Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1409.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,339,193	+				+0.2
1,339,193	+				+0.7
1,339,193	+				+0.1
1,339,194	-				-2.1
1,339,194	-				-0.2
1,339,585	-		Xcc-8004.1408.1	0.52	-0.3
1,339,586	+		Xcc-8004.1408.1	0.52	+0.3
1,339,586	+		Xcc-8004.1408.1	0.52	+1.3
1,339,586	+		Xcc-8004.1408.1	0.52	-1.1
1,339,586	+		Xcc-8004.1408.1	0.52	-0.3
1,339,586	+		Xcc-8004.1408.1	0.52	+0.1
1,339,586	+		Xcc-8004.1408.1	0.52	-0.1
1,339,586	+		Xcc-8004.1408.1	0.52	-0.1
1,339,586	+		Xcc-8004.1408.1	0.52	-1.3
1,339,587	-		Xcc-8004.1408.1	0.52	+0.7
1,339,587	-		Xcc-8004.1408.1	0.52	+0.9
1,339,587	-		Xcc-8004.1408.1	0.52	+0.1
1,339,587	-		Xcc-8004.1408.1	0.52	-0.6
1,339,587	-		Xcc-8004.1408.1	0.52	-2.1
1,339,587	-		Xcc-8004.1408.1	0.52	+0.4
1,339,587	-		Xcc-8004.1408.1	0.52	+0.4
1,339,681	-		Xcc-8004.1408.1	0.64	+0.8
1,339,681	-		Xcc-8004.1408.1	0.64	-0.5
1,339,851	+		Xcc-8004.1408.1	0.86	-0.2
1,339,851	+		Xcc-8004.1408.1	0.86	+0.6
1,339,851	+		Xcc-8004.1408.1	0.86	+0.5
1,339,851	+		Xcc-8004.1408.1	0.86	+0.5
1,339,851	+		Xcc-8004.1408.1	0.86	+0.8
1,339,851	+		Xcc-8004.1408.1	0.86	-0.7
1,339,851	+		Xcc-8004.1408.1	0.86	+0.1
1,339,851	+		Xcc-8004.1408.1	0.86	+0.1
1,339,851	+		Xcc-8004.1408.1	0.86	+1.1
1,339,851	+		Xcc-8004.1408.1	0.86	+1.2
1,339,851	+		Xcc-8004.1408.1	0.86	-3.1
1,339,851	+		Xcc-8004.1408.1	0.86	-1.5
1,339,851	+		Xcc-8004.1408.1	0.86	-0.4
1,339,851	+		Xcc-8004.1408.1	0.86	-0.3
1,339,851	+		Xcc-8004.1408.1	0.86	+0.1
1,339,852	-		Xcc-8004.1408.1	0.87	-0.5
1,339,852	-		Xcc-8004.1408.1	0.87	+0.1
1,339,852	-		Xcc-8004.1408.1	0.87	+1.1
1,339,852	-		Xcc-8004.1408.1	0.87	+1.6
1,339,852	-		Xcc-8004.1408.1	0.87	+0.4
1,339,852	-		Xcc-8004.1408.1	0.87	+0.3
1,339,852	-		Xcc-8004.1408.1	0.87	-1.6
1,339,852	-		Xcc-8004.1408.1	0.87	-1.5
1,339,852	-		Xcc-8004.1408.1	0.87	-2.0
1,339,852	-		Xcc-8004.1408.1	0.87	-0.4
1,339,852	-		Xcc-8004.1408.1	0.87	+0.2
1,339,852	-		Xcc-8004.1408.1	0.87	+0.5
1,339,852	-		Xcc-8004.1408.1	0.87	+0.2
1,339,852	-		Xcc-8004.1408.1	0.87	+0.1
1,339,852	-		Xcc-8004.1408.1	0.87	-0.3
1,340,006	+				+0.2
1,340,095	+				-0.1
1,340,096	-				-1.3
1,340,096	-				-1.2
1,340,096	-				-2.3
1,340,096	-				-1.4
1,340,096	-				-1.0
1,340,096	-				-0.2
1,340,096	-				-0.7
1,340,096	-				-0.1
1,340,096	-				-0.5
1,340,096	-				-0.3
1,340,147	+				-0.8
1,340,147	+				-0.1
1,340,148	-				-0.2
1,340,520	+		Xcc-8004.1409.1	0.21	-0.5
1,340,520	+		Xcc-8004.1409.1	0.21	-1.0
1,341,722	-		Xcc-8004.1409.1	0.89	-0.3
1,341,722	-		Xcc-8004.1409.1	0.89	-1.1
1,341,722	-		Xcc-8004.1409.1	0.89	-1.8
1,341,722	-		Xcc-8004.1409.1	0.89	-1.0
1,341,733	+		Xcc-8004.1409.1	0.89	-1.7
1,341,738	-		Xcc-8004.1409.1	0.89	-0.4
1,341,995	+				-0.1
1,341,995	+				-0.1
1,341,995	+				-0.6
1,341,995	+				+0.1
1,341,996	-				-0.3
1,341,996	-				+0.1
1,341,996	-				-0.4
1,341,996	-				+0.0
1,341,998	+				-1.0
1,341,998	+				+0.0
1,341,998	+				-0.4
1,341,999	-				-0.1
1,341,999	-				+1.1
1,341,999	-				-0.4
1,342,014	-				-2.4
1,342,242	+				+0.0
1,342,242	+				+0.1
1,342,243	-				-2.4
1,342,337	+				+0.0
1,342,338	-				+0.3
1,342,338	-				+0.1
1,342,381	+				+1.0
1,342,382	-				-0.1
1,342,382	-				+1.2
1,342,382	-				+1.9
1,342,487	-				+0.4
1,342,708	-				-0.3
1,342,725	+				-0.1
1,342,914	+				-0.6
1,342,914	+				+0.6
1,342,915	-				+1.0
1,342,915	-				-0.1