Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1209.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1208.1 and Xcc-8004.1209.1 are separated by 19 nucleotidesXcc-8004.1209.1 and Xcc-8004.1210.1 are separated by 117 nucleotides Xcc-8004.1208.1: Xcc-8004.1208.1 - Glucarate dehydratase (EC 4.2.1.40), at 1,142,266 to 1,143,621 Xcc-8004.1208.1 Xcc-8004.1209.1: Xcc-8004.1209.1 - D-galactarate permease, at 1,143,641 to 1,145,002 Xcc-8004.1209.1 Xcc-8004.1210.1: Xcc-8004.1210.1 - D-Glucuronolactone:NAD+ oxidoreductase (EC 1.2.1.3), at 1,145,120 to 1,146,700 Xcc-8004.1210.1 Position (kb) 1143 1144 1145 1146Strain fitness (log2 ratio) -2 -1 0 1at 1142.680 kb on - strand, within Xcc-8004.1208.1at 1142.680 kb on - strand, within Xcc-8004.1208.1at 1142.910 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.008 kb on + strand, within Xcc-8004.1208.1at 1143.156 kb on - strand, within Xcc-8004.1208.1at 1143.366 kb on - strand, within Xcc-8004.1208.1at 1143.500 kb on + strandat 1143.500 kb on + strandat 1143.501 kb on - strandat 1143.988 kb on - strand, within Xcc-8004.1209.1at 1143.988 kb on - strand, within Xcc-8004.1209.1at 1144.188 kb on + strand, within Xcc-8004.1209.1at 1144.215 kb on + strand, within Xcc-8004.1209.1at 1144.216 kb on - strand, within Xcc-8004.1209.1at 1144.248 kb on + strand, within Xcc-8004.1209.1at 1144.249 kb on - strand, within Xcc-8004.1209.1at 1144.249 kb on - strand, within Xcc-8004.1209.1at 1144.371 kb on + strand, within Xcc-8004.1209.1at 1144.371 kb on + strand, within Xcc-8004.1209.1at 1144.372 kb on - strand, within Xcc-8004.1209.1at 1144.372 kb on - strand, within Xcc-8004.1209.1at 1144.416 kb on + strand, within Xcc-8004.1209.1at 1144.416 kb on + strand, within Xcc-8004.1209.1at 1144.417 kb on - strand, within Xcc-8004.1209.1at 1144.417 kb on - strand, within Xcc-8004.1209.1at 1144.417 kb on - strand, within Xcc-8004.1209.1at 1144.417 kb on - strand, within Xcc-8004.1209.1at 1144.417 kb on - strand, within Xcc-8004.1209.1at 1144.758 kb on + strand, within Xcc-8004.1209.1at 1144.818 kb on + strand, within Xcc-8004.1209.1at 1144.818 kb on + strand, within Xcc-8004.1209.1at 1144.818 kb on + strand, within Xcc-8004.1209.1at 1144.819 kb on - strand, within Xcc-8004.1209.1at 1144.923 kb on + strandat 1144.923 kb on + strandat 1144.924 kb on - strandat 1145.017 kb on + strandat 1145.018 kb on - strandat 1145.018 kb on - strandat 1145.046 kb on + strandat 1145.157 kb on - strandat 1145.217 kb on + strandat 1145.667 kb on + strand, within Xcc-8004.1210.1at 1145.880 kb on + strand, within Xcc-8004.1210.1at 1145.881 kb on - strand, within Xcc-8004.1210.1at 1145.910 kb on + strand, within Xcc-8004.1210.1at 1145.910 kb on + strand, within Xcc-8004.1210.1at 1145.911 kb on - strand, within Xcc-8004.1210.1at 1145.911 kb on - strand, within Xcc-8004.1210.1at 1145.911 kb on - strand, within Xcc-8004.1210.1at 1145.911 kb on - strand, within Xcc-8004.1210.1at 1145.948 kb on + strand, within Xcc-8004.1210.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,142,680 - Xcc-8004.1208.1 0.31 +0.3
1,142,680 - Xcc-8004.1208.1 0.31 -0.3
1,142,910 + Xcc-8004.1208.1 0.47 -1.3
1,143,008 + Xcc-8004.1208.1 0.55 -0.3
1,143,008 + Xcc-8004.1208.1 0.55 +0.7
1,143,008 + Xcc-8004.1208.1 0.55 -0.8
1,143,008 + Xcc-8004.1208.1 0.55 -0.3
1,143,008 + Xcc-8004.1208.1 0.55 -0.1
1,143,156 - Xcc-8004.1208.1 0.66 +1.1
1,143,366 - Xcc-8004.1208.1 0.81 -2.0
1,143,500 + +0.4
1,143,500 + -1.5
1,143,501 - -0.5
1,143,988 - Xcc-8004.1209.1 0.25 +0.3
1,143,988 - Xcc-8004.1209.1 0.25 -1.6
1,144,188 + Xcc-8004.1209.1 0.40 +1.3
1,144,215 + Xcc-8004.1209.1 0.42 -0.5
1,144,216 - Xcc-8004.1209.1 0.42 +0.6
1,144,248 + Xcc-8004.1209.1 0.45 -1.2
1,144,249 - Xcc-8004.1209.1 0.45 +1.0
1,144,249 - Xcc-8004.1209.1 0.45 +0.1
1,144,371 + Xcc-8004.1209.1 0.54 -0.4
1,144,371 + Xcc-8004.1209.1 0.54 +1.3
1,144,372 - Xcc-8004.1209.1 0.54 -0.2
1,144,372 - Xcc-8004.1209.1 0.54 +0.6
1,144,416 + Xcc-8004.1209.1 0.57 +0.8
1,144,416 + Xcc-8004.1209.1 0.57 +0.6
1,144,417 - Xcc-8004.1209.1 0.57 -0.1
1,144,417 - Xcc-8004.1209.1 0.57 +0.4
1,144,417 - Xcc-8004.1209.1 0.57 -0.2
1,144,417 - Xcc-8004.1209.1 0.57 -0.4
1,144,417 - Xcc-8004.1209.1 0.57 -0.8
1,144,758 + Xcc-8004.1209.1 0.82 -0.7
1,144,818 + Xcc-8004.1209.1 0.86 -1.1
1,144,818 + Xcc-8004.1209.1 0.86 -1.3
1,144,818 + Xcc-8004.1209.1 0.86 +0.2
1,144,819 - Xcc-8004.1209.1 0.86 +1.3
1,144,923 + +0.2
1,144,923 + +0.2
1,144,924 - +1.5
1,145,017 + -1.1
1,145,018 - +0.2
1,145,018 - -0.2
1,145,046 + +0.3
1,145,157 - -0.5
1,145,217 + +0.8
1,145,667 + Xcc-8004.1210.1 0.35 -0.5
1,145,880 + Xcc-8004.1210.1 0.48 +1.7
1,145,881 - Xcc-8004.1210.1 0.48 +0.6
1,145,910 + Xcc-8004.1210.1 0.50 -0.1
1,145,910 + Xcc-8004.1210.1 0.50 +1.4
1,145,911 - Xcc-8004.1210.1 0.50 +0.7
1,145,911 - Xcc-8004.1210.1 0.50 +0.3
1,145,911 - Xcc-8004.1210.1 0.50 -0.0
1,145,911 - Xcc-8004.1210.1 0.50 +0.5
1,145,948 + Xcc-8004.1210.1 0.52 -0.2

Or see this region's nucleotide sequence