Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1400.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1398.1 and Xcc-8004.1399.1 overlap by 4 nucleotidesXcc-8004.1399.1 and Xcc-8004.1400.1 overlap by 4 nucleotidesXcc-8004.1400.1 and Xcc-8004.1401.1 are separated by 19 nucleotidesXcc-8004.1401.1 and Xcc-8004.1402.1 overlap by 79 nucleotides Xcc-8004.1398.1: Xcc-8004.1398.1 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 1,326,385 to 1,327,431 Xcc-8004.1398.1 Xcc-8004.1399.1: Xcc-8004.1399.1 - Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73), at 1,327,428 to 1,327,997 Xcc-8004.1399.1 Xcc-8004.1400.1: Xcc-8004.1400.1 - Cobalamin synthase (EC 2.7.8.26), at 1,327,994 to 1,328,728 Xcc-8004.1400.1 Xcc-8004.1401.1: Xcc-8004.1401.1 - hypothetical protein, at 1,328,748 to 1,329,728 Xcc-8004.1401.1 Xcc-8004.1402.1: Xcc-8004.1402.1 - Vibrioferrin decarboxylase protein PvsE, at 1,329,650 to 1,330,933 Xcc-8004.1402.1 Position (kb) 1327 1328 1329Strain fitness (log2 ratio) -2 -1 0 1at 1327.129 kb on + strand, within Xcc-8004.1398.1at 1327.129 kb on + strand, within Xcc-8004.1398.1at 1327.129 kb on + strand, within Xcc-8004.1398.1at 1327.129 kb on + strand, within Xcc-8004.1398.1at 1327.130 kb on - strand, within Xcc-8004.1398.1at 1327.130 kb on - strand, within Xcc-8004.1398.1at 1327.130 kb on - strand, within Xcc-8004.1398.1at 1327.130 kb on - strand, within Xcc-8004.1398.1at 1327.130 kb on - strand, within Xcc-8004.1398.1at 1327.131 kb on + strand, within Xcc-8004.1398.1at 1327.660 kb on - strand, within Xcc-8004.1399.1at 1327.684 kb on + strand, within Xcc-8004.1399.1at 1327.830 kb on + strand, within Xcc-8004.1399.1at 1327.830 kb on + strand, within Xcc-8004.1399.1at 1327.830 kb on + strand, within Xcc-8004.1399.1at 1327.830 kb on + strand, within Xcc-8004.1399.1at 1327.830 kb on + strand, within Xcc-8004.1399.1at 1327.830 kb on + strand, within Xcc-8004.1399.1at 1327.831 kb on - strand, within Xcc-8004.1399.1at 1327.831 kb on - strand, within Xcc-8004.1399.1at 1327.831 kb on - strand, within Xcc-8004.1399.1at 1328.462 kb on + strand, within Xcc-8004.1400.1at 1328.462 kb on + strand, within Xcc-8004.1400.1at 1328.462 kb on + strand, within Xcc-8004.1400.1at 1328.717 kb on + strandat 1328.717 kb on + strandat 1328.717 kb on + strandat 1328.717 kb on + strandat 1328.718 kb on - strandat 1328.727 kb on - strandat 1329.094 kb on + strand, within Xcc-8004.1401.1at 1329.094 kb on + strand, within Xcc-8004.1401.1at 1329.111 kb on + strand, within Xcc-8004.1401.1at 1329.111 kb on + strand, within Xcc-8004.1401.1at 1329.558 kb on + strand, within Xcc-8004.1401.1at 1329.558 kb on + strand, within Xcc-8004.1401.1at 1329.559 kb on - strand, within Xcc-8004.1401.1at 1329.559 kb on - strand, within Xcc-8004.1401.1at 1329.559 kb on - strand, within Xcc-8004.1401.1at 1329.645 kb on + strandat 1329.645 kb on + strandat 1329.646 kb on - strandat 1329.646 kb on - strandat 1329.646 kb on - strandat 1329.652 kb on - strandat 1329.652 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,327,129 + Xcc-8004.1398.1 0.71 +0.0
1,327,129 + Xcc-8004.1398.1 0.71 -0.1
1,327,129 + Xcc-8004.1398.1 0.71 +0.0
1,327,129 + Xcc-8004.1398.1 0.71 +1.3
1,327,130 - Xcc-8004.1398.1 0.71 +0.9
1,327,130 - Xcc-8004.1398.1 0.71 +0.0
1,327,130 - Xcc-8004.1398.1 0.71 +0.2
1,327,130 - Xcc-8004.1398.1 0.71 -0.3
1,327,130 - Xcc-8004.1398.1 0.71 -0.0
1,327,131 + Xcc-8004.1398.1 0.71 +0.6
1,327,660 - Xcc-8004.1399.1 0.41 +0.7
1,327,684 + Xcc-8004.1399.1 0.45 -1.5
1,327,830 + Xcc-8004.1399.1 0.71 +1.0
1,327,830 + Xcc-8004.1399.1 0.71 -1.3
1,327,830 + Xcc-8004.1399.1 0.71 -0.8
1,327,830 + Xcc-8004.1399.1 0.71 +1.7
1,327,830 + Xcc-8004.1399.1 0.71 +1.4
1,327,830 + Xcc-8004.1399.1 0.71 -0.1
1,327,831 - Xcc-8004.1399.1 0.71 -1.4
1,327,831 - Xcc-8004.1399.1 0.71 +0.8
1,327,831 - Xcc-8004.1399.1 0.71 -2.0
1,328,462 + Xcc-8004.1400.1 0.64 -2.2
1,328,462 + Xcc-8004.1400.1 0.64 -0.3
1,328,462 + Xcc-8004.1400.1 0.64 -1.4
1,328,717 + +0.2
1,328,717 + +1.0
1,328,717 + +1.1
1,328,717 + +0.1
1,328,718 - +0.1
1,328,727 - -0.7
1,329,094 + Xcc-8004.1401.1 0.35 -0.4
1,329,094 + Xcc-8004.1401.1 0.35 -0.5
1,329,111 + Xcc-8004.1401.1 0.37 +1.5
1,329,111 + Xcc-8004.1401.1 0.37 -1.4
1,329,558 + Xcc-8004.1401.1 0.83 +0.3
1,329,558 + Xcc-8004.1401.1 0.83 +0.1
1,329,559 - Xcc-8004.1401.1 0.83 -0.5
1,329,559 - Xcc-8004.1401.1 0.83 -0.6
1,329,559 - Xcc-8004.1401.1 0.83 -1.3
1,329,645 + +0.3
1,329,645 + -2.2
1,329,646 - +0.1
1,329,646 - -0.4
1,329,646 - -0.2
1,329,652 - +0.1
1,329,652 - +0.1

Or see this region's nucleotide sequence