Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1260.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1259.1 and Xcc-8004.1260.1 overlap by 1 nucleotidesXcc-8004.1260.1 and Xcc-8004.1261.1 are separated by 262 nucleotides Xcc-8004.1259.1: Xcc-8004.1259.1 - Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4), at 1,192,574 to 1,193,638 Xcc-8004.1259.1 Xcc-8004.1260.1: Xcc-8004.1260.1 - Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25), at 1,193,638 to 1,195,614 Xcc-8004.1260.1 Xcc-8004.1261.1: Xcc-8004.1261.1 - Membrane fusion protein of RND family multidrug efflux pump, at 1,195,877 to 1,196,962 Xcc-8004.1261.1 Position (kb) 1193 1194 1195 1196Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1192.643 kb on + strandat 1192.643 kb on + strandat 1192.643 kb on + strandat 1192.643 kb on + strandat 1192.644 kb on - strandat 1192.830 kb on - strand, within Xcc-8004.1259.1at 1192.922 kb on - strand, within Xcc-8004.1259.1at 1193.241 kb on - strand, within Xcc-8004.1259.1at 1193.241 kb on - strand, within Xcc-8004.1259.1at 1193.241 kb on - strand, within Xcc-8004.1259.1at 1193.241 kb on - strand, within Xcc-8004.1259.1at 1193.318 kb on + strand, within Xcc-8004.1259.1at 1193.318 kb on + strand, within Xcc-8004.1259.1at 1193.318 kb on + strand, within Xcc-8004.1259.1at 1193.318 kb on + strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.324 kb on + strand, within Xcc-8004.1259.1at 1193.325 kb on - strand, within Xcc-8004.1259.1at 1193.354 kb on + strand, within Xcc-8004.1259.1at 1193.355 kb on - strand, within Xcc-8004.1259.1at 1193.355 kb on - strand, within Xcc-8004.1259.1at 1193.355 kb on - strand, within Xcc-8004.1259.1at 1193.483 kb on + strand, within Xcc-8004.1259.1at 1193.630 kb on + strandat 1193.631 kb on - strandat 1193.764 kb on + strandat 1193.764 kb on + strandat 1193.765 kb on - strandat 1193.765 kb on - strandat 1193.858 kb on - strand, within Xcc-8004.1260.1at 1193.944 kb on + strand, within Xcc-8004.1260.1at 1193.945 kb on - strand, within Xcc-8004.1260.1at 1193.945 kb on - strand, within Xcc-8004.1260.1at 1194.070 kb on + strand, within Xcc-8004.1260.1at 1194.070 kb on + strand, within Xcc-8004.1260.1at 1194.070 kb on + strand, within Xcc-8004.1260.1at 1194.070 kb on + strand, within Xcc-8004.1260.1at 1194.081 kb on + strand, within Xcc-8004.1260.1at 1194.169 kb on + strand, within Xcc-8004.1260.1at 1194.169 kb on + strand, within Xcc-8004.1260.1at 1194.169 kb on + strand, within Xcc-8004.1260.1at 1194.169 kb on + strand, within Xcc-8004.1260.1at 1194.170 kb on - strand, within Xcc-8004.1260.1at 1194.170 kb on - strand, within Xcc-8004.1260.1at 1194.170 kb on - strand, within Xcc-8004.1260.1at 1194.170 kb on - strand, within Xcc-8004.1260.1at 1194.170 kb on - strand, within Xcc-8004.1260.1at 1194.236 kb on - strand, within Xcc-8004.1260.1at 1194.271 kb on + strand, within Xcc-8004.1260.1at 1194.271 kb on + strand, within Xcc-8004.1260.1at 1194.524 kb on + strand, within Xcc-8004.1260.1at 1194.524 kb on + strand, within Xcc-8004.1260.1at 1194.525 kb on - strand, within Xcc-8004.1260.1at 1194.525 kb on - strand, within Xcc-8004.1260.1at 1194.892 kb on + strand, within Xcc-8004.1260.1at 1194.893 kb on - strand, within Xcc-8004.1260.1at 1194.893 kb on - strand, within Xcc-8004.1260.1at 1194.934 kb on + strand, within Xcc-8004.1260.1at 1195.186 kb on + strand, within Xcc-8004.1260.1at 1195.187 kb on - strand, within Xcc-8004.1260.1at 1195.187 kb on - strand, within Xcc-8004.1260.1at 1195.459 kb on + strandat 1195.513 kb on + strandat 1195.514 kb on - strandat 1195.565 kb on + strandat 1195.565 kb on + strandat 1195.566 kb on - strandat 1195.566 kb on - strandat 1195.566 kb on - strandat 1195.566 kb on - strandat 1195.594 kb on + strandat 1195.595 kb on - strandat 1195.595 kb on - strandat 1195.595 kb on - strandat 1195.636 kb on + strandat 1195.684 kb on + strandat 1195.684 kb on + strandat 1195.684 kb on + strandat 1195.684 kb on + strandat 1195.684 kb on + strandat 1195.685 kb on - strandat 1195.692 kb on + strandat 1195.844 kb on + strandat 1195.845 kb on - strandat 1195.858 kb on - strandat 1195.858 kb on - strandat 1196.223 kb on - strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,192,643 + -3.2
1,192,643 + -1.4
1,192,643 + -1.4
1,192,643 + -2.3
1,192,644 - -2.4
1,192,830 - Xcc-8004.1259.1 0.24 -3.8
1,192,922 - Xcc-8004.1259.1 0.33 -1.7
1,193,241 - Xcc-8004.1259.1 0.63 -2.1
1,193,241 - Xcc-8004.1259.1 0.63 -0.9
1,193,241 - Xcc-8004.1259.1 0.63 -3.2
1,193,241 - Xcc-8004.1259.1 0.63 -0.3
1,193,318 + Xcc-8004.1259.1 0.70 -2.5
1,193,318 + Xcc-8004.1259.1 0.70 -2.0
1,193,318 + Xcc-8004.1259.1 0.70 -3.2
1,193,318 + Xcc-8004.1259.1 0.70 -1.1
1,193,319 - Xcc-8004.1259.1 0.70 -4.1
1,193,319 - Xcc-8004.1259.1 0.70 -1.0
1,193,319 - Xcc-8004.1259.1 0.70 -1.4
1,193,319 - Xcc-8004.1259.1 0.70 -2.0
1,193,319 - Xcc-8004.1259.1 0.70 -0.7
1,193,319 - Xcc-8004.1259.1 0.70 -3.8
1,193,324 + Xcc-8004.1259.1 0.70 -0.8
1,193,325 - Xcc-8004.1259.1 0.71 -1.1
1,193,354 + Xcc-8004.1259.1 0.73 -3.4
1,193,355 - Xcc-8004.1259.1 0.73 -2.3
1,193,355 - Xcc-8004.1259.1 0.73 -1.7
1,193,355 - Xcc-8004.1259.1 0.73 -1.8
1,193,483 + Xcc-8004.1259.1 0.85 -1.3
1,193,630 + -2.4
1,193,631 - -1.8
1,193,764 + -2.5
1,193,764 + +0.2
1,193,765 - -1.1
1,193,765 - -2.9
1,193,858 - Xcc-8004.1260.1 0.11 +0.2
1,193,944 + Xcc-8004.1260.1 0.15 -1.1
1,193,945 - Xcc-8004.1260.1 0.16 -0.4
1,193,945 - Xcc-8004.1260.1 0.16 -2.9
1,194,070 + Xcc-8004.1260.1 0.22 -2.7
1,194,070 + Xcc-8004.1260.1 0.22 -2.8
1,194,070 + Xcc-8004.1260.1 0.22 -1.6
1,194,070 + Xcc-8004.1260.1 0.22 +0.2
1,194,081 + Xcc-8004.1260.1 0.22 -3.2
1,194,169 + Xcc-8004.1260.1 0.27 -4.3
1,194,169 + Xcc-8004.1260.1 0.27 -2.0
1,194,169 + Xcc-8004.1260.1 0.27 -3.0
1,194,169 + Xcc-8004.1260.1 0.27 -1.1
1,194,170 - Xcc-8004.1260.1 0.27 -2.4
1,194,170 - Xcc-8004.1260.1 0.27 -2.1
1,194,170 - Xcc-8004.1260.1 0.27 -1.4
1,194,170 - Xcc-8004.1260.1 0.27 -2.9
1,194,170 - Xcc-8004.1260.1 0.27 -0.7
1,194,236 - Xcc-8004.1260.1 0.30 -1.3
1,194,271 + Xcc-8004.1260.1 0.32 -3.5
1,194,271 + Xcc-8004.1260.1 0.32 -1.8
1,194,524 + Xcc-8004.1260.1 0.45 -2.9
1,194,524 + Xcc-8004.1260.1 0.45 -2.8
1,194,525 - Xcc-8004.1260.1 0.45 -0.8
1,194,525 - Xcc-8004.1260.1 0.45 -1.1
1,194,892 + Xcc-8004.1260.1 0.63 -1.4
1,194,893 - Xcc-8004.1260.1 0.63 -0.5
1,194,893 - Xcc-8004.1260.1 0.63 -1.1
1,194,934 + Xcc-8004.1260.1 0.66 -1.4
1,195,186 + Xcc-8004.1260.1 0.78 -1.7
1,195,187 - Xcc-8004.1260.1 0.78 -1.1
1,195,187 - Xcc-8004.1260.1 0.78 -1.2
1,195,459 + -1.2
1,195,513 + -2.2
1,195,514 - -3.0
1,195,565 + -2.2
1,195,565 + -2.2
1,195,566 - -1.6
1,195,566 - -3.6
1,195,566 - -3.3
1,195,566 - -2.4
1,195,594 + -3.3
1,195,595 - -2.2
1,195,595 - -1.2
1,195,595 - -0.6
1,195,636 + +0.3
1,195,684 + -0.7
1,195,684 + -0.6
1,195,684 + -0.9
1,195,684 + +0.9
1,195,684 + +0.2
1,195,685 - -0.4
1,195,692 + +1.6
1,195,844 + +0.7
1,195,845 - +0.7
1,195,858 - +0.7
1,195,858 - -0.1
1,196,223 - Xcc-8004.1261.1 0.32 -0.1
1,196,456 + Xcc-8004.1261.1 0.53 +0.2
1,196,456 + Xcc-8004.1261.1 0.53 +0.2
1,196,456 + Xcc-8004.1261.1 0.53 +0.4
1,196,456 + Xcc-8004.1261.1 0.53 +0.4
1,196,456 + Xcc-8004.1261.1 0.53 -0.6
1,196,456 + Xcc-8004.1261.1 0.53 +0.5
1,196,456 + Xcc-8004.1261.1 0.53 -0.8
1,196,456 + Xcc-8004.1261.1 0.53 +0.7
1,196,456 + Xcc-8004.1261.1 0.53 -1.1
1,196,456 + Xcc-8004.1261.1 0.53 -0.8
1,196,457 - Xcc-8004.1261.1 0.53 +1.2
1,196,457 - Xcc-8004.1261.1 0.53 +0.2
1,196,457 - Xcc-8004.1261.1 0.53 -0.3
1,196,457 - Xcc-8004.1261.1 0.53 -0.6
1,196,457 - Xcc-8004.1261.1 0.53 -0.3
1,196,457 - Xcc-8004.1261.1 0.53 +0.5
1,196,457 - Xcc-8004.1261.1 0.53 +0.3
1,196,457 - Xcc-8004.1261.1 0.53 -0.5
1,196,457 - Xcc-8004.1261.1 0.53 -0.3
1,196,457 - Xcc-8004.1261.1 0.53 +0.2

Or see this region's nucleotide sequence