Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1247.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1246.1 and Xcc-8004.1247.1 are separated by 162 nucleotidesXcc-8004.1247.1 and Xcc-8004.1248.1 are separated by 16 nucleotides Xcc-8004.1246.1: Xcc-8004.1246.1 - Putative protein-S-isoprenylcysteine methyltransferase, at 1,177,659 to 1,178,165 Xcc-8004.1246.1 Xcc-8004.1247.1: Xcc-8004.1247.1 - Cysteine synthase (EC 2.5.1.47), at 1,178,328 to 1,179,287 Xcc-8004.1247.1 Xcc-8004.1248.1: Xcc-8004.1248.1 - Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 1,179,304 to 1,180,509 Xcc-8004.1248.1 Position (kb) 1178 1179 1180Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1177.328 kb on + strandat 1177.328 kb on + strandat 1177.329 kb on - strandat 1177.329 kb on - strandat 1177.329 kb on - strandat 1177.367 kb on + strandat 1177.367 kb on + strandat 1177.367 kb on + strandat 1177.368 kb on - strandat 1177.368 kb on - strandat 1177.368 kb on - strandat 1177.562 kb on - strandat 1177.648 kb on + strandat 1177.648 kb on + strandat 1177.649 kb on - strandat 1177.674 kb on + strandat 1177.688 kb on - strandat 1177.688 kb on - strandat 1177.697 kb on - strandat 1177.825 kb on + strand, within Xcc-8004.1246.1at 1177.825 kb on + strand, within Xcc-8004.1246.1at 1177.825 kb on + strand, within Xcc-8004.1246.1at 1177.826 kb on - strand, within Xcc-8004.1246.1at 1177.826 kb on - strand, within Xcc-8004.1246.1at 1177.826 kb on - strand, within Xcc-8004.1246.1at 1177.826 kb on - strand, within Xcc-8004.1246.1at 1177.826 kb on - strand, within Xcc-8004.1246.1at 1177.826 kb on - strand, within Xcc-8004.1246.1at 1177.846 kb on + strand, within Xcc-8004.1246.1at 1177.846 kb on + strand, within Xcc-8004.1246.1at 1177.846 kb on + strand, within Xcc-8004.1246.1at 1177.846 kb on + strand, within Xcc-8004.1246.1at 1177.847 kb on - strand, within Xcc-8004.1246.1at 1177.847 kb on - strand, within Xcc-8004.1246.1at 1177.847 kb on - strand, within Xcc-8004.1246.1at 1177.847 kb on - strand, within Xcc-8004.1246.1at 1177.847 kb on - strand, within Xcc-8004.1246.1at 1178.159 kb on + strandat 1178.159 kb on + strandat 1178.197 kb on + strandat 1178.197 kb on + strandat 1178.198 kb on - strandat 1178.398 kb on + strandat 1178.398 kb on + strandat 1178.398 kb on + strandat 1178.399 kb on - strandat 1178.399 kb on - strandat 1178.724 kb on + strand, within Xcc-8004.1247.1at 1178.725 kb on - strand, within Xcc-8004.1247.1at 1178.725 kb on - strand, within Xcc-8004.1247.1at 1178.725 kb on - strand, within Xcc-8004.1247.1at 1178.725 kb on - strand, within Xcc-8004.1247.1at 1178.836 kb on + strand, within Xcc-8004.1247.1at 1179.028 kb on + strand, within Xcc-8004.1247.1at 1179.028 kb on + strand, within Xcc-8004.1247.1at 1179.028 kb on + strand, within Xcc-8004.1247.1at 1179.029 kb on - strand, within Xcc-8004.1247.1at 1179.029 kb on - strand, within Xcc-8004.1247.1at 1179.199 kb on + strandat 1179.199 kb on + strandat 1179.200 kb on - strandat 1179.200 kb on - strandat 1179.277 kb on + strandat 1179.588 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.611 kb on + strand, within Xcc-8004.1248.1at 1179.612 kb on - strand, within Xcc-8004.1248.1at 1179.612 kb on - strand, within Xcc-8004.1248.1at 1179.612 kb on - strand, within Xcc-8004.1248.1at 1179.612 kb on - strand, within Xcc-8004.1248.1at 1179.612 kb on - strand, within Xcc-8004.1248.1at 1179.612 kb on - strand, within Xcc-8004.1248.1at 1179.612 kb on - strand, within Xcc-8004.1248.1at 1179.612 kb on - strand, within Xcc-8004.1248.1at 1179.612 kb on - strand, within Xcc-8004.1248.1at 1179.612 kb on - strand, within Xcc-8004.1248.1at 1179.740 kb on + strand, within Xcc-8004.1248.1at 1179.741 kb on - strand, within Xcc-8004.1248.1at 1180.016 kb on + strand, within Xcc-8004.1248.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,177,328 + +1.2
1,177,328 + +0.8
1,177,329 - -0.1
1,177,329 - -0.5
1,177,329 - -0.6
1,177,367 + +0.1
1,177,367 + -0.5
1,177,367 + -0.7
1,177,368 - +1.2
1,177,368 - -0.7
1,177,368 - -0.1
1,177,562 - -0.1
1,177,648 + +0.1
1,177,648 + -0.5
1,177,649 - +0.3
1,177,674 + +0.5
1,177,688 - +0.0
1,177,688 - +0.5
1,177,697 - -0.7
1,177,825 + Xcc-8004.1246.1 0.33 -0.3
1,177,825 + Xcc-8004.1246.1 0.33 +0.6
1,177,825 + Xcc-8004.1246.1 0.33 +1.1
1,177,826 - Xcc-8004.1246.1 0.33 -0.1
1,177,826 - Xcc-8004.1246.1 0.33 +0.6
1,177,826 - Xcc-8004.1246.1 0.33 -0.7
1,177,826 - Xcc-8004.1246.1 0.33 -1.3
1,177,826 - Xcc-8004.1246.1 0.33 -1.8
1,177,826 - Xcc-8004.1246.1 0.33 +0.5
1,177,846 + Xcc-8004.1246.1 0.37 -0.4
1,177,846 + Xcc-8004.1246.1 0.37 -1.3
1,177,846 + Xcc-8004.1246.1 0.37 -1.1
1,177,846 + Xcc-8004.1246.1 0.37 +0.4
1,177,847 - Xcc-8004.1246.1 0.37 +0.1
1,177,847 - Xcc-8004.1246.1 0.37 -0.5
1,177,847 - Xcc-8004.1246.1 0.37 -0.4
1,177,847 - Xcc-8004.1246.1 0.37 +0.5
1,177,847 - Xcc-8004.1246.1 0.37 +0.1
1,178,159 + -0.8
1,178,159 + +0.3
1,178,197 + +1.2
1,178,197 + +0.2
1,178,198 - -2.6
1,178,398 + -1.7
1,178,398 + -2.6
1,178,398 + -3.7
1,178,399 - +0.0
1,178,399 - +0.2
1,178,724 + Xcc-8004.1247.1 0.41 -0.7
1,178,725 - Xcc-8004.1247.1 0.41 -0.8
1,178,725 - Xcc-8004.1247.1 0.41 -0.3
1,178,725 - Xcc-8004.1247.1 0.41 -1.2
1,178,725 - Xcc-8004.1247.1 0.41 -0.6
1,178,836 + Xcc-8004.1247.1 0.53 -0.8
1,179,028 + Xcc-8004.1247.1 0.73 -2.1
1,179,028 + Xcc-8004.1247.1 0.73 -1.1
1,179,028 + Xcc-8004.1247.1 0.73 -1.6
1,179,029 - Xcc-8004.1247.1 0.73 -3.0
1,179,029 - Xcc-8004.1247.1 0.73 -0.8
1,179,199 + -2.7
1,179,199 + -3.8
1,179,200 - -3.1
1,179,200 - -0.1
1,179,277 + -1.4
1,179,588 + Xcc-8004.1248.1 0.24 -2.3
1,179,611 + Xcc-8004.1248.1 0.25 -1.2
1,179,611 + Xcc-8004.1248.1 0.25 -2.4
1,179,611 + Xcc-8004.1248.1 0.25 -0.6
1,179,611 + Xcc-8004.1248.1 0.25 -2.3
1,179,611 + Xcc-8004.1248.1 0.25 -0.9
1,179,611 + Xcc-8004.1248.1 0.25 -1.1
1,179,611 + Xcc-8004.1248.1 0.25 -2.3
1,179,611 + Xcc-8004.1248.1 0.25 -1.4
1,179,611 + Xcc-8004.1248.1 0.25 -1.2
1,179,611 + Xcc-8004.1248.1 0.25 -0.1
1,179,611 + Xcc-8004.1248.1 0.25 -1.6
1,179,611 + Xcc-8004.1248.1 0.25 -1.2
1,179,611 + Xcc-8004.1248.1 0.25 -2.3
1,179,611 + Xcc-8004.1248.1 0.25 -0.9
1,179,611 + Xcc-8004.1248.1 0.25 -1.1
1,179,611 + Xcc-8004.1248.1 0.25 -1.1
1,179,611 + Xcc-8004.1248.1 0.25 -0.8
1,179,611 + Xcc-8004.1248.1 0.25 -1.8
1,179,611 + Xcc-8004.1248.1 0.25 -2.1
1,179,611 + Xcc-8004.1248.1 0.25 -3.0
1,179,612 - Xcc-8004.1248.1 0.26 -1.0
1,179,612 - Xcc-8004.1248.1 0.26 -1.7
1,179,612 - Xcc-8004.1248.1 0.26 -0.7
1,179,612 - Xcc-8004.1248.1 0.26 -1.6
1,179,612 - Xcc-8004.1248.1 0.26 -2.9
1,179,612 - Xcc-8004.1248.1 0.26 -2.2
1,179,612 - Xcc-8004.1248.1 0.26 -1.2
1,179,612 - Xcc-8004.1248.1 0.26 -2.3
1,179,612 - Xcc-8004.1248.1 0.26 -0.8
1,179,612 - Xcc-8004.1248.1 0.26 +0.0
1,179,740 + Xcc-8004.1248.1 0.36 -3.9
1,179,741 - Xcc-8004.1248.1 0.36 -2.6
1,180,016 + Xcc-8004.1248.1 0.59 -1.3

Or see this region's nucleotide sequence