Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1206.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1204.1 and Xcc-8004.1205.1 are separated by 18 nucleotidesXcc-8004.1205.1 and Xcc-8004.1206.1 are separated by 138 nucleotidesXcc-8004.1206.1 and Xcc-8004.1207.1 are separated by 31 nucleotides Xcc-8004.1204.1: Xcc-8004.1204.1 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 1,136,662 to 1,138,803 Xcc-8004.1204.1 Xcc-8004.1205.1: Xcc-8004.1205.1 - hypothetical protein, at 1,138,822 to 1,139,202 Xcc-8004.1205.1 Xcc-8004.1206.1: Xcc-8004.1206.1 - D-galactarate dehydratase (EC 4.2.1.42), at 1,139,341 to 1,140,885 Xcc-8004.1206.1 Xcc-8004.1207.1: Xcc-8004.1207.1 - probable porin, at 1,140,917 to 1,142,188 Xcc-8004.1207.1 Position (kb) 1139 1140 1141Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1138.650 kb on - strandat 1138.650 kb on - strandat 1138.919 kb on + strand, within Xcc-8004.1205.1at 1138.920 kb on - strand, within Xcc-8004.1205.1at 1138.971 kb on - strand, within Xcc-8004.1205.1at 1138.971 kb on - strand, within Xcc-8004.1205.1at 1138.985 kb on - strand, within Xcc-8004.1205.1at 1139.121 kb on - strand, within Xcc-8004.1205.1at 1139.153 kb on + strand, within Xcc-8004.1205.1at 1139.185 kb on - strandat 1139.295 kb on - strandat 1139.381 kb on + strandat 1139.381 kb on + strandat 1139.381 kb on + strandat 1139.381 kb on + strandat 1139.382 kb on - strandat 1139.423 kb on - strandat 1139.433 kb on - strandat 1139.502 kb on + strand, within Xcc-8004.1206.1at 1139.676 kb on - strand, within Xcc-8004.1206.1at 1139.775 kb on + strand, within Xcc-8004.1206.1at 1140.185 kb on + strand, within Xcc-8004.1206.1at 1140.537 kb on + strand, within Xcc-8004.1206.1at 1140.537 kb on + strand, within Xcc-8004.1206.1at 1140.537 kb on + strand, within Xcc-8004.1206.1at 1140.537 kb on + strand, within Xcc-8004.1206.1at 1140.538 kb on - strand, within Xcc-8004.1206.1at 1140.538 kb on - strand, within Xcc-8004.1206.1at 1140.538 kb on - strand, within Xcc-8004.1206.1at 1140.538 kb on - strand, within Xcc-8004.1206.1at 1140.538 kb on - strand, within Xcc-8004.1206.1at 1140.540 kb on - strand, within Xcc-8004.1206.1at 1140.891 kb on + strandat 1140.892 kb on - strandat 1140.892 kb on - strandat 1140.892 kb on - strandat 1140.949 kb on - strandat 1140.988 kb on - strandat 1140.988 kb on - strandat 1141.060 kb on + strand, within Xcc-8004.1207.1at 1141.060 kb on + strand, within Xcc-8004.1207.1at 1141.061 kb on - strand, within Xcc-8004.1207.1at 1141.061 kb on - strand, within Xcc-8004.1207.1at 1141.061 kb on - strand, within Xcc-8004.1207.1at 1141.061 kb on - strand, within Xcc-8004.1207.1at 1141.061 kb on - strand, within Xcc-8004.1207.1at 1141.102 kb on - strand, within Xcc-8004.1207.1at 1141.102 kb on - strand, within Xcc-8004.1207.1at 1141.102 kb on - strand, within Xcc-8004.1207.1at 1141.135 kb on - strand, within Xcc-8004.1207.1at 1141.363 kb on + strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.364 kb on - strand, within Xcc-8004.1207.1at 1141.473 kb on + strand, within Xcc-8004.1207.1at 1141.474 kb on - strand, within Xcc-8004.1207.1at 1141.474 kb on - strand, within Xcc-8004.1207.1at 1141.520 kb on + strand, within Xcc-8004.1207.1at 1141.521 kb on - strand, within Xcc-8004.1207.1at 1141.521 kb on - strand, within Xcc-8004.1207.1at 1141.521 kb on - strand, within Xcc-8004.1207.1at 1141.545 kb on + strand, within Xcc-8004.1207.1at 1141.545 kb on + strand, within Xcc-8004.1207.1at 1141.545 kb on + strand, within Xcc-8004.1207.1at 1141.546 kb on - strand, within Xcc-8004.1207.1at 1141.546 kb on - strand, within Xcc-8004.1207.1at 1141.757 kb on + strand, within Xcc-8004.1207.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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1,138,650 - -1.7
1,138,650 - +1.7
1,138,919 + Xcc-8004.1205.1 0.25 -1.7
1,138,920 - Xcc-8004.1205.1 0.26 -2.9
1,138,971 - Xcc-8004.1205.1 0.39 -1.6
1,138,971 - Xcc-8004.1205.1 0.39 +0.2
1,138,985 - Xcc-8004.1205.1 0.43 -1.1
1,139,121 - Xcc-8004.1205.1 0.78 -1.8
1,139,153 + Xcc-8004.1205.1 0.87 -1.7
1,139,185 - -2.1
1,139,295 - -0.7
1,139,381 + -0.2
1,139,381 + +0.3
1,139,381 + +1.4
1,139,381 + -0.4
1,139,382 - -0.1
1,139,423 - -0.3
1,139,433 - -0.5
1,139,502 + Xcc-8004.1206.1 0.10 -0.1
1,139,676 - Xcc-8004.1206.1 0.22 -0.3
1,139,775 + Xcc-8004.1206.1 0.28 +1.2
1,140,185 + Xcc-8004.1206.1 0.55 +0.1
1,140,537 + Xcc-8004.1206.1 0.77 +0.2
1,140,537 + Xcc-8004.1206.1 0.77 -0.7
1,140,537 + Xcc-8004.1206.1 0.77 +0.9
1,140,537 + Xcc-8004.1206.1 0.77 +0.7
1,140,538 - Xcc-8004.1206.1 0.77 -0.6
1,140,538 - Xcc-8004.1206.1 0.77 -0.5
1,140,538 - Xcc-8004.1206.1 0.77 +0.9
1,140,538 - Xcc-8004.1206.1 0.77 -0.2
1,140,538 - Xcc-8004.1206.1 0.77 -0.2
1,140,540 - Xcc-8004.1206.1 0.78 -2.9
1,140,891 + -1.7
1,140,892 - +0.6
1,140,892 - -0.8
1,140,892 - +1.0
1,140,949 - -0.4
1,140,988 - -0.2
1,140,988 - +0.5
1,141,060 + Xcc-8004.1207.1 0.11 +0.2
1,141,060 + Xcc-8004.1207.1 0.11 -2.9
1,141,061 - Xcc-8004.1207.1 0.11 +0.2
1,141,061 - Xcc-8004.1207.1 0.11 -0.3
1,141,061 - Xcc-8004.1207.1 0.11 -0.4
1,141,061 - Xcc-8004.1207.1 0.11 -0.8
1,141,061 - Xcc-8004.1207.1 0.11 -0.8
1,141,102 - Xcc-8004.1207.1 0.15 -1.1
1,141,102 - Xcc-8004.1207.1 0.15 +0.3
1,141,102 - Xcc-8004.1207.1 0.15 -1.3
1,141,135 - Xcc-8004.1207.1 0.17 -1.7
1,141,363 + Xcc-8004.1207.1 0.35 +0.4
1,141,364 - Xcc-8004.1207.1 0.35 -0.9
1,141,364 - Xcc-8004.1207.1 0.35 +0.4
1,141,364 - Xcc-8004.1207.1 0.35 +0.1
1,141,364 - Xcc-8004.1207.1 0.35 -0.3
1,141,364 - Xcc-8004.1207.1 0.35 -0.3
1,141,473 + Xcc-8004.1207.1 0.44 +0.1
1,141,474 - Xcc-8004.1207.1 0.44 +0.8
1,141,474 - Xcc-8004.1207.1 0.44 +2.4
1,141,520 + Xcc-8004.1207.1 0.47 +0.5
1,141,521 - Xcc-8004.1207.1 0.47 -1.1
1,141,521 - Xcc-8004.1207.1 0.47 +0.4
1,141,521 - Xcc-8004.1207.1 0.47 +0.4
1,141,545 + Xcc-8004.1207.1 0.49 -0.4
1,141,545 + Xcc-8004.1207.1 0.49 +0.9
1,141,545 + Xcc-8004.1207.1 0.49 +0.3
1,141,546 - Xcc-8004.1207.1 0.49 -1.1
1,141,546 - Xcc-8004.1207.1 0.49 -0.1
1,141,757 + Xcc-8004.1207.1 0.66 -1.4

Or see this region's nucleotide sequence