Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1243.1 and Xcc-8004.1244.1 are separated by 464 nucleotides Xcc-8004.1244.1 and Xcc-8004.1245.1 are separated by 436 nucleotides
Xcc-8004.1243.1: Xcc-8004.1243.1 - Pyruvate kinase (EC 2.7.1.40), at 1,173,240 to 1,174,706
Xcc-8004.1243.1
Xcc-8004.1244.1: Xcc-8004.1244.1 - Fructose-bisphosphate aldolase class I (EC 4.1.2.13), at 1,175,171 to 1,176,175
Xcc-8004.1244.1
Xcc-8004.1245.1: Xcc-8004.1245.1 - COG2110, Macro domain, possibly ADP-ribose binding module, at 1,176,612 to 1,177,151
Xcc-8004.1245.1
Position (kb) 1175
1176
1177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1174.206 kb on + strand, within Xcc-8004.1243.1 at 1174.206 kb on + strand, within Xcc-8004.1243.1 at 1174.407 kb on + strand, within Xcc-8004.1243.1 at 1174.408 kb on - strand, within Xcc-8004.1243.1 at 1174.408 kb on - strand, within Xcc-8004.1243.1 at 1174.408 kb on - strand, within Xcc-8004.1243.1 at 1174.430 kb on + strand, within Xcc-8004.1243.1 at 1174.431 kb on - strand, within Xcc-8004.1243.1 at 1174.431 kb on - strand, within Xcc-8004.1243.1 at 1174.440 kb on + strand, within Xcc-8004.1243.1 at 1174.440 kb on + strand, within Xcc-8004.1243.1 at 1174.440 kb on + strand, within Xcc-8004.1243.1 at 1174.440 kb on + strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.441 kb on - strand, within Xcc-8004.1243.1 at 1174.704 kb on + strand at 1174.704 kb on + strand at 1174.704 kb on + strand at 1174.704 kb on + strand at 1174.705 kb on - strand at 1174.721 kb on + strand at 1174.721 kb on + strand at 1174.721 kb on + strand at 1174.722 kb on - strand at 1174.722 kb on - strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.851 kb on + strand at 1174.852 kb on - strand at 1174.852 kb on - strand at 1174.852 kb on - strand at 1174.852 kb on - strand at 1174.852 kb on - strand at 1174.852 kb on - strand at 1174.852 kb on - strand at 1174.954 kb on + strand at 1174.954 kb on + strand at 1174.955 kb on - strand at 1174.957 kb on + strand at 1175.084 kb on + strand at 1175.085 kb on - strand at 1175.117 kb on + strand at 1175.117 kb on + strand at 1175.118 kb on - strand at 1175.132 kb on + strand at 1175.134 kb on + strand at 1175.134 kb on + strand at 1175.134 kb on + strand at 1175.134 kb on + strand at 1175.134 kb on + strand at 1175.168 kb on + strand at 1175.168 kb on + strand at 1175.168 kb on + strand at 1175.168 kb on + strand at 1175.168 kb on + strand at 1175.168 kb on + strand at 1175.168 kb on + strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.169 kb on - strand at 1175.354 kb on + strand, within Xcc-8004.1244.1 at 1175.354 kb on + strand, within Xcc-8004.1244.1 at 1175.354 kb on + strand, within Xcc-8004.1244.1 at 1175.355 kb on - strand, within Xcc-8004.1244.1 at 1175.355 kb on - strand, within Xcc-8004.1244.1 at 1175.355 kb on - strand, within Xcc-8004.1244.1 at 1175.355 kb on - strand, within Xcc-8004.1244.1 at 1175.355 kb on - strand, within Xcc-8004.1244.1 at 1175.426 kb on + strand, within Xcc-8004.1244.1 at 1175.426 kb on + strand, within Xcc-8004.1244.1 at 1175.426 kb on + strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.427 kb on - strand, within Xcc-8004.1244.1 at 1175.549 kb on + strand, within Xcc-8004.1244.1 at 1175.549 kb on + strand, within Xcc-8004.1244.1 at 1175.549 kb on + strand, within Xcc-8004.1244.1 at 1175.549 kb on + strand, within Xcc-8004.1244.1 at 1175.549 kb on + strand, within Xcc-8004.1244.1 at 1175.549 kb on + strand, within Xcc-8004.1244.1 at 1175.550 kb on - strand, within Xcc-8004.1244.1 at 1175.550 kb on - strand, within Xcc-8004.1244.1 at 1175.550 kb on - strand, within Xcc-8004.1244.1 at 1175.550 kb on - strand, within Xcc-8004.1244.1 at 1175.552 kb on + strand, within Xcc-8004.1244.1 at 1175.552 kb on + strand, within Xcc-8004.1244.1 at 1175.552 kb on + strand, within Xcc-8004.1244.1 at 1175.552 kb on + strand, within Xcc-8004.1244.1 at 1175.552 kb on + strand, within Xcc-8004.1244.1 at 1175.552 kb on + strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.553 kb on - strand, within Xcc-8004.1244.1 at 1175.658 kb on - strand, within Xcc-8004.1244.1 at 1175.745 kb on - strand, within Xcc-8004.1244.1 at 1175.789 kb on + strand, within Xcc-8004.1244.1 at 1175.789 kb on + strand, within Xcc-8004.1244.1 at 1175.789 kb on + strand, within Xcc-8004.1244.1 at 1175.789 kb on + strand, within Xcc-8004.1244.1 at 1175.790 kb on - strand, within Xcc-8004.1244.1 at 1175.790 kb on - strand, within Xcc-8004.1244.1 at 1176.099 kb on - strand at 1176.099 kb on - strand at 1176.122 kb on + strand at 1176.123 kb on - strand at 1176.201 kb on + strand at 1176.201 kb on + strand at 1176.201 kb on + strand at 1176.201 kb on + strand at 1176.201 kb on + strand at 1176.201 kb on + strand at 1176.202 kb on - strand at 1176.202 kb on - strand at 1176.202 kb on - strand at 1176.350 kb on - strand at 1176.387 kb on + strand at 1176.387 kb on + strand at 1176.387 kb on + strand at 1176.387 kb on + strand at 1176.387 kb on + strand at 1176.388 kb on - strand at 1176.388 kb on - strand at 1176.398 kb on + strand at 1176.398 kb on + strand at 1176.398 kb on + strand at 1176.398 kb on + strand at 1176.398 kb on + strand at 1176.399 kb on - strand at 1176.399 kb on - strand at 1176.399 kb on - strand at 1176.399 kb on - strand at 1176.469 kb on + strand at 1176.470 kb on - strand at 1176.652 kb on + strand at 1176.652 kb on + strand at 1176.652 kb on + strand at 1176.653 kb on - strand at 1176.661 kb on + strand at 1176.661 kb on + strand at 1176.661 kb on + strand at 1176.661 kb on + strand at 1176.662 kb on - strand at 1176.662 kb on - strand at 1176.675 kb on - strand, within Xcc-8004.1245.1 at 1176.676 kb on + strand, within Xcc-8004.1245.1 at 1176.676 kb on + strand, within Xcc-8004.1245.1 at 1176.676 kb on + strand, within Xcc-8004.1245.1 at 1176.676 kb on + strand, within Xcc-8004.1245.1 at 1176.761 kb on - strand, within Xcc-8004.1245.1 at 1176.761 kb on - strand, within Xcc-8004.1245.1 at 1176.775 kb on + strand, within Xcc-8004.1245.1 at 1176.775 kb on + strand, within Xcc-8004.1245.1 at 1176.775 kb on + strand, within Xcc-8004.1245.1 at 1176.775 kb on + strand, within Xcc-8004.1245.1 at 1176.775 kb on + strand, within Xcc-8004.1245.1 at 1176.775 kb on + strand, within Xcc-8004.1245.1 at 1176.776 kb on - strand, within Xcc-8004.1245.1 at 1176.776 kb on - strand, within Xcc-8004.1245.1 at 1176.776 kb on - strand, within Xcc-8004.1245.1 at 1176.776 kb on - strand, within Xcc-8004.1245.1 at 1176.776 kb on - strand, within Xcc-8004.1245.1 at 1176.776 kb on - strand, within Xcc-8004.1245.1 at 1176.776 kb on - strand, within Xcc-8004.1245.1 at 1176.779 kb on + strand, within Xcc-8004.1245.1 at 1176.779 kb on + strand, within Xcc-8004.1245.1 at 1176.780 kb on - strand, within Xcc-8004.1245.1 at 1176.850 kb on + strand, within Xcc-8004.1245.1 at 1176.851 kb on - strand, within Xcc-8004.1245.1 at 1177.121 kb on + strand at 1177.151 kb on + strand at 1177.152 kb on - strand at 1177.152 kb on - strand at 1177.159 kb on + strand at 1177.159 kb on + strand at 1177.160 kb on - strand at 1177.160 kb on - strand at 1177.160 kb on - strand at 1177.163 kb on + strand at 1177.163 kb on + strand at 1177.163 kb on + strand at 1177.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 1,174,206 + Xcc-8004.1243.1 0.66 -0.3 1,174,206 + Xcc-8004.1243.1 0.66 -0.1 1,174,407 + Xcc-8004.1243.1 0.80 -0.7 1,174,408 - Xcc-8004.1243.1 0.80 +0.7 1,174,408 - Xcc-8004.1243.1 0.80 +1.3 1,174,408 - Xcc-8004.1243.1 0.80 +0.6 1,174,430 + Xcc-8004.1243.1 0.81 +0.6 1,174,431 - Xcc-8004.1243.1 0.81 -0.1 1,174,431 - Xcc-8004.1243.1 0.81 +0.6 1,174,440 + Xcc-8004.1243.1 0.82 -0.2 1,174,440 + Xcc-8004.1243.1 0.82 -0.6 1,174,440 + Xcc-8004.1243.1 0.82 -1.3 1,174,440 + Xcc-8004.1243.1 0.82 +1.8 1,174,441 - Xcc-8004.1243.1 0.82 -0.3 1,174,441 - Xcc-8004.1243.1 0.82 +0.3 1,174,441 - Xcc-8004.1243.1 0.82 -0.3 1,174,441 - Xcc-8004.1243.1 0.82 +2.1 1,174,441 - Xcc-8004.1243.1 0.82 -0.1 1,174,441 - Xcc-8004.1243.1 0.82 +0.2 1,174,441 - Xcc-8004.1243.1 0.82 -0.1 1,174,441 - Xcc-8004.1243.1 0.82 +0.0 1,174,704 + -1.1 1,174,704 + -1.4 1,174,704 + -0.6 1,174,704 + +1.2 1,174,705 - +0.6 1,174,721 + -0.1 1,174,721 + +0.2 1,174,721 + +0.2 1,174,722 - +1.4 1,174,722 - -0.3 1,174,851 + +0.3 1,174,851 + -0.5 1,174,851 + -0.7 1,174,851 + +0.3 1,174,851 + -0.4 1,174,851 + -0.1 1,174,851 + +0.8 1,174,851 + +0.7 1,174,851 + +1.2 1,174,851 + +0.6 1,174,851 + +0.3 1,174,852 - -0.7 1,174,852 - +0.8 1,174,852 - +1.1 1,174,852 - +0.2 1,174,852 - -2.2 1,174,852 - -1.2 1,174,852 - -0.4 1,174,954 + +0.3 1,174,954 + +1.2 1,174,955 - -0.4 1,174,957 + -0.2 1,175,084 + -0.0 1,175,085 - -1.6 1,175,117 + -0.5 1,175,117 + +0.9 1,175,118 - -0.7 1,175,132 + -0.8 1,175,134 + -1.1 1,175,134 + -0.8 1,175,134 + -0.6 1,175,134 + +0.3 1,175,134 + +1.5 1,175,168 + -1.4 1,175,168 + +0.2 1,175,168 + +0.2 1,175,168 + -1.2 1,175,168 + +0.9 1,175,168 + -0.4 1,175,168 + -0.1 1,175,169 - +0.5 1,175,169 - -2.2 1,175,169 - -1.8 1,175,169 - +0.2 1,175,169 - -1.1 1,175,169 - -1.4 1,175,169 - -1.2 1,175,169 - -1.1 1,175,169 - -2.3 1,175,354 + Xcc-8004.1244.1 0.18 -2.5 1,175,354 + Xcc-8004.1244.1 0.18 -1.8 1,175,354 + Xcc-8004.1244.1 0.18 -0.8 1,175,355 - Xcc-8004.1244.1 0.18 -1.2 1,175,355 - Xcc-8004.1244.1 0.18 -1.2 1,175,355 - Xcc-8004.1244.1 0.18 -1.1 1,175,355 - Xcc-8004.1244.1 0.18 -1.4 1,175,355 - Xcc-8004.1244.1 0.18 -0.6 1,175,426 + Xcc-8004.1244.1 0.25 -1.1 1,175,426 + Xcc-8004.1244.1 0.25 -1.2 1,175,426 + Xcc-8004.1244.1 0.25 -0.5 1,175,427 - Xcc-8004.1244.1 0.25 -1.2 1,175,427 - Xcc-8004.1244.1 0.25 +0.5 1,175,427 - Xcc-8004.1244.1 0.25 -2.6 1,175,427 - Xcc-8004.1244.1 0.25 +0.2 1,175,427 - Xcc-8004.1244.1 0.25 -1.4 1,175,427 - Xcc-8004.1244.1 0.25 -0.6 1,175,427 - Xcc-8004.1244.1 0.25 -1.3 1,175,549 + Xcc-8004.1244.1 0.38 -0.1 1,175,549 + Xcc-8004.1244.1 0.38 -0.9 1,175,549 + Xcc-8004.1244.1 0.38 -0.8 1,175,549 + Xcc-8004.1244.1 0.38 -1.9 1,175,549 + Xcc-8004.1244.1 0.38 -1.1 1,175,549 + Xcc-8004.1244.1 0.38 +0.3 1,175,550 - Xcc-8004.1244.1 0.38 -2.2 1,175,550 - Xcc-8004.1244.1 0.38 -1.1 1,175,550 - Xcc-8004.1244.1 0.38 -0.2 1,175,550 - Xcc-8004.1244.1 0.38 -2.1 1,175,552 + Xcc-8004.1244.1 0.38 -1.1 1,175,552 + Xcc-8004.1244.1 0.38 -1.1 1,175,552 + Xcc-8004.1244.1 0.38 -1.2 1,175,552 + Xcc-8004.1244.1 0.38 -2.1 1,175,552 + Xcc-8004.1244.1 0.38 -1.9 1,175,552 + Xcc-8004.1244.1 0.38 -1.6 1,175,553 - Xcc-8004.1244.1 0.38 -1.7 1,175,553 - Xcc-8004.1244.1 0.38 -1.4 1,175,553 - Xcc-8004.1244.1 0.38 -2.1 1,175,553 - Xcc-8004.1244.1 0.38 -0.6 1,175,553 - Xcc-8004.1244.1 0.38 -2.7 1,175,553 - Xcc-8004.1244.1 0.38 -1.8 1,175,553 - Xcc-8004.1244.1 0.38 +0.4 1,175,553 - Xcc-8004.1244.1 0.38 -2.7 1,175,553 - Xcc-8004.1244.1 0.38 -0.8 1,175,658 - Xcc-8004.1244.1 0.48 -3.6 1,175,745 - Xcc-8004.1244.1 0.57 -1.5 1,175,789 + Xcc-8004.1244.1 0.61 +0.2 1,175,789 + Xcc-8004.1244.1 0.61 -0.8 1,175,789 + Xcc-8004.1244.1 0.61 -1.8 1,175,789 + Xcc-8004.1244.1 0.61 -0.8 1,175,790 - Xcc-8004.1244.1 0.62 -1.8 1,175,790 - Xcc-8004.1244.1 0.62 -1.6 1,176,099 - -2.1 1,176,099 - -1.8 1,176,122 + -2.2 1,176,123 - +0.3 1,176,201 + +0.6 1,176,201 + +0.8 1,176,201 + -1.2 1,176,201 + +0.2 1,176,201 + +1.0 1,176,201 + +0.8 1,176,202 - +0.3 1,176,202 - +1.2 1,176,202 - +1.2 1,176,350 - +0.4 1,176,387 + +0.2 1,176,387 + -0.4 1,176,387 + -0.2 1,176,387 + -0.3 1,176,387 + -0.8 1,176,388 - -0.1 1,176,388 - -0.1 1,176,398 + -0.1 1,176,398 + -0.4 1,176,398 + +0.3 1,176,398 + +1.9 1,176,398 + -0.1 1,176,399 - +0.0 1,176,399 - -0.2 1,176,399 - -0.8 1,176,399 - +0.2 1,176,469 + +0.2 1,176,470 - +0.6 1,176,652 + +0.8 1,176,652 + -2.0 1,176,652 + -0.3 1,176,653 - -1.2 1,176,661 + -0.7 1,176,661 + +0.5 1,176,661 + -0.0 1,176,661 + -1.0 1,176,662 - -1.2 1,176,662 - -1.1 1,176,675 - Xcc-8004.1245.1 0.12 -2.3 1,176,676 + Xcc-8004.1245.1 0.12 -1.4 1,176,676 + Xcc-8004.1245.1 0.12 -0.4 1,176,676 + Xcc-8004.1245.1 0.12 -1.5 1,176,676 + Xcc-8004.1245.1 0.12 -1.1 1,176,761 - Xcc-8004.1245.1 0.28 +1.6 1,176,761 - Xcc-8004.1245.1 0.28 -1.1 1,176,775 + Xcc-8004.1245.1 0.30 +0.5 1,176,775 + Xcc-8004.1245.1 0.30 +0.7 1,176,775 + Xcc-8004.1245.1 0.30 +0.8 1,176,775 + Xcc-8004.1245.1 0.30 +1.0 1,176,775 + Xcc-8004.1245.1 0.30 +0.3 1,176,775 + Xcc-8004.1245.1 0.30 +0.3 1,176,776 - Xcc-8004.1245.1 0.30 +2.6 1,176,776 - Xcc-8004.1245.1 0.30 -0.1 1,176,776 - Xcc-8004.1245.1 0.30 -0.5 1,176,776 - Xcc-8004.1245.1 0.30 -1.6 1,176,776 - Xcc-8004.1245.1 0.30 -0.0 1,176,776 - Xcc-8004.1245.1 0.30 +0.5 1,176,776 - Xcc-8004.1245.1 0.30 -0.2 1,176,779 + Xcc-8004.1245.1 0.31 -0.4 1,176,779 + Xcc-8004.1245.1 0.31 -0.1 1,176,780 - Xcc-8004.1245.1 0.31 -0.3 1,176,850 + Xcc-8004.1245.1 0.44 -0.3 1,176,851 - Xcc-8004.1245.1 0.44 -0.9 1,177,121 + +0.7 1,177,151 + +0.1 1,177,152 - +1.1 1,177,152 - -0.3 1,177,159 + +1.2 1,177,159 + +1.7 1,177,160 - +0.7 1,177,160 - -0.9 1,177,160 - +0.2 1,177,163 + -0.8 1,177,163 + +0.9 1,177,163 + -1.9 1,177,164 - +0.3
Or see this region's nucleotide sequence