954 kb on + strand, within Xcc-8004.1594.1at 1531.954 kb on + strand, within Xcc-8004.1594.1at 1531.954 kb on + strand, within Xcc-8004.1594.1at 1531.954 kb on + strand, within Xcc-8004.1594.1at 1531.954 kb on + strand, within Xcc-8004.1594.1at 1531.955 kb on - strand, within Xcc-8004.1594.1at 1531.978 kb on + strand, within Xcc-8004.1594.1at 1531.978 kb on + strand, within Xcc-8004.1594.1at 1531.978 kb on + strand, within Xcc-8004.1594.1at 1531.978 kb on + strand, within Xcc-8004.1594.1at 1531.979 kb on - strand, within Xcc-8004.1594.1at 1532.006 kb on - strand, within Xcc-8004.1594.1at 1532.006 kb on - strand, within Xcc-8004.1594.1at 1532.156 kb on + strandat 1532.157 kb on - strandat 1532.341 kb on - strandat 1532.413 kb on - strand, within Xcc-8004.1596.1at 1532.418 kb on + strand, within Xcc-8004.1596.1at 1532.418 kb on + strand, within Xcc-8004.1596.1at 1532.419 kb on - strand, within Xcc-8004.1596.1at 1532.419 kb on - strand, within Xcc-8004.1596.1at 1532.419 kb on - strand, within Xcc-8004.1596.1at 1532.583 kb on + strand, within Xcc-8004.1596.1at 1532.877 kb on + strand, within Xcc-8004.1596.1at 1532.878 kb on - strand, within Xcc-8004.1596.1at 1532.878 kb on - strand, within Xcc-8004.1596.1at 1533.108 kb on + strand, within Xcc-8004.1596.1at 1533.108 kb on + strand, within Xcc-8004.1596.1at 1533.108 kb on + strand, within Xcc-8004.1596.1at 1533.108 kb on + strand, within Xcc-8004.1596.1at 1533.108 kb on + strand, within Xcc-8004.1596.1at 1533.109 kb on - strand, within Xcc-8004.1596.1at 1533.109 kb on - strand, within Xcc-8004.1596.1at 1533.109 kb on - strand, within Xcc-8004.1596.1at 1533.241 kb on - strand, within Xcc-8004.1596.1at 1533.241 kb on - strand, within Xcc-8004.1596.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
remove
1,530,220 + Xcc-8004.1592.1 0.21 -0.6
1,530,220 + Xcc-8004.1592.1 0.21 +0.6
1,530,220 + Xcc-8004.1592.1 0.21 +0.0
1,530,220 + Xcc-8004.1592.1 0.21 -1.2
1,530,220 + Xcc-8004.1592.1 0.21 -0.4
1,530,220 + Xcc-8004.1592.1 0.21 -0.8
1,530,221 - Xcc-8004.1592.1 0.21 -0.2
1,530,221 - Xcc-8004.1592.1 0.21 -0.2
1,530,221 - Xcc-8004.1592.1 0.21 -0.1
1,530,221 - Xcc-8004.1592.1 0.21 +0.2
1,530,221 - Xcc-8004.1592.1 0.21 +0.1
1,530,221 - Xcc-8004.1592.1 0.21 -1.1
1,530,385 + Xcc-8004.1592.1 0.37 -0.5
1,530,385 + Xcc-8004.1592.1 0.37 -0.1
1,530,385 + Xcc-8004.1592.1 0.37 -0.3
1,530,385 + Xcc-8004.1592.1 0.37 -0.3
1,530,386 - Xcc-8004.1592.1 0.37 +1.3
1,530,386 - Xcc-8004.1592.1 0.37 +0.3
1,530,386 - Xcc-8004.1592.1 0.37 +0.2
1,530,386 - Xcc-8004.1592.1 0.37 +0.7
1,530,412 + Xcc-8004.1592.1 0.39 +0.2
1,530,412 + Xcc-8004.1592.1 0.39 +0.4
1,530,412 + Xcc-8004.1592.1 0.39 -0.4
1,530,412 + Xcc-8004.1592.1 0.39 +0.0
1,530,412 + Xcc-8004.1592.1 0.39 +0.7
1,530,413 - Xcc-8004.1592.1 0.39 -0.3
1,530,413 - Xcc-8004.1592.1 0.39 +0.2
1,530,413 - Xcc-8004.1592.1 0.39 -0.5
1,530,413 - Xcc-8004.1592.1 0.39 -0.6
1,530,413 - Xcc-8004.1592.1 0.39 -1.0
1,530,413 - Xcc-8004.1592.1 0.39 -0.7
1,530,424 + Xcc-8004.1592.1 0.41 -0.5
1,530,424 + Xcc-8004.1592.1 0.41 +0.6
1,530,424 + Xcc-8004.1592.1 0.41 -0.5
1,530,706 + Xcc-8004.1592.1 0.68 +0.3
1,530,706 + Xcc-8004.1592.1 0.68 -1.5
1,530,706 + Xcc-8004.1592.1 0.68 -0.1
1,530,706 + Xcc-8004.1592.1 0.68 -1.2
1,530,707 - Xcc-8004.1592.1 0.68 -0.7
1,530,707 - Xcc-8004.1592.1 0.68 -0.6
1,530,707 - Xcc-8004.1592.1 0.68 -0.2
1,530,707 - Xcc-8004.1592.1 0.68 +0.7
1,530,942 + +0.3
1,530,942 + +0.3
1,530,942 + +0.6
1,530,942 + +0.2
1,531,035 - -1.3
1,531,035 - -0.5
1,531,035 - -0.9
1,531,276 + Xcc-8004.1594.1 0.10 -3.5
1,531,276 + Xcc-8004.1594.1 0.10 -0.2
1,531,276 + Xcc-8004.1594.1 0.10 +0.1
1,531,277 - Xcc-8004.1594.1 0.10 -1.2
1,531,277 - Xcc-8004.1594.1 0.10 -1.1
1,531,277 - Xcc-8004.1594.1 0.10 -1.8
1,531,277 - Xcc-8004.1594.1 0.10 -1.9
1,531,277 - Xcc-8004.1594.1 0.10 -0.8
1,531,293 + Xcc-8004.1594.1 0.12 -3.2
1,531,293 + Xcc-8004.1594.1 0.12 -2.3
1,531,338 - Xcc-8004.1594.1 0.16 -2.3
1,531,338 - Xcc-8004.1594.1 0.16 -4.0
1,531,338 - Xcc-8004.1594.1 0.16 -0.2
1,531,484 + Xcc-8004.1594.1 0.29 -2.2
1,531,485 - Xcc-8004.1594.1 0.29 -1.5
1,531,669 + Xcc-8004.1594.1 0.46 -1.2
1,531,762 + Xcc-8004.1594.1 0.54 -1.8
1,531,763 - Xcc-8004.1594.1 0.54 -2.8
1,531,870 + Xcc-8004.1594.1 0.64 -1.1
1,531,954 + Xcc-8004.1594.1 0.72 -1.7
1,531,954 + Xcc-8004.1594.1 0.72 -1.3
1,531,954 + Xcc-8004.1594.1 0.72 -1.6
1,531,954 + Xcc-8004.1594.1 0.72 -2.2
1,531,954 + Xcc-8004.1594.1 0.72 -1.2
1,531,955 - Xcc-8004.1594.1 0.72 -2.5
1,531,978 + Xcc-8004.1594.1 0.74 -2.2
1,531,978 + Xcc-8004.1594.1 0.74 +0.5
1,531,978 + Xcc-8004.1594.1 0.74 -1.7
1,531,978 + Xcc-8004.1594.1 0.74 +0.5
1,531,979 - Xcc-8004.1594.1 0.74 -2.4
1,532,006 - Xcc-8004.1594.1 0.77 -1.9
1,532,006 - Xcc-8004.1594.1 0.77 -2.5
1,532,156 + -0.9
1,532,157 - -1.8
1,532,341 - -1.5
1,532,413 - Xcc-8004.1596.1 0.13 -2.0
1,532,418 + Xcc-8004.1596.1 0.13 -3.7
1,532,418 + Xcc-8004.1596.1 0.13 -2.3
1,532,419 - Xcc-8004.1596.1 0.13 -2.3
1,532,419 - Xcc-8004.1596.1 0.13 -1.7
1,532,419 - Xcc-8004.1596.1 0.13 -1.4
1,532,583 + Xcc-8004.1596.1 0.27 -1.7
1,532,877 + Xcc-8004.1596.1 0.51 -2.8
1,532,878 - Xcc-8004.1596.1 0.51 -0.5
1,532,878 - Xcc-8004.1596.1 0.51 -1.0
1,533,108 + Xcc-8004.1596.1 0.70 -1.3
1,533,108 + Xcc-8004.1596.1 0.70 -0.8
1,533,108 + Xcc-8004.1596.1 0.70 -2.7
1,533,108 + Xcc-8004.1596.1 0.70 +0.2
1,533,108 + Xcc-8004.1596.1 0.70 +0.8
1,533,109 - Xcc-8004.1596.1 0.70 -3.7
1,533,109 - Xcc-8004.1596.1 0.70 -2.9
1,533,109 - Xcc-8004.1596.1 0.70 -0.5
1,533,241 - Xcc-8004.1596.1 0.81 -3.4
1,533,241 - Xcc-8004.1596.1 0.81 -2.0

Or see this region's nucleotide sequence