Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1249.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,179,740	+		Xcc-8004.1248.1	0.36	-3.9
1,179,741	-		Xcc-8004.1248.1	0.36	-2.6
1,180,016	+		Xcc-8004.1248.1	0.59	-1.3
1,180,553	+				+0.9
1,180,553	+				-2.0
1,180,553	+				+0.2
1,180,554	-				-2.1
1,180,554	-				-1.6
1,180,554	-				-1.7
1,180,554	-				-3.4
1,180,554	-				-1.5
1,180,556	-				-3.6
1,180,556	-				-1.3
1,180,556	-				-3.3
1,180,584	-				-1.6
1,180,600	+				-0.6
1,180,602	+				-1.9
1,180,603	-				-0.5
1,180,603	-				-0.8
1,180,625	+				+0.2
1,180,625	+				+0.9
1,180,625	+				-0.6
1,180,625	+				-1.2
1,180,626	-				+1.1
1,180,626	-				+0.9
1,180,626	-				-0.5
1,180,626	-				+0.0
1,180,642	+				+0.4
1,180,642	+				-0.8
1,180,642	+				+2.2
1,180,643	-				+0.2
1,180,643	-				-2.3
1,180,643	-				-1.6
1,180,666	+				-0.7
1,180,666	+				-0.4
1,180,666	+				-1.7
1,180,666	+				-0.5
1,180,666	+				+0.3
1,180,666	+				+1.0
1,180,666	+				-0.3
1,180,666	+				-0.8
1,180,666	+				-0.1
1,180,666	+				+0.8
1,180,666	+				+1.7
1,180,666	+				+1.5
1,180,666	+				+0.1
1,180,666	+				-1.5
1,180,666	+				+0.5
1,180,666	+				-1.6
1,180,666	+				-0.5
1,180,666	+				-0.6
1,180,666	+				-1.0
1,180,666	+				-1.1
1,180,667	-				-2.5
1,180,667	-				-3.8
1,180,667	-				-1.6
1,180,667	-				-1.3
1,180,667	-				-1.4
1,180,667	-				-0.1
1,180,667	-				-2.3
1,180,667	-				-2.2
1,180,667	-				-2.3
1,180,667	-				-2.1
1,180,667	-				-2.1
1,180,667	-				-1.6
1,180,667	-				-0.4
1,180,667	-				-3.3
1,180,667	-				-2.6
1,180,667	-				-3.7
1,180,667	-				-2.2
1,180,919	+		Xcc-8004.1249.1	0.25	-1.8
1,180,919	+		Xcc-8004.1249.1	0.25	-2.4
1,180,919	+		Xcc-8004.1249.1	0.25	-2.2
1,180,919	+		Xcc-8004.1249.1	0.25	-2.2
1,180,919	+		Xcc-8004.1249.1	0.25	-1.6
1,180,920	-		Xcc-8004.1249.1	0.25	-3.2
1,180,920	-		Xcc-8004.1249.1	0.25	-2.3
1,180,976	-		Xcc-8004.1249.1	0.31	-0.8
1,181,028	-		Xcc-8004.1249.1	0.36	-2.3
1,181,028	-		Xcc-8004.1249.1	0.36	-1.3
1,181,182	-		Xcc-8004.1249.1	0.52	-2.9
1,181,261	+		Xcc-8004.1249.1	0.60	-2.3
1,181,261	+		Xcc-8004.1249.1	0.60	-2.1
1,181,262	-		Xcc-8004.1249.1	0.60	-0.5
1,181,369	+		Xcc-8004.1249.1	0.71	-1.8
1,181,369	+		Xcc-8004.1249.1	0.71	-1.0
1,181,369	+		Xcc-8004.1249.1	0.71	-0.6
1,181,369	+		Xcc-8004.1249.1	0.71	-0.6
1,181,370	-		Xcc-8004.1249.1	0.71	-3.1
1,181,370	-		Xcc-8004.1249.1	0.71	+0.7
1,181,516	+		Xcc-8004.1249.1	0.86	-1.8
1,182,027	+				-0.1
1,182,028	-				+0.3
1,182,028	-				-1.3
1,182,126	+				+0.2
1,182,161	-				+0.2
1,182,171	+				-1.5
1,182,172	-				-0.7
1,182,214	+		Xcc-8004.1251.1	0.30	+0.7
1,182,214	+		Xcc-8004.1251.1	0.30	+0.0
1,182,215	-		Xcc-8004.1251.1	0.31	-0.6
1,182,215	-		Xcc-8004.1251.1	0.31	-0.3
1,182,215	-		Xcc-8004.1251.1	0.31	+1.3
1,182,297	+		Xcc-8004.1251.1	0.86	+2.2
1,182,297	+		Xcc-8004.1251.1	0.86	+0.7
1,182,297	+		Xcc-8004.1251.1	0.86	-1.2
1,182,298	-		Xcc-8004.1251.1	0.87	+0.8
1,182,298	-		Xcc-8004.1251.1	0.87	-0.2
1,182,298	-		Xcc-8004.1251.1	0.87	-0.6
1,182,305	+				-1.1
1,182,305	+				-1.3
1,182,305	+				-0.6
1,182,306	-				+0.7
1,182,306	-				-0.0
1,182,306	-				+0.4
1,182,306	-				+0.5
1,182,307	+				-1.4
1,182,307	+				-0.3
1,182,307	+				-0.7
1,182,307	+				+0.1
1,182,307	+				-1.2
1,182,307	+				-0.6
1,182,307	+				+0.4
1,182,307	+				+0.4
1,182,307	+				-0.3
1,182,307	+				-1.1
1,182,307	+				+0.4
1,182,307	+				-0.5
1,182,307	+				-1.5
1,182,307	+				-0.2
1,182,307	+				+0.7
1,182,307	+				-1.2
1,182,307	+				+0.0
1,182,307	+				-0.8
1,182,307	+				+1.3
1,182,307	+				-0.7
1,182,308	-				+0.2
1,182,308	-				-0.8
1,182,308	-				+0.2
1,182,308	-				-1.1
1,182,308	-				-0.1
1,182,308	-				-0.8
1,182,308	-				+0.7
1,182,308	-				+0.4
1,182,308	-				-2.6
1,182,308	-				+1.0
1,182,308	-				-0.9
1,182,308	-				+0.9
1,182,308	-				-0.0
1,182,308	-				+0.1
1,182,308	-				+0.5
1,182,308	-				-2.1
1,182,308	-				+0.5
1,182,308	-				-1.4
1,182,308	-				+0.5
1,182,308	-				+0.6
1,182,308	-				-0.2
1,182,308	-				-2.0
1,182,308	-				-0.2
1,182,338	-				+1.2
1,182,338	-				+0.3
1,182,400	+				-1.4
1,182,400	+				-0.6
1,182,400	+				+0.7
1,182,401	-				-0.2
1,182,401	-				-0.8
1,182,401	-				+1.2
1,182,401	-				-1.0
1,182,401	-				+0.1