Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1257.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1255.1 and Xcc-8004.1256.1 are separated by 30 nucleotidesXcc-8004.1256.1 and Xcc-8004.1257.1 overlap by 4 nucleotidesXcc-8004.1257.1 and Xcc-8004.1258.1 overlap by 20 nucleotides Xcc-8004.1255.1: Xcc-8004.1255.1 - Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB, at 1,186,558 to 1,188,129 Xcc-8004.1255.1 Xcc-8004.1256.1: Xcc-8004.1256.1 - Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8), at 1,188,160 to 1,188,885 Xcc-8004.1256.1 Xcc-8004.1257.1: Xcc-8004.1257.1 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 1,188,882 to 1,190,723 Xcc-8004.1257.1 Xcc-8004.1258.1: Xcc-8004.1258.1 - Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2), at 1,190,704 to 1,192,551 Xcc-8004.1258.1 Position (kb) 1188 1189 1190 1191Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1188.074 kb on + strandat 1188.100 kb on + strandat 1188.100 kb on + strandat 1188.101 kb on - strandat 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.273 kb on - strand, within Xcc-8004.1256.1at 1188.273 kb on - strand, within Xcc-8004.1256.1at 1188.273 kb on - strand, within Xcc-8004.1256.1at 1188.273 kb on - strand, within Xcc-8004.1256.1at 1188.273 kb on - strand, within Xcc-8004.1256.1at 1188.320 kb on + strand, within Xcc-8004.1256.1at 1188.320 kb on + strand, within Xcc-8004.1256.1at 1188.320 kb on + strand, within Xcc-8004.1256.1at 1188.368 kb on + strand, within Xcc-8004.1256.1at 1188.368 kb on + strand, within Xcc-8004.1256.1at 1188.368 kb on + strand, within Xcc-8004.1256.1at 1188.368 kb on + strand, within Xcc-8004.1256.1at 1188.369 kb on - strand, within Xcc-8004.1256.1at 1188.506 kb on + strand, within Xcc-8004.1256.1at 1188.506 kb on + strand, within Xcc-8004.1256.1at 1188.506 kb on + strand, within Xcc-8004.1256.1at 1188.506 kb on + strand, within Xcc-8004.1256.1at 1188.507 kb on - strand, within Xcc-8004.1256.1at 1188.507 kb on - strand, within Xcc-8004.1256.1at 1188.507 kb on - strand, within Xcc-8004.1256.1at 1188.638 kb on + strand, within Xcc-8004.1256.1at 1188.638 kb on + strand, within Xcc-8004.1256.1at 1188.638 kb on + strand, within Xcc-8004.1256.1at 1188.639 kb on - strand, within Xcc-8004.1256.1at 1188.639 kb on - strand, within Xcc-8004.1256.1at 1188.656 kb on + strand, within Xcc-8004.1256.1at 1188.657 kb on - strand, within Xcc-8004.1256.1at 1189.063 kb on + strandat 1189.114 kb on + strand, within Xcc-8004.1257.1at 1189.115 kb on - strand, within Xcc-8004.1257.1at 1189.699 kb on + strand, within Xcc-8004.1257.1at 1189.699 kb on + strand, within Xcc-8004.1257.1at 1189.699 kb on + strand, within Xcc-8004.1257.1at 1189.700 kb on - strand, within Xcc-8004.1257.1at 1189.700 kb on - strand, within Xcc-8004.1257.1at 1189.700 kb on - strand, within Xcc-8004.1257.1at 1189.700 kb on - strand, within Xcc-8004.1257.1at 1189.719 kb on - strand, within Xcc-8004.1257.1at 1189.879 kb on + strand, within Xcc-8004.1257.1at 1190.066 kb on - strand, within Xcc-8004.1257.1at 1190.066 kb on - strand, within Xcc-8004.1257.1at 1190.068 kb on + strand, within Xcc-8004.1257.1at 1190.069 kb on - strand, within Xcc-8004.1257.1at 1190.069 kb on - strand, within Xcc-8004.1257.1at 1190.069 kb on - strand, within Xcc-8004.1257.1at 1190.119 kb on + strand, within Xcc-8004.1257.1at 1190.119 kb on + strand, within Xcc-8004.1257.1at 1190.119 kb on + strand, within Xcc-8004.1257.1at 1190.120 kb on - strand, within Xcc-8004.1257.1at 1190.311 kb on + strand, within Xcc-8004.1257.1at 1190.395 kb on + strand, within Xcc-8004.1257.1at 1190.395 kb on + strand, within Xcc-8004.1257.1at 1190.456 kb on - strand, within Xcc-8004.1257.1at 1190.467 kb on + strand, within Xcc-8004.1257.1at 1190.468 kb on - strand, within Xcc-8004.1257.1at 1190.468 kb on - strand, within Xcc-8004.1257.1at 1190.468 kb on - strand, within Xcc-8004.1257.1at 1190.705 kb on + strandat 1190.705 kb on + strandat 1190.706 kb on - strandat 1190.706 kb on - strandat 1190.706 kb on - strandat 1190.706 kb on - strandat 1190.708 kb on + strandat 1190.708 kb on + strandat 1190.708 kb on + strandat 1190.709 kb on - strandat 1190.709 kb on - strandat 1190.709 kb on - strandat 1190.724 kb on - strandat 1190.753 kb on + strandat 1190.852 kb on + strandat 1190.852 kb on + strandat 1190.852 kb on + strandat 1190.852 kb on + strandat 1190.852 kb on + strandat 1190.852 kb on + strandat 1190.852 kb on + strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.853 kb on - strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.882 kb on + strandat 1190.883 kb on - strandat 1190.883 kb on - strandat 1190.883 kb on - strandat 1190.922 kb on - strand, within Xcc-8004.1258.1at 1190.922 kb on - strand, within Xcc-8004.1258.1at 1190.922 kb on - strand, within Xcc-8004.1258.1at 1191.008 kb on + strand, within Xcc-8004.1258.1at 1191.008 kb on + strand, within Xcc-8004.1258.1at 1191.009 kb on - strand, within Xcc-8004.1258.1at 1191.009 kb on - strand, within Xcc-8004.1258.1at 1191.187 kb on - strand, within Xcc-8004.1258.1at 1191.188 kb on + strand, within Xcc-8004.1258.1at 1191.188 kb on + strand, within Xcc-8004.1258.1at 1191.188 kb on + strand, within Xcc-8004.1258.1at 1191.188 kb on + strand, within Xcc-8004.1258.1at 1191.188 kb on + strand, within Xcc-8004.1258.1at 1191.189 kb on - strand, within Xcc-8004.1258.1at 1191.189 kb on - strand, within Xcc-8004.1258.1at 1191.189 kb on - strand, within Xcc-8004.1258.1at 1191.189 kb on - strand, within Xcc-8004.1258.1at 1191.189 kb on - strand, within Xcc-8004.1258.1at 1191.269 kb on + strand, within Xcc-8004.1258.1at 1191.270 kb on - strand, within Xcc-8004.1258.1at 1191.295 kb on + strand, within Xcc-8004.1258.1at 1191.295 kb on + strand, within Xcc-8004.1258.1at 1191.296 kb on - strand, within Xcc-8004.1258.1at 1191.296 kb on - strand, within Xcc-8004.1258.1at 1191.296 kb on - strand, within Xcc-8004.1258.1at 1191.296 kb on - strand, within Xcc-8004.1258.1at 1191.335 kb on + strand, within Xcc-8004.1258.1at 1191.335 kb on + strand, within Xcc-8004.1258.1at 1191.336 kb on - strand, within Xcc-8004.1258.1at 1191.336 kb on - strand, within Xcc-8004.1258.1at 1191.336 kb on - strand, within Xcc-8004.1258.1at 1191.695 kb on + strand, within Xcc-8004.1258.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,188,074 + +0.4
1,188,100 + -0.3
1,188,100 + -0.1
1,188,101 - -0.6
1,188,272 + Xcc-8004.1256.1 0.15 -3.4
1,188,272 + Xcc-8004.1256.1 0.15 -1.7
1,188,272 + Xcc-8004.1256.1 0.15 -2.2
1,188,272 + Xcc-8004.1256.1 0.15 -3.8
1,188,272 + Xcc-8004.1256.1 0.15 -2.4
1,188,272 + Xcc-8004.1256.1 0.15 -3.9
1,188,272 + Xcc-8004.1256.1 0.15 -3.1
1,188,272 + Xcc-8004.1256.1 0.15 -2.8
1,188,273 - Xcc-8004.1256.1 0.16 -2.7
1,188,273 - Xcc-8004.1256.1 0.16 -3.7
1,188,273 - Xcc-8004.1256.1 0.16 -4.2
1,188,273 - Xcc-8004.1256.1 0.16 -2.8
1,188,273 - Xcc-8004.1256.1 0.16 -0.5
1,188,320 + Xcc-8004.1256.1 0.22 -1.9
1,188,320 + Xcc-8004.1256.1 0.22 -2.3
1,188,320 + Xcc-8004.1256.1 0.22 -2.4
1,188,368 + Xcc-8004.1256.1 0.29 -3.4
1,188,368 + Xcc-8004.1256.1 0.29 -0.4
1,188,368 + Xcc-8004.1256.1 0.29 -3.4
1,188,368 + Xcc-8004.1256.1 0.29 -2.1
1,188,369 - Xcc-8004.1256.1 0.29 -3.7
1,188,506 + Xcc-8004.1256.1 0.48 -2.4
1,188,506 + Xcc-8004.1256.1 0.48 -2.2
1,188,506 + Xcc-8004.1256.1 0.48 -3.3
1,188,506 + Xcc-8004.1256.1 0.48 -1.6
1,188,507 - Xcc-8004.1256.1 0.48 -1.3
1,188,507 - Xcc-8004.1256.1 0.48 -2.7
1,188,507 - Xcc-8004.1256.1 0.48 -3.3
1,188,638 + Xcc-8004.1256.1 0.66 -1.3
1,188,638 + Xcc-8004.1256.1 0.66 -2.3
1,188,638 + Xcc-8004.1256.1 0.66 -4.5
1,188,639 - Xcc-8004.1256.1 0.66 -3.0
1,188,639 - Xcc-8004.1256.1 0.66 -1.2
1,188,656 + Xcc-8004.1256.1 0.68 -0.8
1,188,657 - Xcc-8004.1256.1 0.68 -1.4
1,189,063 + -2.3
1,189,114 + Xcc-8004.1257.1 0.13 -4.3
1,189,115 - Xcc-8004.1257.1 0.13 -2.4
1,189,699 + Xcc-8004.1257.1 0.44 -1.7
1,189,699 + Xcc-8004.1257.1 0.44 -3.1
1,189,699 + Xcc-8004.1257.1 0.44 -2.6
1,189,700 - Xcc-8004.1257.1 0.44 -2.8
1,189,700 - Xcc-8004.1257.1 0.44 -1.3
1,189,700 - Xcc-8004.1257.1 0.44 -2.7
1,189,700 - Xcc-8004.1257.1 0.44 -1.5
1,189,719 - Xcc-8004.1257.1 0.45 -3.2
1,189,879 + Xcc-8004.1257.1 0.54 -2.0
1,190,066 - Xcc-8004.1257.1 0.64 -2.6
1,190,066 - Xcc-8004.1257.1 0.64 -2.3
1,190,068 + Xcc-8004.1257.1 0.64 -2.1
1,190,069 - Xcc-8004.1257.1 0.64 -3.3
1,190,069 - Xcc-8004.1257.1 0.64 -2.6
1,190,069 - Xcc-8004.1257.1 0.64 +0.2
1,190,119 + Xcc-8004.1257.1 0.67 -1.7
1,190,119 + Xcc-8004.1257.1 0.67 -2.8
1,190,119 + Xcc-8004.1257.1 0.67 -2.1
1,190,120 - Xcc-8004.1257.1 0.67 -3.0
1,190,311 + Xcc-8004.1257.1 0.78 -2.0
1,190,395 + Xcc-8004.1257.1 0.82 -0.6
1,190,395 + Xcc-8004.1257.1 0.82 -1.6
1,190,456 - Xcc-8004.1257.1 0.85 -2.8
1,190,467 + Xcc-8004.1257.1 0.86 -2.5
1,190,468 - Xcc-8004.1257.1 0.86 -2.8
1,190,468 - Xcc-8004.1257.1 0.86 -0.1
1,190,468 - Xcc-8004.1257.1 0.86 -2.5
1,190,705 + -3.3
1,190,705 + -0.1
1,190,706 - -0.3
1,190,706 - -1.8
1,190,706 - -1.1
1,190,706 - -0.3
1,190,708 + -2.3
1,190,708 + -1.6
1,190,708 + -2.1
1,190,709 - -2.5
1,190,709 - -3.6
1,190,709 - -0.1
1,190,724 - -1.8
1,190,753 + -3.3
1,190,852 + +1.3
1,190,852 + +0.2
1,190,852 + -2.3
1,190,852 + -3.4
1,190,852 + -3.3
1,190,852 + -3.6
1,190,852 + -2.8
1,190,853 - -1.1
1,190,853 - -2.9
1,190,853 - -1.9
1,190,853 - -1.3
1,190,853 - -2.4
1,190,853 - -4.3
1,190,853 - -1.5
1,190,853 - -2.3
1,190,853 - -1.7
1,190,853 - -1.8
1,190,882 + -1.7
1,190,882 + -2.7
1,190,882 + -3.3
1,190,882 + -2.9
1,190,882 + -1.6
1,190,882 + -2.6
1,190,882 + -1.4
1,190,882 + -2.4
1,190,883 - -1.8
1,190,883 - -1.8
1,190,883 - -1.6
1,190,922 - Xcc-8004.1258.1 0.12 -2.5
1,190,922 - Xcc-8004.1258.1 0.12 -1.6
1,190,922 - Xcc-8004.1258.1 0.12 -0.4
1,191,008 + Xcc-8004.1258.1 0.16 -1.8
1,191,008 + Xcc-8004.1258.1 0.16 -1.5
1,191,009 - Xcc-8004.1258.1 0.17 -0.5
1,191,009 - Xcc-8004.1258.1 0.17 -3.3
1,191,187 - Xcc-8004.1258.1 0.26 -1.8
1,191,188 + Xcc-8004.1258.1 0.26 +0.2
1,191,188 + Xcc-8004.1258.1 0.26 -2.3
1,191,188 + Xcc-8004.1258.1 0.26 -1.5
1,191,188 + Xcc-8004.1258.1 0.26 -2.1
1,191,188 + Xcc-8004.1258.1 0.26 -1.9
1,191,189 - Xcc-8004.1258.1 0.26 -0.8
1,191,189 - Xcc-8004.1258.1 0.26 -0.3
1,191,189 - Xcc-8004.1258.1 0.26 -2.2
1,191,189 - Xcc-8004.1258.1 0.26 -1.1
1,191,189 - Xcc-8004.1258.1 0.26 -3.6
1,191,269 + Xcc-8004.1258.1 0.31 -3.2
1,191,270 - Xcc-8004.1258.1 0.31 -0.3
1,191,295 + Xcc-8004.1258.1 0.32 -2.0
1,191,295 + Xcc-8004.1258.1 0.32 -3.3
1,191,296 - Xcc-8004.1258.1 0.32 -2.0
1,191,296 - Xcc-8004.1258.1 0.32 -2.6
1,191,296 - Xcc-8004.1258.1 0.32 -2.6
1,191,296 - Xcc-8004.1258.1 0.32 -3.6
1,191,335 + Xcc-8004.1258.1 0.34 -0.7
1,191,335 + Xcc-8004.1258.1 0.34 -0.7
1,191,336 - Xcc-8004.1258.1 0.34 -2.6
1,191,336 - Xcc-8004.1258.1 0.34 -1.0
1,191,336 - Xcc-8004.1258.1 0.34 -2.4
1,191,695 + Xcc-8004.1258.1 0.54 -1.3

Or see this region's nucleotide sequence