Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1328.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,259,061	-				+0.0
1,259,066	+				-0.3
1,259,066	+				-1.2
1,259,067	-				+0.9
1,259,100	+				+1.1
1,259,108	+				+0.4
1,259,109	-				-0.7
1,259,126	+				-1.1
1,259,127	-				+0.2
1,259,127	-				+0.4
1,259,181	-				+0.5
1,259,181	-				+0.1
1,259,181	-				+1.1
1,259,181	-				-0.6
1,259,420	+				-0.9
1,259,486	+		Xcc-8004.1326.1	0.33	+0.1
1,259,486	+		Xcc-8004.1326.1	0.33	-1.4
1,259,486	+		Xcc-8004.1326.1	0.33	+0.0
1,259,486	+		Xcc-8004.1326.1	0.33	+1.2
1,259,487	-		Xcc-8004.1326.1	0.33	+0.3
1,259,487	-		Xcc-8004.1326.1	0.33	-1.2
1,259,783	+				+1.2
1,259,809	+				-0.7
1,259,810	-				-1.8
1,259,863	-				+0.1
1,260,008	+		Xcc-8004.1328.1	0.25	-0.7
1,260,032	+		Xcc-8004.1328.1	0.31	-1.6
1,260,033	-		Xcc-8004.1328.1	0.31	-0.7
1,260,399	+				-0.5
1,260,399	+				+1.1
1,260,530	+		Xcc-8004.1329.1	0.24	+0.5
1,260,530	+		Xcc-8004.1329.1	0.24	-0.4
1,260,686	+		Xcc-8004.1329.1	0.64	+1.7
1,260,686	+		Xcc-8004.1329.1	0.64	+1.3
1,260,686	+		Xcc-8004.1329.1	0.64	-0.1
1,260,686	+		Xcc-8004.1329.1	0.64	-1.4
1,260,770	+		Xcc-8004.1329.1	0.85	+0.0
1,260,771	-		Xcc-8004.1329.1	0.86	+1.3
1,260,771	-		Xcc-8004.1329.1	0.86	+0.9
1,260,773	-		Xcc-8004.1329.1	0.86	-0.1
1,260,816	-				-0.2
1,260,816	-				-0.3
1,260,842	+				-1.2
1,260,861	+				-0.4
1,260,861	+				-0.2
1,260,862	-				-0.6
1,260,862	-				-0.1
1,260,862	-				-0.3
1,260,862	-				+0.5
1,260,977	+				+0.5
1,260,977	+				+1.6
1,260,978	-				+1.7
1,260,978	-				-0.7
1,260,978	-				+0.7
1,261,040	-				+1.4
1,261,077	+				+0.3
1,261,130	+		Xcc-8004.1330.1	0.29	+1.3
1,261,130	+		Xcc-8004.1330.1	0.29	+0.5
1,261,130	+		Xcc-8004.1330.1	0.29	+0.4
1,261,146	+		Xcc-8004.1330.1	0.34	-0.2
1,261,146	+		Xcc-8004.1330.1	0.34	-0.5
1,261,147	-		Xcc-8004.1330.1	0.35	-0.5
1,261,222	-		Xcc-8004.1330.1	0.62	+0.4
1,261,238	-		Xcc-8004.1330.1	0.68	-0.8
1,261,291	+		Xcc-8004.1330.1	0.87	-1.3
1,261,291	+		Xcc-8004.1330.1	0.87	+0.3
1,261,291	+		Xcc-8004.1330.1	0.87	+0.8
1,261,292	-		Xcc-8004.1330.1	0.87	-1.6
1,261,292	-		Xcc-8004.1330.1	0.87	-0.6
1,261,292	-		Xcc-8004.1330.1	0.87	-1.3
1,261,292	-		Xcc-8004.1330.1	0.87	-0.1
1,261,301	+				+0.1