Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1241.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
1,170,307	+		Xcc-8004.1240.1	0.56	-0.1
1,170,307	+		Xcc-8004.1240.1	0.56	-1.3
1,170,307	+		Xcc-8004.1240.1	0.56	+0.1
1,170,307	+		Xcc-8004.1240.1	0.56	-0.3
1,170,307	+		Xcc-8004.1240.1	0.56	-0.4
1,170,307	+		Xcc-8004.1240.1	0.56	+0.7
1,170,308	-		Xcc-8004.1240.1	0.57	+0.1
1,170,308	-		Xcc-8004.1240.1	0.57	+0.0
1,170,308	-		Xcc-8004.1240.1	0.57	-0.7
1,170,308	-		Xcc-8004.1240.1	0.57	+0.7
1,170,308	-		Xcc-8004.1240.1	0.57	+0.5
1,170,308	-		Xcc-8004.1240.1	0.57	+0.2
1,170,571	+		Xcc-8004.1240.1	0.76	-0.2
1,170,572	-		Xcc-8004.1240.1	0.76	+0.9
1,170,587	+		Xcc-8004.1240.1	0.77	+0.3
1,170,588	-		Xcc-8004.1240.1	0.77	+1.6
1,170,588	-		Xcc-8004.1240.1	0.77	+0.7
1,170,588	-		Xcc-8004.1240.1	0.77	-0.4
1,170,809	+				-0.1
1,171,601	+		Xcc-8004.1241.1	0.32	-0.8
1,171,601	+		Xcc-8004.1241.1	0.32	-0.3
1,171,602	-		Xcc-8004.1241.1	0.32	-2.9
1,171,602	-		Xcc-8004.1241.1	0.32	-1.6
1,171,602	-		Xcc-8004.1241.1	0.32	-1.7
1,171,602	-		Xcc-8004.1241.1	0.32	-1.6
1,171,602	-		Xcc-8004.1241.1	0.32	-1.8
1,171,605	+		Xcc-8004.1241.1	0.33	-0.7
1,171,605	+		Xcc-8004.1241.1	0.33	-0.3
1,171,605	+		Xcc-8004.1241.1	0.33	-2.1
1,171,606	-		Xcc-8004.1241.1	0.33	-1.1
1,171,877	+		Xcc-8004.1241.1	0.56	+0.2
1,171,877	+		Xcc-8004.1241.1	0.56	-0.6
1,171,878	-		Xcc-8004.1241.1	0.56	-1.1
1,171,878	-		Xcc-8004.1241.1	0.56	-3.0
1,172,115	+		Xcc-8004.1241.1	0.76	-2.5
1,172,116	-		Xcc-8004.1241.1	0.76	-0.3
1,172,283	+				-1.3
1,172,283	+				-1.3
1,172,283	+				-1.1
1,172,283	+				-0.8
1,172,283	+				-2.3
1,172,283	+				-2.3
1,172,284	-				-1.4
1,172,284	-				-2.6
1,172,284	-				-1.3
1,172,284	-				-2.8
1,172,284	-				-1.7
1,172,284	-				-1.1
1,172,284	-				-1.8
1,172,284	-				-2.6
1,172,307	+				-2.1
1,172,307	+				-0.1
1,172,307	+				-3.5
1,172,307	+				-0.8
1,172,307	+				-2.8
1,172,307	+				-2.1
1,172,308	-				-0.8
1,172,308	-				-0.3
1,172,308	-				-2.0
1,172,308	-				-2.1
1,172,308	-				-0.5
1,172,308	-				-0.8
1,172,308	-				-0.3
1,172,308	-				-1.4
1,172,308	-				-0.8
1,172,308	-				-2.8
1,172,308	-				-1.8
1,172,586	+		Xcc-8004.1242.1	0.30	-0.5
1,172,586	+		Xcc-8004.1242.1	0.30	+0.9
1,172,586	+		Xcc-8004.1242.1	0.30	+1.2
1,172,586	+		Xcc-8004.1242.1	0.30	-0.3
1,172,586	+		Xcc-8004.1242.1	0.30	+0.7
1,172,619	-		Xcc-8004.1242.1	0.35	-0.5
1,172,709	+		Xcc-8004.1242.1	0.49	-1.7
1,172,709	+		Xcc-8004.1242.1	0.49	-0.8
1,172,709	+		Xcc-8004.1242.1	0.49	-1.1
1,172,733	-		Xcc-8004.1242.1	0.52	-0.6
1,173,039	-				+1.7
1,173,068	+				-1.0
1,173,068	+				-1.4
1,173,069	-				-1.1
1,173,069	-				+0.1
1,173,069	-				+0.7
1,173,121	+				+0.0
1,173,122	-				-0.8
1,173,122	-				-0.3
1,173,125	+				+1.2
1,173,125	+				+0.2
1,173,125	+				+1.3
1,173,125	+				-0.8
1,173,125	+				-1.1
1,173,125	+				-0.6
1,173,125	+				-0.2
1,173,125	+				-0.3
1,173,126	-				-0.4
1,173,126	-				-0.1
1,173,126	-				-1.3
1,173,126	-				+0.6
1,173,126	-				-0.5
1,173,126	-				+0.2
1,173,126	-				-0.1
1,173,126	-				-0.4
1,173,126	-				-0.6
1,173,126	-				-0.2
1,173,126	-				-0.9
1,173,126	-				+0.6
1,173,144	+				-0.6
1,173,144	+				-0.2
1,173,145	-				+0.1
1,173,145	-				+0.8
1,173,145	-				-0.6
1,173,172	-				-0.4
1,173,172	-				+0.3
1,173,172	-				-0.2
1,173,172	-				-0.4
1,173,172	-				+0.9
1,173,209	+				+0.1
1,173,210	-				-0.6
1,173,210	-				-0.5
1,173,225	+				+0.1
1,173,226	-				+1.0
1,173,226	-				-1.1