Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.123.1 and Xcc-8004.125.1 are separated by 127 nucleotides Xcc-8004.125.1 and Xcc-8004.127.1 are separated by 268 nucleotides Xcc-8004.127.1 and Xcc-8004.129.1 are separated by 51 nucleotides Xcc-8004.129.1 and Xcc-8004.130.1 are separated by 14 nucleotides
Xcc-8004.123.1: Xcc-8004.123.1 - TldD family protein, Actinobacterial subgroup, at 114,024 to 115,685
Xcc-8004.123.1
Xcc-8004.125.1: Xcc-8004.125.1 - hypothetical protein, at 115,813 to 116,373
Xcc-8004.125.1
Xcc-8004.127.1: Xcc-8004.127.1 - Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11), at 116,642 to 117,658
Xcc-8004.127.1
Xcc-8004.129.1: Xcc-8004.129.1 - hypothetical protein, at 117,710 to 117,820
Xcc-8004.129.1
Xcc-8004.130.1: Xcc-8004.130.1 - hypothetical protein, at 117,835 to 119,037
Xcc-8004.130.1
Position (kb) 116
117
118 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 115.708 kb on - strand at 115.708 kb on - strand at 115.708 kb on - strand at 115.732 kb on + strand at 115.732 kb on + strand at 115.732 kb on + strand at 115.732 kb on + strand at 115.733 kb on - strand at 115.733 kb on - strand at 115.762 kb on + strand at 115.763 kb on - strand at 115.768 kb on + strand at 115.768 kb on + strand at 115.769 kb on - strand at 115.771 kb on + strand at 115.772 kb on - strand at 115.843 kb on + strand at 115.843 kb on + strand at 115.843 kb on + strand at 115.844 kb on - strand at 115.844 kb on - strand at 115.844 kb on - strand at 115.871 kb on + strand, within Xcc-8004.125.1 at 115.901 kb on + strand, within Xcc-8004.125.1 at 115.917 kb on + strand, within Xcc-8004.125.1 at 115.918 kb on - strand, within Xcc-8004.125.1 at 115.918 kb on - strand, within Xcc-8004.125.1 at 115.918 kb on - strand, within Xcc-8004.125.1 at 115.925 kb on + strand, within Xcc-8004.125.1 at 115.929 kb on + strand, within Xcc-8004.125.1 at 115.929 kb on + strand, within Xcc-8004.125.1 at 115.929 kb on + strand, within Xcc-8004.125.1 at 115.930 kb on - strand, within Xcc-8004.125.1 at 115.930 kb on - strand, within Xcc-8004.125.1 at 115.986 kb on - strand, within Xcc-8004.125.1 at 115.986 kb on - strand, within Xcc-8004.125.1 at 116.124 kb on - strand, within Xcc-8004.125.1 at 116.124 kb on - strand, within Xcc-8004.125.1 at 116.138 kb on - strand, within Xcc-8004.125.1 at 116.138 kb on - strand, within Xcc-8004.125.1 at 116.138 kb on - strand, within Xcc-8004.125.1 at 116.138 kb on - strand, within Xcc-8004.125.1 at 116.138 kb on - strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.243 kb on + strand, within Xcc-8004.125.1 at 116.243 kb on + strand, within Xcc-8004.125.1 at 116.243 kb on + strand, within Xcc-8004.125.1 at 116.243 kb on + strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.260 kb on + strand, within Xcc-8004.125.1 at 116.261 kb on - strand, within Xcc-8004.125.1 at 116.330 kb on + strand at 116.330 kb on + strand at 116.330 kb on + strand at 116.331 kb on - strand at 116.368 kb on - strand at 116.378 kb on + strand at 116.378 kb on + strand at 116.378 kb on + strand at 116.378 kb on + strand at 116.378 kb on + strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.381 kb on + strand at 116.381 kb on + strand at 116.381 kb on + strand at 116.382 kb on - strand at 116.382 kb on - strand at 116.382 kb on - strand at 116.385 kb on + strand at 116.385 kb on + strand at 116.385 kb on + strand at 116.386 kb on - strand at 116.386 kb on - strand at 116.386 kb on - strand at 116.386 kb on - strand at 116.386 kb on - strand at 116.386 kb on - strand at 116.386 kb on - strand at 116.392 kb on + strand at 116.392 kb on + strand at 116.393 kb on - strand at 116.393 kb on - strand at 116.393 kb on - strand at 116.393 kb on - strand at 116.399 kb on + strand at 116.400 kb on - strand at 116.406 kb on + strand at 116.406 kb on + strand at 116.407 kb on - strand at 116.407 kb on - strand at 116.413 kb on + strand at 116.413 kb on + strand at 116.413 kb on + strand at 116.414 kb on - strand at 116.414 kb on - strand at 116.414 kb on - strand at 116.414 kb on - strand at 116.432 kb on + strand at 116.433 kb on - strand at 116.451 kb on + strand at 116.451 kb on + strand at 116.451 kb on + strand at 116.452 kb on - strand at 116.452 kb on - strand at 116.550 kb on - strand at 116.594 kb on + strand at 116.594 kb on + strand at 116.594 kb on + strand at 116.594 kb on + strand at 116.594 kb on + strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.613 kb on + strand at 116.614 kb on - strand at 116.614 kb on - strand at 116.618 kb on + strand at 116.619 kb on - strand at 116.878 kb on - strand, within Xcc-8004.127.1 at 116.997 kb on + strand, within Xcc-8004.127.1 at 116.998 kb on - strand, within Xcc-8004.127.1 at 116.998 kb on - strand, within Xcc-8004.127.1 at 117.152 kb on + strand, within Xcc-8004.127.1 at 117.152 kb on + strand, within Xcc-8004.127.1 at 117.175 kb on - strand, within Xcc-8004.127.1 at 117.711 kb on + strand at 117.872 kb on + strand at 117.873 kb on - strand at 117.873 kb on - strand at 117.930 kb on - strand at 117.930 kb on - strand at 117.930 kb on - strand at 117.983 kb on + strand, within Xcc-8004.130.1 at 118.277 kb on + strand, within Xcc-8004.130.1 at 118.277 kb on + strand, within Xcc-8004.130.1 at 118.278 kb on - strand, within Xcc-8004.130.1 at 118.278 kb on - strand, within Xcc-8004.130.1 at 118.298 kb on + strand, within Xcc-8004.130.1 at 118.298 kb on + strand, within Xcc-8004.130.1 at 118.299 kb on - strand, within Xcc-8004.130.1 at 118.299 kb on - strand, within Xcc-8004.130.1 at 118.299 kb on - strand, within Xcc-8004.130.1 at 118.299 kb on - strand, within Xcc-8004.130.1 at 118.316 kb on + strand, within Xcc-8004.130.1 at 118.316 kb on + strand, within Xcc-8004.130.1 at 118.316 kb on + strand, within Xcc-8004.130.1 at 118.316 kb on + strand, within Xcc-8004.130.1 at 118.316 kb on + strand, within Xcc-8004.130.1 at 118.316 kb on + strand, within Xcc-8004.130.1 at 118.317 kb on - strand, within Xcc-8004.130.1 at 118.317 kb on - strand, within Xcc-8004.130.1 at 118.356 kb on - strand, within Xcc-8004.130.1 at 118.391 kb on + strand, within Xcc-8004.130.1 at 118.391 kb on + strand, within Xcc-8004.130.1 at 118.586 kb on + strand, within Xcc-8004.130.1 at 118.586 kb on + strand, within Xcc-8004.130.1 at 118.586 kb on + strand, within Xcc-8004.130.1 at 118.587 kb on - strand, within Xcc-8004.130.1 at 118.587 kb on - strand, within Xcc-8004.130.1 at 118.587 kb on - strand, within Xcc-8004.130.1 at 118.587 kb on - strand, within Xcc-8004.130.1 at 118.587 kb on - strand, within Xcc-8004.130.1 at 118.592 kb on + strand, within Xcc-8004.130.1 at 118.592 kb on + strand, within Xcc-8004.130.1 at 118.592 kb on + strand, within Xcc-8004.130.1 at 118.593 kb on - strand, within Xcc-8004.130.1 at 118.593 kb on - strand, within Xcc-8004.130.1 at 118.593 kb on - strand, within Xcc-8004.130.1 at 118.593 kb on - strand, within Xcc-8004.130.1 at 118.593 kb on - strand, within Xcc-8004.130.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 115,708 - -0.4 115,708 - +0.5 115,708 - -0.3 115,732 + +0.0 115,732 + +0.7 115,732 + -1.4 115,732 + -0.4 115,733 - -0.7 115,733 - -1.3 115,762 + +0.1 115,763 - +0.1 115,768 + -0.1 115,768 + -1.5 115,769 - -0.1 115,771 + -0.7 115,772 - -0.9 115,843 + -0.7 115,843 + +0.2 115,843 + -1.8 115,844 - +0.7 115,844 - -1.0 115,844 - -0.8 115,871 + Xcc-8004.125.1 0.10 -1.1 115,901 + Xcc-8004.125.1 0.16 +0.7 115,917 + Xcc-8004.125.1 0.19 -0.1 115,918 - Xcc-8004.125.1 0.19 +0.7 115,918 - Xcc-8004.125.1 0.19 +0.5 115,918 - Xcc-8004.125.1 0.19 -1.6 115,925 + Xcc-8004.125.1 0.20 +0.6 115,929 + Xcc-8004.125.1 0.21 +0.2 115,929 + Xcc-8004.125.1 0.21 -0.9 115,929 + Xcc-8004.125.1 0.21 -0.0 115,930 - Xcc-8004.125.1 0.21 -1.1 115,930 - Xcc-8004.125.1 0.21 +0.6 115,986 - Xcc-8004.125.1 0.31 -0.9 115,986 - Xcc-8004.125.1 0.31 -0.5 116,124 - Xcc-8004.125.1 0.55 -1.6 116,124 - Xcc-8004.125.1 0.55 -1.5 116,138 - Xcc-8004.125.1 0.58 +0.8 116,138 - Xcc-8004.125.1 0.58 +0.5 116,138 - Xcc-8004.125.1 0.58 -0.3 116,138 - Xcc-8004.125.1 0.58 +0.1 116,138 - Xcc-8004.125.1 0.58 +1.3 116,206 + Xcc-8004.125.1 0.70 +0.3 116,206 + Xcc-8004.125.1 0.70 +1.4 116,206 + Xcc-8004.125.1 0.70 +0.2 116,206 + Xcc-8004.125.1 0.70 -0.5 116,206 + Xcc-8004.125.1 0.70 +2.1 116,206 + Xcc-8004.125.1 0.70 +0.8 116,206 + Xcc-8004.125.1 0.70 +0.4 116,206 + Xcc-8004.125.1 0.70 +1.3 116,206 + Xcc-8004.125.1 0.70 -1.4 116,206 + Xcc-8004.125.1 0.70 -0.7 116,207 - Xcc-8004.125.1 0.70 +0.7 116,207 - Xcc-8004.125.1 0.70 +1.1 116,207 - Xcc-8004.125.1 0.70 -0.5 116,207 - Xcc-8004.125.1 0.70 -0.3 116,207 - Xcc-8004.125.1 0.70 -0.5 116,207 - Xcc-8004.125.1 0.70 -0.2 116,207 - Xcc-8004.125.1 0.70 +1.7 116,207 - Xcc-8004.125.1 0.70 +0.4 116,207 - Xcc-8004.125.1 0.70 +1.5 116,243 + Xcc-8004.125.1 0.77 +0.8 116,243 + Xcc-8004.125.1 0.77 -0.0 116,243 + Xcc-8004.125.1 0.77 -1.0 116,243 + Xcc-8004.125.1 0.77 -0.0 116,244 - Xcc-8004.125.1 0.77 -0.4 116,244 - Xcc-8004.125.1 0.77 +0.7 116,244 - Xcc-8004.125.1 0.77 +0.5 116,244 - Xcc-8004.125.1 0.77 +0.3 116,244 - Xcc-8004.125.1 0.77 -0.7 116,244 - Xcc-8004.125.1 0.77 +0.2 116,244 - Xcc-8004.125.1 0.77 +0.3 116,260 + Xcc-8004.125.1 0.80 -0.4 116,261 - Xcc-8004.125.1 0.80 -0.6 116,330 + -0.2 116,330 + +0.5 116,330 + -0.3 116,331 - -1.4 116,368 - +1.1 116,378 + +3.7 116,378 + -0.5 116,378 + +2.3 116,378 + +0.5 116,378 + -0.7 116,379 - -0.6 116,379 - +1.4 116,379 - -2.3 116,379 - -0.9 116,379 - +0.7 116,379 - -0.1 116,379 - -0.4 116,379 - +1.0 116,381 + +0.1 116,381 + +0.8 116,381 + -0.2 116,382 - -0.9 116,382 - +0.8 116,382 - +0.5 116,385 + -0.3 116,385 + +0.5 116,385 + -0.6 116,386 - -2.8 116,386 - -1.6 116,386 - -0.3 116,386 - -1.1 116,386 - +0.0 116,386 - -1.0 116,386 - -0.7 116,392 + -0.4 116,392 + -0.2 116,393 - -1.8 116,393 - +0.1 116,393 - -0.9 116,393 - +1.9 116,399 + +0.0 116,400 - -1.6 116,406 + +0.4 116,406 + +0.0 116,407 - -0.7 116,407 - +0.4 116,413 + +0.4 116,413 + +0.0 116,413 + -0.2 116,414 - +0.0 116,414 - -0.1 116,414 - -1.6 116,414 - -0.1 116,432 + +1.3 116,433 - +0.2 116,451 + -1.0 116,451 + +1.4 116,451 + -2.3 116,452 - +0.8 116,452 - -1.1 116,550 - -0.9 116,594 + +0.5 116,594 + +0.9 116,594 + -0.3 116,594 + +0.2 116,594 + +0.7 116,595 - -2.2 116,595 - -2.6 116,595 - -1.4 116,595 - +0.8 116,595 - +0.2 116,595 - -1.1 116,595 - -1.1 116,595 - -1.1 116,613 + -0.4 116,614 - -0.4 116,614 - -0.1 116,618 + -1.8 116,619 - -0.8 116,878 - Xcc-8004.127.1 0.23 -0.3 116,997 + Xcc-8004.127.1 0.35 -1.6 116,998 - Xcc-8004.127.1 0.35 -0.1 116,998 - Xcc-8004.127.1 0.35 -2.3 117,152 + Xcc-8004.127.1 0.50 +0.1 117,152 + Xcc-8004.127.1 0.50 -1.5 117,175 - Xcc-8004.127.1 0.52 -0.6 117,711 + -0.1 117,872 + -1.9 117,873 - -1.4 117,873 - -2.2 117,930 - -1.8 117,930 - +1.4 117,930 - -2.3 117,983 + Xcc-8004.130.1 0.12 +1.1 118,277 + Xcc-8004.130.1 0.37 -1.5 118,277 + Xcc-8004.130.1 0.37 -0.3 118,278 - Xcc-8004.130.1 0.37 -1.1 118,278 - Xcc-8004.130.1 0.37 -1.3 118,298 + Xcc-8004.130.1 0.38 -0.3 118,298 + Xcc-8004.130.1 0.38 -0.9 118,299 - Xcc-8004.130.1 0.39 -2.4 118,299 - Xcc-8004.130.1 0.39 -0.8 118,299 - Xcc-8004.130.1 0.39 -1.8 118,299 - Xcc-8004.130.1 0.39 -1.1 118,316 + Xcc-8004.130.1 0.40 -0.9 118,316 + Xcc-8004.130.1 0.40 -0.6 118,316 + Xcc-8004.130.1 0.40 +0.1 118,316 + Xcc-8004.130.1 0.40 -1.9 118,316 + Xcc-8004.130.1 0.40 -1.9 118,316 + Xcc-8004.130.1 0.40 -1.5 118,317 - Xcc-8004.130.1 0.40 -2.8 118,317 - Xcc-8004.130.1 0.40 -3.0 118,356 - Xcc-8004.130.1 0.43 -2.3 118,391 + Xcc-8004.130.1 0.46 -0.4 118,391 + Xcc-8004.130.1 0.46 -2.5 118,586 + Xcc-8004.130.1 0.62 -0.9 118,586 + Xcc-8004.130.1 0.62 -1.5 118,586 + Xcc-8004.130.1 0.62 +0.7 118,587 - Xcc-8004.130.1 0.63 -0.3 118,587 - Xcc-8004.130.1 0.63 -1.0 118,587 - Xcc-8004.130.1 0.63 -2.3 118,587 - Xcc-8004.130.1 0.63 -1.9 118,587 - Xcc-8004.130.1 0.63 -2.6 118,592 + Xcc-8004.130.1 0.63 -1.8 118,592 + Xcc-8004.130.1 0.63 -1.8 118,592 + Xcc-8004.130.1 0.63 -0.6 118,593 - Xcc-8004.130.1 0.63 -2.1 118,593 - Xcc-8004.130.1 0.63 -0.6 118,593 - Xcc-8004.130.1 0.63 -1.0 118,593 - Xcc-8004.130.1 0.63 -0.3 118,593 - Xcc-8004.130.1 0.63 -2.3
Or see this region's nucleotide sequence