Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1256.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1255.1 and Xcc-8004.1256.1 are separated by 30 nucleotidesXcc-8004.1256.1 and Xcc-8004.1257.1 overlap by 4 nucleotides Xcc-8004.1255.1: Xcc-8004.1255.1 - Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB, at 1,186,558 to 1,188,129 Xcc-8004.1255.1 Xcc-8004.1256.1: Xcc-8004.1256.1 - Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8), at 1,188,160 to 1,188,885 Xcc-8004.1256.1 Xcc-8004.1257.1: Xcc-8004.1257.1 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 1,188,882 to 1,190,723 Xcc-8004.1257.1 Position (kb) 1188 1189Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1187.679 kb on + strand, within Xcc-8004.1255.1at 1187.679 kb on + strand, within Xcc-8004.1255.1at 1187.679 kb on + strand, within Xcc-8004.1255.1at 1187.680 kb on - strand, within Xcc-8004.1255.1at 1187.713 kb on + strand, within Xcc-8004.1255.1at 1187.713 kb on + strand, within Xcc-8004.1255.1at 1187.713 kb on + strand, within Xcc-8004.1255.1at 1187.714 kb on - strand, within Xcc-8004.1255.1at 1187.715 kb on + strand, within Xcc-8004.1255.1at 1187.715 kb on + strand, within Xcc-8004.1255.1at 1187.716 kb on - strand, within Xcc-8004.1255.1at 1187.728 kb on + strand, within Xcc-8004.1255.1at 1187.773 kb on + strand, within Xcc-8004.1255.1at 1187.774 kb on - strand, within Xcc-8004.1255.1at 1187.774 kb on - strand, within Xcc-8004.1255.1at 1187.774 kb on - strand, within Xcc-8004.1255.1at 1187.813 kb on - strand, within Xcc-8004.1255.1at 1187.870 kb on - strand, within Xcc-8004.1255.1at 1188.074 kb on + strandat 1188.100 kb on + strandat 1188.100 kb on + strandat 1188.101 kb on - strandat 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.272 kb on + strand, within Xcc-8004.1256.1at 1188.273 kb on - strand, within Xcc-8004.1256.1at 1188.273 kb on - strand, within Xcc-8004.1256.1at 1188.273 kb on - strand, within Xcc-8004.1256.1at 1188.273 kb on - strand, within Xcc-8004.1256.1at 1188.273 kb on - strand, within Xcc-8004.1256.1at 1188.320 kb on + strand, within Xcc-8004.1256.1at 1188.320 kb on + strand, within Xcc-8004.1256.1at 1188.320 kb on + strand, within Xcc-8004.1256.1at 1188.368 kb on + strand, within Xcc-8004.1256.1at 1188.368 kb on + strand, within Xcc-8004.1256.1at 1188.368 kb on + strand, within Xcc-8004.1256.1at 1188.368 kb on + strand, within Xcc-8004.1256.1at 1188.369 kb on - strand, within Xcc-8004.1256.1at 1188.506 kb on + strand, within Xcc-8004.1256.1at 1188.506 kb on + strand, within Xcc-8004.1256.1at 1188.506 kb on + strand, within Xcc-8004.1256.1at 1188.506 kb on + strand, within Xcc-8004.1256.1at 1188.507 kb on - strand, within Xcc-8004.1256.1at 1188.507 kb on - strand, within Xcc-8004.1256.1at 1188.507 kb on - strand, within Xcc-8004.1256.1at 1188.638 kb on + strand, within Xcc-8004.1256.1at 1188.638 kb on + strand, within Xcc-8004.1256.1at 1188.638 kb on + strand, within Xcc-8004.1256.1at 1188.639 kb on - strand, within Xcc-8004.1256.1at 1188.639 kb on - strand, within Xcc-8004.1256.1at 1188.656 kb on + strand, within Xcc-8004.1256.1at 1188.657 kb on - strand, within Xcc-8004.1256.1at 1189.063 kb on + strandat 1189.114 kb on + strand, within Xcc-8004.1257.1at 1189.115 kb on - strand, within Xcc-8004.1257.1at 1189.699 kb on + strand, within Xcc-8004.1257.1at 1189.699 kb on + strand, within Xcc-8004.1257.1at 1189.699 kb on + strand, within Xcc-8004.1257.1at 1189.700 kb on - strand, within Xcc-8004.1257.1at 1189.700 kb on - strand, within Xcc-8004.1257.1at 1189.700 kb on - strand, within Xcc-8004.1257.1at 1189.700 kb on - strand, within Xcc-8004.1257.1at 1189.719 kb on - strand, within Xcc-8004.1257.1at 1189.879 kb on + strand, within Xcc-8004.1257.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,187,679 + Xcc-8004.1255.1 0.71 +0.2
1,187,679 + Xcc-8004.1255.1 0.71 -0.1
1,187,679 + Xcc-8004.1255.1 0.71 +0.3
1,187,680 - Xcc-8004.1255.1 0.71 +0.7
1,187,713 + Xcc-8004.1255.1 0.73 -0.9
1,187,713 + Xcc-8004.1255.1 0.73 -0.7
1,187,713 + Xcc-8004.1255.1 0.73 +0.5
1,187,714 - Xcc-8004.1255.1 0.74 +0.0
1,187,715 + Xcc-8004.1255.1 0.74 -0.7
1,187,715 + Xcc-8004.1255.1 0.74 -1.2
1,187,716 - Xcc-8004.1255.1 0.74 +1.2
1,187,728 + Xcc-8004.1255.1 0.74 -2.3
1,187,773 + Xcc-8004.1255.1 0.77 -0.7
1,187,774 - Xcc-8004.1255.1 0.77 -0.4
1,187,774 - Xcc-8004.1255.1 0.77 +0.9
1,187,774 - Xcc-8004.1255.1 0.77 -0.6
1,187,813 - Xcc-8004.1255.1 0.80 -0.3
1,187,870 - Xcc-8004.1255.1 0.83 +0.0
1,188,074 + +0.4
1,188,100 + -0.3
1,188,100 + -0.1
1,188,101 - -0.6
1,188,272 + Xcc-8004.1256.1 0.15 -3.4
1,188,272 + Xcc-8004.1256.1 0.15 -1.7
1,188,272 + Xcc-8004.1256.1 0.15 -2.2
1,188,272 + Xcc-8004.1256.1 0.15 -3.8
1,188,272 + Xcc-8004.1256.1 0.15 -2.4
1,188,272 + Xcc-8004.1256.1 0.15 -3.9
1,188,272 + Xcc-8004.1256.1 0.15 -3.1
1,188,272 + Xcc-8004.1256.1 0.15 -2.8
1,188,273 - Xcc-8004.1256.1 0.16 -2.7
1,188,273 - Xcc-8004.1256.1 0.16 -3.7
1,188,273 - Xcc-8004.1256.1 0.16 -4.2
1,188,273 - Xcc-8004.1256.1 0.16 -2.8
1,188,273 - Xcc-8004.1256.1 0.16 -0.5
1,188,320 + Xcc-8004.1256.1 0.22 -1.9
1,188,320 + Xcc-8004.1256.1 0.22 -2.3
1,188,320 + Xcc-8004.1256.1 0.22 -2.4
1,188,368 + Xcc-8004.1256.1 0.29 -3.4
1,188,368 + Xcc-8004.1256.1 0.29 -0.4
1,188,368 + Xcc-8004.1256.1 0.29 -3.4
1,188,368 + Xcc-8004.1256.1 0.29 -2.1
1,188,369 - Xcc-8004.1256.1 0.29 -3.7
1,188,506 + Xcc-8004.1256.1 0.48 -2.4
1,188,506 + Xcc-8004.1256.1 0.48 -2.2
1,188,506 + Xcc-8004.1256.1 0.48 -3.3
1,188,506 + Xcc-8004.1256.1 0.48 -1.6
1,188,507 - Xcc-8004.1256.1 0.48 -1.3
1,188,507 - Xcc-8004.1256.1 0.48 -2.7
1,188,507 - Xcc-8004.1256.1 0.48 -3.3
1,188,638 + Xcc-8004.1256.1 0.66 -1.3
1,188,638 + Xcc-8004.1256.1 0.66 -2.3
1,188,638 + Xcc-8004.1256.1 0.66 -4.5
1,188,639 - Xcc-8004.1256.1 0.66 -3.0
1,188,639 - Xcc-8004.1256.1 0.66 -1.2
1,188,656 + Xcc-8004.1256.1 0.68 -0.8
1,188,657 - Xcc-8004.1256.1 0.68 -1.4
1,189,063 + -2.3
1,189,114 + Xcc-8004.1257.1 0.13 -4.3
1,189,115 - Xcc-8004.1257.1 0.13 -2.4
1,189,699 + Xcc-8004.1257.1 0.44 -1.7
1,189,699 + Xcc-8004.1257.1 0.44 -3.1
1,189,699 + Xcc-8004.1257.1 0.44 -2.6
1,189,700 - Xcc-8004.1257.1 0.44 -2.8
1,189,700 - Xcc-8004.1257.1 0.44 -1.3
1,189,700 - Xcc-8004.1257.1 0.44 -2.7
1,189,700 - Xcc-8004.1257.1 0.44 -1.5
1,189,719 - Xcc-8004.1257.1 0.45 -3.2
1,189,879 + Xcc-8004.1257.1 0.54 -2.0

Or see this region's nucleotide sequence