Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1248.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,178,398	+				-1.7
1,178,398	+				-2.6
1,178,398	+				-3.7
1,178,399	-				+0.0
1,178,399	-				+0.2
1,178,724	+		Xcc-8004.1247.1	0.41	-0.7
1,178,725	-		Xcc-8004.1247.1	0.41	-0.8
1,178,725	-		Xcc-8004.1247.1	0.41	-0.3
1,178,725	-		Xcc-8004.1247.1	0.41	-1.2
1,178,725	-		Xcc-8004.1247.1	0.41	-0.6
1,178,836	+		Xcc-8004.1247.1	0.53	-0.8
1,179,028	+		Xcc-8004.1247.1	0.73	-2.1
1,179,028	+		Xcc-8004.1247.1	0.73	-1.1
1,179,028	+		Xcc-8004.1247.1	0.73	-1.6
1,179,029	-		Xcc-8004.1247.1	0.73	-3.0
1,179,029	-		Xcc-8004.1247.1	0.73	-0.8
1,179,199	+				-2.7
1,179,199	+				-3.8
1,179,200	-				-3.1
1,179,200	-				-0.1
1,179,277	+				-1.4
1,179,588	+		Xcc-8004.1248.1	0.24	-2.3
1,179,611	+		Xcc-8004.1248.1	0.25	-1.2
1,179,611	+		Xcc-8004.1248.1	0.25	-2.4
1,179,611	+		Xcc-8004.1248.1	0.25	-0.6
1,179,611	+		Xcc-8004.1248.1	0.25	-2.3
1,179,611	+		Xcc-8004.1248.1	0.25	-0.9
1,179,611	+		Xcc-8004.1248.1	0.25	-1.1
1,179,611	+		Xcc-8004.1248.1	0.25	-2.3
1,179,611	+		Xcc-8004.1248.1	0.25	-1.4
1,179,611	+		Xcc-8004.1248.1	0.25	-1.2
1,179,611	+		Xcc-8004.1248.1	0.25	-0.1
1,179,611	+		Xcc-8004.1248.1	0.25	-1.6
1,179,611	+		Xcc-8004.1248.1	0.25	-1.2
1,179,611	+		Xcc-8004.1248.1	0.25	-2.3
1,179,611	+		Xcc-8004.1248.1	0.25	-0.9
1,179,611	+		Xcc-8004.1248.1	0.25	-1.1
1,179,611	+		Xcc-8004.1248.1	0.25	-1.1
1,179,611	+		Xcc-8004.1248.1	0.25	-0.8
1,179,611	+		Xcc-8004.1248.1	0.25	-1.8
1,179,611	+		Xcc-8004.1248.1	0.25	-2.1
1,179,611	+		Xcc-8004.1248.1	0.25	-3.0
1,179,612	-		Xcc-8004.1248.1	0.26	-1.0
1,179,612	-		Xcc-8004.1248.1	0.26	-1.7
1,179,612	-		Xcc-8004.1248.1	0.26	-0.7
1,179,612	-		Xcc-8004.1248.1	0.26	-1.6
1,179,612	-		Xcc-8004.1248.1	0.26	-2.9
1,179,612	-		Xcc-8004.1248.1	0.26	-2.2
1,179,612	-		Xcc-8004.1248.1	0.26	-1.2
1,179,612	-		Xcc-8004.1248.1	0.26	-2.3
1,179,612	-		Xcc-8004.1248.1	0.26	-0.8
1,179,612	-		Xcc-8004.1248.1	0.26	+0.0
1,179,740	+		Xcc-8004.1248.1	0.36	-3.9
1,179,741	-		Xcc-8004.1248.1	0.36	-2.6
1,180,016	+		Xcc-8004.1248.1	0.59	-1.3
1,180,553	+				+0.9
1,180,553	+				-2.0
1,180,553	+				+0.2
1,180,554	-				-2.1
1,180,554	-				-1.6
1,180,554	-				-1.7
1,180,554	-				-3.4
1,180,554	-				-1.5
1,180,556	-				-3.6
1,180,556	-				-1.3
1,180,556	-				-3.3
1,180,584	-				-1.6
1,180,600	+				-0.6
1,180,602	+				-1.9
1,180,603	-				-0.5
1,180,603	-				-0.8
1,180,625	+				+0.2
1,180,625	+				+0.9
1,180,625	+				-0.6
1,180,625	+				-1.2
1,180,626	-				+1.1
1,180,626	-				+0.9
1,180,626	-				-0.5
1,180,626	-				+0.0
1,180,642	+				+0.4
1,180,642	+				-0.8
1,180,642	+				+2.2
1,180,643	-				+0.2
1,180,643	-				-2.3
1,180,643	-				-1.6
1,180,666	+				-0.7
1,180,666	+				-0.4
1,180,666	+				-1.7
1,180,666	+				-0.5
1,180,666	+				+0.3
1,180,666	+				+1.0
1,180,666	+				-0.3
1,180,666	+				-0.8
1,180,666	+				-0.1
1,180,666	+				+0.8
1,180,666	+				+1.7
1,180,666	+				+1.5
1,180,666	+				+0.1
1,180,666	+				-1.5
1,180,666	+				+0.5
1,180,666	+				-1.6
1,180,666	+				-0.5
1,180,666	+				-0.6
1,180,666	+				-1.0
1,180,666	+				-1.1
1,180,667	-				-2.5
1,180,667	-				-3.8
1,180,667	-				-1.6
1,180,667	-				-1.3
1,180,667	-				-1.4
1,180,667	-				-0.1
1,180,667	-				-2.3
1,180,667	-				-2.2
1,180,667	-				-2.3
1,180,667	-				-2.1
1,180,667	-				-2.1
1,180,667	-				-1.6
1,180,667	-				-0.4
1,180,667	-				-3.3
1,180,667	-				-2.6
1,180,667	-				-3.7
1,180,667	-				-2.2
1,180,919	+		Xcc-8004.1249.1	0.25	-1.8
1,180,919	+		Xcc-8004.1249.1	0.25	-2.4
1,180,919	+		Xcc-8004.1249.1	0.25	-2.2
1,180,919	+		Xcc-8004.1249.1	0.25	-2.2
1,180,919	+		Xcc-8004.1249.1	0.25	-1.6
1,180,920	-		Xcc-8004.1249.1	0.25	-3.2
1,180,920	-		Xcc-8004.1249.1	0.25	-2.3
1,180,976	-		Xcc-8004.1249.1	0.31	-0.8
1,181,028	-		Xcc-8004.1249.1	0.36	-2.3
1,181,028	-		Xcc-8004.1249.1	0.36	-1.3
1,181,182	-		Xcc-8004.1249.1	0.52	-2.9
1,181,261	+		Xcc-8004.1249.1	0.60	-2.3
1,181,261	+		Xcc-8004.1249.1	0.60	-2.1
1,181,262	-		Xcc-8004.1249.1	0.60	-0.5
1,181,369	+		Xcc-8004.1249.1	0.71	-1.8
1,181,369	+		Xcc-8004.1249.1	0.71	-1.0
1,181,369	+		Xcc-8004.1249.1	0.71	-0.6
1,181,369	+		Xcc-8004.1249.1	0.71	-0.6
1,181,370	-		Xcc-8004.1249.1	0.71	-3.1
1,181,370	-		Xcc-8004.1249.1	0.71	+0.7