Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1157.1 and Xcc-8004.1158.1 are separated by 10 nucleotides Xcc-8004.1158.1 and Xcc-8004.1159.1 overlap by 1 nucleotides Xcc-8004.1159.1 and Xcc-8004.1161.1 are separated by 48 nucleotides
Xcc-8004.1157.1: Xcc-8004.1157.1 - Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1), at 1,092,505 to 1,093,281
Xcc-8004.1157.1
Xcc-8004.1158.1: Xcc-8004.1158.1 - Molybdenum transport system permease protein ModB (TC 3.A.1.8.1), at 1,093,292 to 1,093,984
Xcc-8004.1158.1
Xcc-8004.1159.1: Xcc-8004.1159.1 - Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1), at 1,093,984 to 1,094,598
Xcc-8004.1159.1
Xcc-8004.1161.1: Xcc-8004.1161.1 - Flavoredoxin, at 1,094,647 to 1,095,204
Xcc-8004.1161.1
Position (kb) 1093
1094 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1092.315 kb on + strand at 1092.315 kb on + strand at 1092.682 kb on + strand, within Xcc-8004.1157.1 at 1092.682 kb on + strand, within Xcc-8004.1157.1 at 1092.769 kb on + strand, within Xcc-8004.1157.1 at 1092.769 kb on + strand, within Xcc-8004.1157.1 at 1092.769 kb on + strand, within Xcc-8004.1157.1 at 1092.769 kb on + strand, within Xcc-8004.1157.1 at 1092.770 kb on - strand, within Xcc-8004.1157.1 at 1092.770 kb on - strand, within Xcc-8004.1157.1 at 1092.770 kb on - strand, within Xcc-8004.1157.1 at 1093.085 kb on - strand, within Xcc-8004.1157.1 at 1093.085 kb on - strand, within Xcc-8004.1157.1 at 1093.085 kb on - strand, within Xcc-8004.1157.1 at 1093.085 kb on - strand, within Xcc-8004.1157.1 at 1093.814 kb on - strand, within Xcc-8004.1158.1 at 1093.850 kb on + strand, within Xcc-8004.1158.1 at 1093.851 kb on - strand, within Xcc-8004.1158.1 at 1094.143 kb on - strand, within Xcc-8004.1159.1 at 1094.143 kb on - strand, within Xcc-8004.1159.1 at 1094.143 kb on - strand, within Xcc-8004.1159.1 at 1094.167 kb on + strand, within Xcc-8004.1159.1 at 1094.168 kb on - strand, within Xcc-8004.1159.1 at 1094.218 kb on + strand, within Xcc-8004.1159.1 at 1094.275 kb on + strand, within Xcc-8004.1159.1 at 1094.536 kb on + strand, within Xcc-8004.1159.1 at 1094.536 kb on + strand, within Xcc-8004.1159.1 at 1094.536 kb on + strand, within Xcc-8004.1159.1 at 1094.536 kb on + strand, within Xcc-8004.1159.1 at 1094.537 kb on - strand at 1094.537 kb on - strand at 1094.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 1,092,315 + -1.3 1,092,315 + -0.8 1,092,682 + Xcc-8004.1157.1 0.23 +1.3 1,092,682 + Xcc-8004.1157.1 0.23 -2.2 1,092,769 + Xcc-8004.1157.1 0.34 +0.7 1,092,769 + Xcc-8004.1157.1 0.34 +0.7 1,092,769 + Xcc-8004.1157.1 0.34 -0.8 1,092,769 + Xcc-8004.1157.1 0.34 +0.7 1,092,770 - Xcc-8004.1157.1 0.34 +2.5 1,092,770 - Xcc-8004.1157.1 0.34 +0.1 1,092,770 - Xcc-8004.1157.1 0.34 -0.4 1,093,085 - Xcc-8004.1157.1 0.75 +0.9 1,093,085 - Xcc-8004.1157.1 0.75 -0.8 1,093,085 - Xcc-8004.1157.1 0.75 +0.2 1,093,085 - Xcc-8004.1157.1 0.75 -0.1 1,093,814 - Xcc-8004.1158.1 0.75 -1.3 1,093,850 + Xcc-8004.1158.1 0.81 +0.2 1,093,851 - Xcc-8004.1158.1 0.81 -1.1 1,094,143 - Xcc-8004.1159.1 0.26 +0.4 1,094,143 - Xcc-8004.1159.1 0.26 -0.2 1,094,143 - Xcc-8004.1159.1 0.26 +0.7 1,094,167 + Xcc-8004.1159.1 0.30 -1.8 1,094,168 - Xcc-8004.1159.1 0.30 +2.0 1,094,218 + Xcc-8004.1159.1 0.38 -0.4 1,094,275 + Xcc-8004.1159.1 0.47 +0.6 1,094,536 + Xcc-8004.1159.1 0.90 +0.0 1,094,536 + Xcc-8004.1159.1 0.90 -1.0 1,094,536 + Xcc-8004.1159.1 0.90 -0.3 1,094,536 + Xcc-8004.1159.1 0.90 -0.9 1,094,537 - +0.6 1,094,537 - -0.2 1,094,597 - -0.2
Or see this region's nucleotide sequence