Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1568.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,505,577	+		Xcc-8004.1567.1	0.23	-0.3
1,505,577	+		Xcc-8004.1567.1	0.23	-0.8
1,505,578	-		Xcc-8004.1567.1	0.23	-0.6
1,505,578	-		Xcc-8004.1567.1	0.23	+0.2
1,505,578	-		Xcc-8004.1567.1	0.23	-0.2
1,505,578	-		Xcc-8004.1567.1	0.23	-0.5
1,505,578	-		Xcc-8004.1567.1	0.23	+1.0
1,505,628	+		Xcc-8004.1567.1	0.27	-0.4
1,505,628	+		Xcc-8004.1567.1	0.27	-0.9
1,505,629	-		Xcc-8004.1567.1	0.27	+0.3
1,505,629	-		Xcc-8004.1567.1	0.27	-0.2
1,505,904	+		Xcc-8004.1567.1	0.52	-0.5
1,506,078	+		Xcc-8004.1567.1	0.68	-1.1
1,506,422	-				+1.2
1,506,527	-				-1.4
1,506,552	+				+0.2
1,506,553	-				+1.2
1,506,553	-				-0.8
1,506,553	-				+0.8
1,506,697	+		Xcc-8004.1568.1	0.31	-2.1
1,506,698	-		Xcc-8004.1568.1	0.31	+1.2
1,506,698	-		Xcc-8004.1568.1	0.31	-0.9
1,506,784	+		Xcc-8004.1568.1	0.53	-1.4
1,507,190	-				+0.1
1,507,190	-				-0.2
1,507,190	-				+0.2
1,507,522	+				-1.4
1,507,522	+				-0.5