Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1365.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1363.1 and Xcc-8004.1364.1 are separated by 20 nucleotidesXcc-8004.1364.1 and Xcc-8004.1365.1 overlap by 14 nucleotidesXcc-8004.1365.1 and Xcc-8004.1366.1 are separated by 16 nucleotidesXcc-8004.1366.1 and Xcc-8004.1367.1 are separated by 190 nucleotides Xcc-8004.1363.1: Xcc-8004.1363.1 - COG1496: Uncharacterized conserved protein, at 1,288,650 to 1,289,441 Xcc-8004.1363.1 Xcc-8004.1364.1: Xcc-8004.1364.1 - FIG01209970: hypothetical protein, at 1,289,462 to 1,289,968 Xcc-8004.1364.1 Xcc-8004.1365.1: Xcc-8004.1365.1 - FIG01211058: hypothetical protein, at 1,289,955 to 1,290,374 Xcc-8004.1365.1 Xcc-8004.1366.1: Xcc-8004.1366.1 - hypothetical protein, at 1,290,391 to 1,290,534 Xcc-8004.1366.1 Xcc-8004.1367.1: Xcc-8004.1367.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 1,290,725 to 1,292,593 Xcc-8004.1367.1 Position (kb) 1289 1290 1291Strain fitness (log2 ratio) -2 -1 0 1at 1289.283 kb on + strand, within Xcc-8004.1363.1at 1289.793 kb on - strand, within Xcc-8004.1364.1at 1289.916 kb on + strand, within Xcc-8004.1364.1at 1289.916 kb on + strand, within Xcc-8004.1364.1at 1289.916 kb on + strand, within Xcc-8004.1364.1at 1289.916 kb on + strand, within Xcc-8004.1364.1at 1289.917 kb on - strand, within Xcc-8004.1364.1at 1289.917 kb on - strand, within Xcc-8004.1364.1at 1290.073 kb on - strand, within Xcc-8004.1365.1at 1290.073 kb on - strand, within Xcc-8004.1365.1at 1290.405 kb on - strandat 1290.405 kb on - strandat 1290.405 kb on - strandat 1290.469 kb on - strand, within Xcc-8004.1366.1at 1290.486 kb on + strand, within Xcc-8004.1366.1at 1290.517 kb on + strand, within Xcc-8004.1366.1at 1290.517 kb on + strand, within Xcc-8004.1366.1at 1290.518 kb on - strand, within Xcc-8004.1366.1at 1290.596 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,289,283 + Xcc-8004.1363.1 0.80 -0.5
1,289,793 - Xcc-8004.1364.1 0.65 +0.2
1,289,916 + Xcc-8004.1364.1 0.90 -1.1
1,289,916 + Xcc-8004.1364.1 0.90 +0.7
1,289,916 + Xcc-8004.1364.1 0.90 -0.9
1,289,916 + Xcc-8004.1364.1 0.90 +0.3
1,289,917 - Xcc-8004.1364.1 0.90 -0.1
1,289,917 - Xcc-8004.1364.1 0.90 -0.2
1,290,073 - Xcc-8004.1365.1 0.28 -0.8
1,290,073 - Xcc-8004.1365.1 0.28 -2.5
1,290,405 - +0.0
1,290,405 - -0.8
1,290,405 - +0.1
1,290,469 - Xcc-8004.1366.1 0.54 +0.1
1,290,486 + Xcc-8004.1366.1 0.66 -0.5
1,290,517 + Xcc-8004.1366.1 0.88 -0.0
1,290,517 + Xcc-8004.1366.1 0.88 -0.4
1,290,518 - Xcc-8004.1366.1 0.88 +1.2
1,290,596 + -0.3

Or see this region's nucleotide sequence