Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1259.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1258.1 and Xcc-8004.1259.1 are separated by 22 nucleotidesXcc-8004.1259.1 and Xcc-8004.1260.1 overlap by 1 nucleotides Xcc-8004.1258.1: Xcc-8004.1258.1 - Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2), at 1,190,704 to 1,192,551 Xcc-8004.1258.1 Xcc-8004.1259.1: Xcc-8004.1259.1 - Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4), at 1,192,574 to 1,193,638 Xcc-8004.1259.1 Xcc-8004.1260.1: Xcc-8004.1260.1 - Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25), at 1,193,638 to 1,195,614 Xcc-8004.1260.1 Position (kb) 1192 1193 1194Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1191.695 kb on + strand, within Xcc-8004.1258.1at 1191.758 kb on + strand, within Xcc-8004.1258.1at 1191.758 kb on + strand, within Xcc-8004.1258.1at 1191.759 kb on - strand, within Xcc-8004.1258.1at 1191.759 kb on - strand, within Xcc-8004.1258.1at 1191.759 kb on - strand, within Xcc-8004.1258.1at 1192.061 kb on + strand, within Xcc-8004.1258.1at 1192.062 kb on - strand, within Xcc-8004.1258.1at 1192.062 kb on - strand, within Xcc-8004.1258.1at 1192.062 kb on - strand, within Xcc-8004.1258.1at 1192.091 kb on + strand, within Xcc-8004.1258.1at 1192.091 kb on + strand, within Xcc-8004.1258.1at 1192.092 kb on - strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.331 kb on + strand, within Xcc-8004.1258.1at 1192.331 kb on + strand, within Xcc-8004.1258.1at 1192.332 kb on - strand, within Xcc-8004.1258.1at 1192.434 kb on + strandat 1192.434 kb on + strandat 1192.435 kb on - strandat 1192.631 kb on - strandat 1192.643 kb on + strandat 1192.643 kb on + strandat 1192.643 kb on + strandat 1192.643 kb on + strandat 1192.644 kb on - strandat 1192.830 kb on - strand, within Xcc-8004.1259.1at 1192.922 kb on - strand, within Xcc-8004.1259.1at 1193.241 kb on - strand, within Xcc-8004.1259.1at 1193.241 kb on - strand, within Xcc-8004.1259.1at 1193.241 kb on - strand, within Xcc-8004.1259.1at 1193.241 kb on - strand, within Xcc-8004.1259.1at 1193.318 kb on + strand, within Xcc-8004.1259.1at 1193.318 kb on + strand, within Xcc-8004.1259.1at 1193.318 kb on + strand, within Xcc-8004.1259.1at 1193.318 kb on + strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.324 kb on + strand, within Xcc-8004.1259.1at 1193.325 kb on - strand, within Xcc-8004.1259.1at 1193.354 kb on + strand, within Xcc-8004.1259.1at 1193.355 kb on - strand, within Xcc-8004.1259.1at 1193.355 kb on - strand, within Xcc-8004.1259.1at 1193.355 kb on - strand, within Xcc-8004.1259.1at 1193.483 kb on + strand, within Xcc-8004.1259.1at 1193.630 kb on + strandat 1193.631 kb on - strandat 1193.764 kb on + strandat 1193.764 kb on + strandat 1193.765 kb on - strandat 1193.765 kb on - strandat 1193.858 kb on - strand, within Xcc-8004.1260.1at 1193.944 kb on + strand, within Xcc-8004.1260.1at 1193.945 kb on - strand, within Xcc-8004.1260.1at 1193.945 kb on - strand, within Xcc-8004.1260.1at 1194.070 kb on + strand, within Xcc-8004.1260.1at 1194.070 kb on + strand, within Xcc-8004.1260.1at 1194.070 kb on + strand, within Xcc-8004.1260.1at 1194.070 kb on + strand, within Xcc-8004.1260.1at 1194.081 kb on + strand, within Xcc-8004.1260.1at 1194.169 kb on + strand, within Xcc-8004.1260.1at 1194.169 kb on + strand, within Xcc-8004.1260.1at 1194.169 kb on + strand, within Xcc-8004.1260.1at 1194.169 kb on + strand, within Xcc-8004.1260.1at 1194.170 kb on - strand, within Xcc-8004.1260.1at 1194.170 kb on - strand, within Xcc-8004.1260.1at 1194.170 kb on - strand, within Xcc-8004.1260.1at 1194.170 kb on - strand, within Xcc-8004.1260.1at 1194.170 kb on - strand, within Xcc-8004.1260.1at 1194.236 kb on - strand, within Xcc-8004.1260.1at 1194.271 kb on + strand, within Xcc-8004.1260.1at 1194.271 kb on + strand, within Xcc-8004.1260.1at 1194.524 kb on + strand, within Xcc-8004.1260.1at 1194.524 kb on + strand, within Xcc-8004.1260.1at 1194.525 kb on - strand, within Xcc-8004.1260.1at 1194.525 kb on - strand, within Xcc-8004.1260.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,191,695 + Xcc-8004.1258.1 0.54 -1.3
1,191,758 + Xcc-8004.1258.1 0.57 -0.7
1,191,758 + Xcc-8004.1258.1 0.57 -2.7
1,191,759 - Xcc-8004.1258.1 0.57 -2.2
1,191,759 - Xcc-8004.1258.1 0.57 -3.0
1,191,759 - Xcc-8004.1258.1 0.57 -2.6
1,192,061 + Xcc-8004.1258.1 0.73 -2.4
1,192,062 - Xcc-8004.1258.1 0.73 -3.3
1,192,062 - Xcc-8004.1258.1 0.73 -2.9
1,192,062 - Xcc-8004.1258.1 0.73 -2.7
1,192,091 + Xcc-8004.1258.1 0.75 -2.0
1,192,091 + Xcc-8004.1258.1 0.75 -0.5
1,192,092 - Xcc-8004.1258.1 0.75 -0.3
1,192,196 + Xcc-8004.1258.1 0.81 -2.9
1,192,196 + Xcc-8004.1258.1 0.81 -1.5
1,192,196 + Xcc-8004.1258.1 0.81 -2.4
1,192,196 + Xcc-8004.1258.1 0.81 -0.4
1,192,196 + Xcc-8004.1258.1 0.81 -3.0
1,192,196 + Xcc-8004.1258.1 0.81 -1.5
1,192,196 + Xcc-8004.1258.1 0.81 -3.4
1,192,196 + Xcc-8004.1258.1 0.81 -2.0
1,192,196 + Xcc-8004.1258.1 0.81 -0.7
1,192,197 - Xcc-8004.1258.1 0.81 -1.1
1,192,197 - Xcc-8004.1258.1 0.81 -4.0
1,192,197 - Xcc-8004.1258.1 0.81 -2.8
1,192,197 - Xcc-8004.1258.1 0.81 -2.8
1,192,197 - Xcc-8004.1258.1 0.81 -3.9
1,192,197 - Xcc-8004.1258.1 0.81 -3.0
1,192,197 - Xcc-8004.1258.1 0.81 -2.5
1,192,197 - Xcc-8004.1258.1 0.81 -2.6
1,192,197 - Xcc-8004.1258.1 0.81 -0.6
1,192,197 - Xcc-8004.1258.1 0.81 -2.3
1,192,331 + Xcc-8004.1258.1 0.88 -2.3
1,192,331 + Xcc-8004.1258.1 0.88 -1.8
1,192,332 - Xcc-8004.1258.1 0.88 -0.5
1,192,434 + -1.0
1,192,434 + -2.1
1,192,435 - -2.7
1,192,631 - -1.4
1,192,643 + -3.2
1,192,643 + -1.4
1,192,643 + -1.4
1,192,643 + -2.3
1,192,644 - -2.4
1,192,830 - Xcc-8004.1259.1 0.24 -3.8
1,192,922 - Xcc-8004.1259.1 0.33 -1.7
1,193,241 - Xcc-8004.1259.1 0.63 -2.1
1,193,241 - Xcc-8004.1259.1 0.63 -0.9
1,193,241 - Xcc-8004.1259.1 0.63 -3.2
1,193,241 - Xcc-8004.1259.1 0.63 -0.3
1,193,318 + Xcc-8004.1259.1 0.70 -2.5
1,193,318 + Xcc-8004.1259.1 0.70 -2.0
1,193,318 + Xcc-8004.1259.1 0.70 -3.2
1,193,318 + Xcc-8004.1259.1 0.70 -1.1
1,193,319 - Xcc-8004.1259.1 0.70 -4.1
1,193,319 - Xcc-8004.1259.1 0.70 -1.0
1,193,319 - Xcc-8004.1259.1 0.70 -1.4
1,193,319 - Xcc-8004.1259.1 0.70 -2.0
1,193,319 - Xcc-8004.1259.1 0.70 -0.7
1,193,319 - Xcc-8004.1259.1 0.70 -3.8
1,193,324 + Xcc-8004.1259.1 0.70 -0.8
1,193,325 - Xcc-8004.1259.1 0.71 -1.1
1,193,354 + Xcc-8004.1259.1 0.73 -3.4
1,193,355 - Xcc-8004.1259.1 0.73 -2.3
1,193,355 - Xcc-8004.1259.1 0.73 -1.7
1,193,355 - Xcc-8004.1259.1 0.73 -1.8
1,193,483 + Xcc-8004.1259.1 0.85 -1.3
1,193,630 + -2.4
1,193,631 - -1.8
1,193,764 + -2.5
1,193,764 + +0.2
1,193,765 - -1.1
1,193,765 - -2.9
1,193,858 - Xcc-8004.1260.1 0.11 +0.2
1,193,944 + Xcc-8004.1260.1 0.15 -1.1
1,193,945 - Xcc-8004.1260.1 0.16 -0.4
1,193,945 - Xcc-8004.1260.1 0.16 -2.9
1,194,070 + Xcc-8004.1260.1 0.22 -2.7
1,194,070 + Xcc-8004.1260.1 0.22 -2.8
1,194,070 + Xcc-8004.1260.1 0.22 -1.6
1,194,070 + Xcc-8004.1260.1 0.22 +0.2
1,194,081 + Xcc-8004.1260.1 0.22 -3.2
1,194,169 + Xcc-8004.1260.1 0.27 -4.3
1,194,169 + Xcc-8004.1260.1 0.27 -2.0
1,194,169 + Xcc-8004.1260.1 0.27 -3.0
1,194,169 + Xcc-8004.1260.1 0.27 -1.1
1,194,170 - Xcc-8004.1260.1 0.27 -2.4
1,194,170 - Xcc-8004.1260.1 0.27 -2.1
1,194,170 - Xcc-8004.1260.1 0.27 -1.4
1,194,170 - Xcc-8004.1260.1 0.27 -2.9
1,194,170 - Xcc-8004.1260.1 0.27 -0.7
1,194,236 - Xcc-8004.1260.1 0.30 -1.3
1,194,271 + Xcc-8004.1260.1 0.32 -3.5
1,194,271 + Xcc-8004.1260.1 0.32 -1.8
1,194,524 + Xcc-8004.1260.1 0.45 -2.9
1,194,524 + Xcc-8004.1260.1 0.45 -2.8
1,194,525 - Xcc-8004.1260.1 0.45 -0.8
1,194,525 - Xcc-8004.1260.1 0.45 -1.1

Or see this region's nucleotide sequence