Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1258.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1257.1 and Xcc-8004.1258.1 overlap by 20 nucleotidesXcc-8004.1258.1 and Xcc-8004.1259.1 are separated by 22 nucleotides Xcc-8004.1257.1: Xcc-8004.1257.1 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 1,188,882 to 1,190,723 Xcc-8004.1257.1 Xcc-8004.1258.1: Xcc-8004.1258.1 - Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2), at 1,190,704 to 1,192,551 Xcc-8004.1258.1 Xcc-8004.1259.1: Xcc-8004.1259.1 - Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4), at 1,192,574 to 1,193,638 Xcc-8004.1259.1 Position (kb) 1190 1191 1192 1193Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1189.719 kb on - strand, within Xcc-8004.1257.1at 1189.879 kb on + strand, within Xcc-8004.1257.1at 1190.066 kb on - strand, within Xcc-8004.1257.1at 1190.066 kb on - strand, within Xcc-8004.1257.1at 1190.068 kb on + strand, within Xcc-8004.1257.1at 1190.069 kb on - strand, within Xcc-8004.1257.1at 1190.069 kb on - strand, within Xcc-8004.1257.1at 1190.069 kb on - strand, within Xcc-8004.1257.1at 1190.119 kb on + strand, within Xcc-8004.1257.1at 1190.119 kb on + strand, within Xcc-8004.1257.1at 1190.119 kb on + strand, within Xcc-8004.1257.1at 1190.120 kb on - strand, within Xcc-8004.1257.1at 1190.311 kb on + strand, within Xcc-8004.1257.1at 1190.395 kb on + strand, within Xcc-8004.1257.1at 1190.395 kb on + strand, within Xcc-8004.1257.1at 1190.456 kb on - strand, within Xcc-8004.1257.1at 1190.467 kb on + strand, within Xcc-8004.1257.1at 1190.468 kb on - strand, within Xcc-8004.1257.1at 1190.468 kb on - strand, within Xcc-8004.1257.1at 1190.468 kb on - strand, within Xcc-8004.1257.1at 1190.705 kb on + strandat 1190.705 kb on + strandat 1190.706 kb on - strandat 1190.706 kb on - strandat 1190.706 kb on - strandat 1190.706 kb on - strandat 1190.708 kb on + strandat 1190.708 kb on + strandat 1190.708 kb on + strandat 1190.709 kb on - strandat 1190.709 kb on - strandat 1190.709 kb on - strandat 1190.724 kb on - strandat 1190.753 kb on + strandat 1190.852 kb on + strandat 1190.852 kb on + strandat 1190.852 kb on + strandat 1190.852 kb on + strandat 1190.852 kb on + strandat 1190.852 kb on + strandat 1190.852 kb on + strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.883 kb on - strandat 1190.883 kb on - strandat 1190.883 kb on - strandat 1190.922 kb on - strand, within Xcc-8004.1258.1at 1190.922 kb on - strand, within Xcc-8004.1258.1at 1190.922 kb on - strand, within Xcc-8004.1258.1at 1191.008 kb on + strand, within Xcc-8004.1258.1at 1191.008 kb on + strand, within Xcc-8004.1258.1at 1191.009 kb on - strand, within Xcc-8004.1258.1at 1191.009 kb on - strand, within Xcc-8004.1258.1at 1191.187 kb on - strand, within Xcc-8004.1258.1at 1191.188 kb on + strand, within Xcc-8004.1258.1at 1191.188 kb on + strand, within Xcc-8004.1258.1at 1191.188 kb on + strand, within Xcc-8004.1258.1at 1191.188 kb on + strand, within Xcc-8004.1258.1at 1191.188 kb on + strand, within Xcc-8004.1258.1at 1191.189 kb on - strand, within Xcc-8004.1258.1at 1191.189 kb on - strand, within Xcc-8004.1258.1at 1191.189 kb on - strand, within Xcc-8004.1258.1at 1191.189 kb on - strand, within Xcc-8004.1258.1at 1191.189 kb on - strand, within Xcc-8004.1258.1at 1191.269 kb on + strand, within Xcc-8004.1258.1at 1191.270 kb on - strand, within Xcc-8004.1258.1at 1191.295 kb on + strand, within Xcc-8004.1258.1at 1191.295 kb on + strand, within Xcc-8004.1258.1at 1191.296 kb on - strand, within Xcc-8004.1258.1at 1191.296 kb on - strand, within Xcc-8004.1258.1at 1191.296 kb on - strand, within Xcc-8004.1258.1at 1191.296 kb on - strand, within Xcc-8004.1258.1at 1191.335 kb on + strand, within Xcc-8004.1258.1at 1191.335 kb on + strand, within Xcc-8004.1258.1at 1191.336 kb on - strand, within Xcc-8004.1258.1at 1191.336 kb on - strand, within Xcc-8004.1258.1at 1191.336 kb on - strand, within Xcc-8004.1258.1at 1191.695 kb on + strand, within Xcc-8004.1258.1at 1191.758 kb on + strand, within Xcc-8004.1258.1at 1191.758 kb on + strand, within Xcc-8004.1258.1at 1191.759 kb on - strand, within Xcc-8004.1258.1at 1191.759 kb on - strand, within Xcc-8004.1258.1at 1191.759 kb on - strand, within Xcc-8004.1258.1at 1192.061 kb on + strand, within Xcc-8004.1258.1at 1192.062 kb on - strand, within Xcc-8004.1258.1at 1192.062 kb on - strand, within Xcc-8004.1258.1at 1192.062 kb on - strand, within Xcc-8004.1258.1at 1192.091 kb on + strand, within Xcc-8004.1258.1at 1192.091 kb on + strand, within Xcc-8004.1258.1at 1192.092 kb on - strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.196 kb on + strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.197 kb on - strand, within Xcc-8004.1258.1at 1192.331 kb on + strand, within Xcc-8004.1258.1at 1192.331 kb on + strand, within Xcc-8004.1258.1at 1192.332 kb on - strand, within Xcc-8004.1258.1at 1192.434 kb on + strandat 1192.434 kb on + strandat 1192.435 kb on - strandat 1192.631 kb on - strandat 1192.643 kb on + strandat 1192.643 kb on + strandat 1192.643 kb on + strandat 1192.643 kb on + strandat 1192.644 kb on - strandat 1192.830 kb on - strand, within Xcc-8004.1259.1at 1192.922 kb on - strand, within Xcc-8004.1259.1at 1193.241 kb on - strand, within Xcc-8004.1259.1at 1193.241 kb on - strand, within Xcc-8004.1259.1at 1193.241 kb on - strand, within Xcc-8004.1259.1at 1193.241 kb on - strand, within Xcc-8004.1259.1at 1193.318 kb on + strand, within Xcc-8004.1259.1at 1193.318 kb on + strand, within Xcc-8004.1259.1at 1193.318 kb on + strand, within Xcc-8004.1259.1at 1193.318 kb on + strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.319 kb on - strand, within Xcc-8004.1259.1at 1193.324 kb on + strand, within Xcc-8004.1259.1at 1193.325 kb on - strand, within Xcc-8004.1259.1at 1193.354 kb on + strand, within Xcc-8004.1259.1at 1193.355 kb on - strand, within Xcc-8004.1259.1at 1193.355 kb on - strand, within Xcc-8004.1259.1at 1193.355 kb on - strand, within Xcc-8004.1259.1at 1193.483 kb on + strand, within Xcc-8004.1259.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,189,719 - Xcc-8004.1257.1 0.45 -3.2
1,189,879 + Xcc-8004.1257.1 0.54 -2.0
1,190,066 - Xcc-8004.1257.1 0.64 -2.6
1,190,066 - Xcc-8004.1257.1 0.64 -2.3
1,190,068 + Xcc-8004.1257.1 0.64 -2.1
1,190,069 - Xcc-8004.1257.1 0.64 -3.3
1,190,069 - Xcc-8004.1257.1 0.64 -2.6
1,190,069 - Xcc-8004.1257.1 0.64 +0.2
1,190,119 + Xcc-8004.1257.1 0.67 -1.7
1,190,119 + Xcc-8004.1257.1 0.67 -2.8
1,190,119 + Xcc-8004.1257.1 0.67 -2.1
1,190,120 - Xcc-8004.1257.1 0.67 -3.0
1,190,311 + Xcc-8004.1257.1 0.78 -2.0
1,190,395 + Xcc-8004.1257.1 0.82 -0.6
1,190,395 + Xcc-8004.1257.1 0.82 -1.6
1,190,456 - Xcc-8004.1257.1 0.85 -2.8
1,190,467 + Xcc-8004.1257.1 0.86 -2.5
1,190,468 - Xcc-8004.1257.1 0.86 -2.8
1,190,468 - Xcc-8004.1257.1 0.86 -0.1
1,190,468 - Xcc-8004.1257.1 0.86 -2.5
1,190,705 + -3.3
1,190,705 + -0.1
1,190,706 - -0.3
1,190,706 - -1.8
1,190,706 - -1.1
1,190,706 - -0.3
1,190,708 + -2.3
1,190,708 + -1.6
1,190,708 + -2.1
1,190,709 - -2.5
1,190,709 - -3.6
1,190,709 - -0.1
1,190,724 - -1.8
1,190,753 + -3.3
1,190,852 + +1.3
1,190,852 + +0.2
1,190,852 + -2.3
1,190,852 + -3.4
1,190,852 + -3.3
1,190,852 + -3.6
1,190,852 + -2.8
1,190,853 - -1.1
1,190,853 - -2.9
1,190,853 - -1.9
1,190,853 - -1.3
1,190,853 - -2.4
1,190,853 - -4.3
1,190,853 - -1.5
1,190,853 - -2.3
1,190,853 - -1.7
1,190,853 - -1.8
1,190,882 + -1.7
1,190,882 + -2.7
1,190,882 + -3.3
1,190,882 + -2.9
1,190,882 + -1.6
1,190,882 + -2.6
1,190,882 + -1.4
1,190,882 + -2.4
1,190,883 - -1.8
1,190,883 - -1.8
1,190,883 - -1.6
1,190,922 - Xcc-8004.1258.1 0.12 -2.5
1,190,922 - Xcc-8004.1258.1 0.12 -1.6
1,190,922 - Xcc-8004.1258.1 0.12 -0.4
1,191,008 + Xcc-8004.1258.1 0.16 -1.8
1,191,008 + Xcc-8004.1258.1 0.16 -1.5
1,191,009 - Xcc-8004.1258.1 0.17 -0.5
1,191,009 - Xcc-8004.1258.1 0.17 -3.3
1,191,187 - Xcc-8004.1258.1 0.26 -1.8
1,191,188 + Xcc-8004.1258.1 0.26 +0.2
1,191,188 + Xcc-8004.1258.1 0.26 -2.3
1,191,188 + Xcc-8004.1258.1 0.26 -1.5
1,191,188 + Xcc-8004.1258.1 0.26 -2.1
1,191,188 + Xcc-8004.1258.1 0.26 -1.9
1,191,189 - Xcc-8004.1258.1 0.26 -0.8
1,191,189 - Xcc-8004.1258.1 0.26 -0.3
1,191,189 - Xcc-8004.1258.1 0.26 -2.2
1,191,189 - Xcc-8004.1258.1 0.26 -1.1
1,191,189 - Xcc-8004.1258.1 0.26 -3.6
1,191,269 + Xcc-8004.1258.1 0.31 -3.2
1,191,270 - Xcc-8004.1258.1 0.31 -0.3
1,191,295 + Xcc-8004.1258.1 0.32 -2.0
1,191,295 + Xcc-8004.1258.1 0.32 -3.3
1,191,296 - Xcc-8004.1258.1 0.32 -2.0
1,191,296 - Xcc-8004.1258.1 0.32 -2.6
1,191,296 - Xcc-8004.1258.1 0.32 -2.6
1,191,296 - Xcc-8004.1258.1 0.32 -3.6
1,191,335 + Xcc-8004.1258.1 0.34 -0.7
1,191,335 + Xcc-8004.1258.1 0.34 -0.7
1,191,336 - Xcc-8004.1258.1 0.34 -2.6
1,191,336 - Xcc-8004.1258.1 0.34 -1.0
1,191,336 - Xcc-8004.1258.1 0.34 -2.4
1,191,695 + Xcc-8004.1258.1 0.54 -1.3
1,191,758 + Xcc-8004.1258.1 0.57 -0.7
1,191,758 + Xcc-8004.1258.1 0.57 -2.7
1,191,759 - Xcc-8004.1258.1 0.57 -2.2
1,191,759 - Xcc-8004.1258.1 0.57 -3.0
1,191,759 - Xcc-8004.1258.1 0.57 -2.6
1,192,061 + Xcc-8004.1258.1 0.73 -2.4
1,192,062 - Xcc-8004.1258.1 0.73 -3.3
1,192,062 - Xcc-8004.1258.1 0.73 -2.9
1,192,062 - Xcc-8004.1258.1 0.73 -2.7
1,192,091 + Xcc-8004.1258.1 0.75 -2.0
1,192,091 + Xcc-8004.1258.1 0.75 -0.5
1,192,092 - Xcc-8004.1258.1 0.75 -0.3
1,192,196 + Xcc-8004.1258.1 0.81 -2.9
1,192,196 + Xcc-8004.1258.1 0.81 -1.5
1,192,196 + Xcc-8004.1258.1 0.81 -2.4
1,192,196 + Xcc-8004.1258.1 0.81 -0.4
1,192,196 + Xcc-8004.1258.1 0.81 -3.0
1,192,196 + Xcc-8004.1258.1 0.81 -1.5
1,192,196 + Xcc-8004.1258.1 0.81 -3.4
1,192,196 + Xcc-8004.1258.1 0.81 -2.0
1,192,196 + Xcc-8004.1258.1 0.81 -0.7
1,192,197 - Xcc-8004.1258.1 0.81 -1.1
1,192,197 - Xcc-8004.1258.1 0.81 -4.0
1,192,197 - Xcc-8004.1258.1 0.81 -2.8
1,192,197 - Xcc-8004.1258.1 0.81 -2.8
1,192,197 - Xcc-8004.1258.1 0.81 -3.9
1,192,197 - Xcc-8004.1258.1 0.81 -3.0
1,192,197 - Xcc-8004.1258.1 0.81 -2.5
1,192,197 - Xcc-8004.1258.1 0.81 -2.6
1,192,197 - Xcc-8004.1258.1 0.81 -0.6
1,192,197 - Xcc-8004.1258.1 0.81 -2.3
1,192,331 + Xcc-8004.1258.1 0.88 -2.3
1,192,331 + Xcc-8004.1258.1 0.88 -1.8
1,192,332 - Xcc-8004.1258.1 0.88 -0.5
1,192,434 + -1.0
1,192,434 + -2.1
1,192,435 - -2.7
1,192,631 - -1.4
1,192,643 + -3.2
1,192,643 + -1.4
1,192,643 + -1.4
1,192,643 + -2.3
1,192,644 - -2.4
1,192,830 - Xcc-8004.1259.1 0.24 -3.8
1,192,922 - Xcc-8004.1259.1 0.33 -1.7
1,193,241 - Xcc-8004.1259.1 0.63 -2.1
1,193,241 - Xcc-8004.1259.1 0.63 -0.9
1,193,241 - Xcc-8004.1259.1 0.63 -3.2
1,193,241 - Xcc-8004.1259.1 0.63 -0.3
1,193,318 + Xcc-8004.1259.1 0.70 -2.5
1,193,318 + Xcc-8004.1259.1 0.70 -2.0
1,193,318 + Xcc-8004.1259.1 0.70 -3.2
1,193,318 + Xcc-8004.1259.1 0.70 -1.1
1,193,319 - Xcc-8004.1259.1 0.70 -4.1
1,193,319 - Xcc-8004.1259.1 0.70 -1.0
1,193,319 - Xcc-8004.1259.1 0.70 -1.4
1,193,319 - Xcc-8004.1259.1 0.70 -2.0
1,193,319 - Xcc-8004.1259.1 0.70 -0.7
1,193,319 - Xcc-8004.1259.1 0.70 -3.8
1,193,324 + Xcc-8004.1259.1 0.70 -0.8
1,193,325 - Xcc-8004.1259.1 0.71 -1.1
1,193,354 + Xcc-8004.1259.1 0.73 -3.4
1,193,355 - Xcc-8004.1259.1 0.73 -2.3
1,193,355 - Xcc-8004.1259.1 0.73 -1.7
1,193,355 - Xcc-8004.1259.1 0.73 -1.8
1,193,483 + Xcc-8004.1259.1 0.85 -1.3

Or see this region's nucleotide sequence